Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010443

Physical Location & Seq

Genomic Coordinates Forward (+)

14809517 .. 14810394

Gene Structure 878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1187600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCGCACAATAGACCCCTCCATCTTCCTCTCCCCCTTCCTAGACGTTATTCAAAGCGACCACGTCCACGCCTCCGCCACCCGCGTCGTCCTCCCCGCCACGCTGAAGTCTTCGACGAGAAGACTCCGGGGGCGAAAGAAGCTATTAACACCGTGGTCACCTCCATCTCCACGTGCCGGCTTGAAAGAACCGACTCTGTTAACGAGGACGCCGTGATGATGAACATCCTCCAAATCCTGACCGGAATCATGAACCACCGCTCTTCGGTTCTGCTCTCCGATCAGGCCGTCTGCACAATCGTGAACACCTGTTTTCAGGTTGTTCAGCAATCGGCGAACAGAGGAGACTTGCTCATGCGAAGTGCGAGGTACACAATGCACGAGCAGATCCAGATCATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0009846 GO:0009856 GO:0012505 GO:0016020 GO:0016192 GO:0019899 GO:0022414 GO:0031984 GO:0032501 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0051020 GO:0051179 GO:0051234 GO:0051704 GO:0065007 GO:0065009 GO:0090406 GO:0098772 GO:0098791 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

DCB Sec7 Sec7_N

Protein Analysis

135

Amino Acids

15.41

Weight (kDa)

10.44

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19610
fragaria_vesca	FvH4_1g05140
malus_domestica	MD02G1050300.v1.1 MD15G1187600.v1.1
prunus_persica	Prupe.7G228800_v2.0.a1
pyrus_communis	pycom02g04190 pycom02g04200 pycom15g16840
rosa_chinensis	RchiOBHm_Chr2g0090771 RchiOBHm_Chr2g0090781
rosa_laevigata	RLG00000016142
rosa_multiflora	Rmu_co8351113.1_g000001 Rmu_ssc0000367.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150830
rosa_rugosa	Rorug02G0010400
rosa_samantha	Rh2AG056400 Rh2BG055100 Rh2CG057500 Rh2DG056000 Rh2DG056100
rosa_wichuraiana	Rw2G004610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	1 cut(s)	85
AciI	CCGC	4 cut(s)	76, 83, 97, 259
AclWI	GGATC	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	126
AcvI	CACGTG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	177, 265
AgsI	TTSAA	2 cut(s)	54, 185
AjiI	CACGTC	1 cut(s)	65
AleI	CACNNNNGTG	1 cut(s)	299
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	382
AoxI	GGCC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	151
BauI	CACGAG	1 cut(s)	380
BbrPI	CACGTG	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	103, 128
BccI	CCATC	2 cut(s)	30, 173
BceAI	ACGGC	2 cut(s)	197, 272
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	129
BmgBI	CACGTC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	103, 128
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
BpuMI	CCSGG	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	174
BsaBI	GATNNNNATC	2 cut(s)	224, 392
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	128, 153
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 265
Bse118I	RCCGGY	1 cut(s)	177
Bse8I	GATNNNNATC	2 cut(s)	224, 392
BseDI	CCNNGG	2 cut(s)	128, 153
BseGI	GGATG	1 cut(s)	225
BseJI	GATNNNNATC	2 cut(s)	224, 392
BseLI	CCNNNNNNNGG	2 cut(s)	177, 265
BseRI	GAGGAG	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	287
BsiSI	CCGG	3 cut(s)	128, 178, 243
BslI	CCNNNNNNNGG	2 cut(s)	177, 265
BsmAI	GTCTC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	280, 387, 393
BspACI	CCGC	4 cut(s)	76, 83, 97, 259
BspANI	GGCC	1 cut(s)	287
BspFNI	CGCG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	249
BspPI	GGATC	1 cut(s)	382
BspQI	GCTCTTC	1 cut(s)	268
BsrBI	CCGCTC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	128, 153
BssMI	GATC	3 cut(s)	280, 387, 393
BssNI	GRCGYC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	283, 390, 396
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	280, 387, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	85
BstV2I	GAAGAC	2 cut(s)	103, 128
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	179
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	177
CseI	GACGC	2 cut(s)	74, 218
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	2 cut(s)	250, 355
CviJI	RGCY	3 cut(s)	143, 181, 287
CviKI_1	RGCY	3 cut(s)	143, 181, 287
CviQI	GTAC	1 cut(s)	370
DpnI	GATC	3 cut(s)	282, 389, 395
DpnII	GATC	3 cut(s)	280, 387, 393
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
EciI	GGCGGA	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	126
Eco72I	CACGTG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	157
FaeI	CATG	2 cut(s)	253, 358
FaiI	YATR	3 cut(s)	251, 356, 398
FatI	CATG	2 cut(s)	249, 354
FauI	CCCGC	2 cut(s)	90, 104
FokI	GGATG	1 cut(s)	212
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	3 cut(s)	128, 178, 243
HgaI	GACGC	2 cut(s)	74, 218
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	253, 358
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	124, 194, 246
HpaI	GTTAAC	1 cut(s)	202
HpaII	CCGG	3 cut(s)	128, 178, 243
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	4 cut(s)	68, 202, 304, 372
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	4 cut(s)	238, 250, 301, 391
Hpy8I	GTNNAC	4 cut(s)	68, 202, 304, 372
Hpy99I	CGWCG	2 cut(s)	90, 119
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	3 cut(s)	46, 64, 173
HpyCH4V	TGCA	2 cut(s)	294, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpySE526I	ACGT	3 cut(s)	46, 64, 173
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	253, 358
HspAI	GCGC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	177
KroNI	GCCGGC	1 cut(s)	179
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	280, 387, 393
LguI	GCTCTTC	1 cut(s)	268
LpnPI	CCDG	7 cut(s)	141, 191, 251, 256, 269, 302, 322
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	3 cut(s)	46, 64, 173
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	3 cut(s)	282, 389, 395
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	3 cut(s)	280, 387, 393
MboII	GAAGA	4 cut(s)	17, 103, 133, 255
MflI	RGATCY	1 cut(s)	387
MlyI	GAGTC	2 cut(s)	118, 188
MnlI	CCTC	9 cut(s)	29, 39, 83, 102, 172, 199, 239, 335, 360
MroNI	GCCGGC	1 cut(s)	177
MseI	TTAA	2 cut(s)	147, 201
MslI	CAYNNNNRTG	1 cut(s)	299
MspI	CCGG	3 cut(s)	128, 178, 243
MspR9I	CCNGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	140
NaeI	GCCGGC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	3 cut(s)	280, 387, 393
NgoMIV	GCCGGC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	253, 358
NmuCI	GTSAC	1 cut(s)	157
OliI	CACNNNNGTG	1 cut(s)	299
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdiI	GCCGGC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	246
PflFI	GACNNNGTC	1 cut(s)	63
PleI	GAGTC	2 cut(s)	118, 188
PmaCI	CACGTG	1 cut(s)	174
PmlI	CACGTG	1 cut(s)	174
PpsI	GAGTC	2 cut(s)	118, 188
Ppu21I	YACGTR	1 cut(s)	174
PspCI	CACGTG	1 cut(s)	174
PspEI	GGTNACC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	63
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	299
SapI	GCTCTTC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	147, 201
Sau3AI	GATC	3 cut(s)	280, 387, 393
SchI	GAGTC	2 cut(s)	118, 188
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	8 cut(s)	49, 67, 145, 164, 176, 311, 321, 371
SmiMI	CAYNNNNRTG	1 cut(s)	299
SsiI	CCGC	4 cut(s)	76, 83, 97, 259
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	3 cut(s)	49, 67, 176
TaqI	TCGA	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	2 cut(s)	147, 201
Tru9I	TTAA	2 cut(s)	147, 201
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	236, 266
Tth111I	GACNNNGTC	1 cut(s)	63
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.