Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8351113.1

Orthogroup ID

OG0010443

Physical Location & Seq

Genomic Coordinates Forward (+)

78 .. 1038

Gene Structure 961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8351113.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgctcaataccgaagtcggcactgttcttgccgtgatccgccgccccagtgaaaccgtctttggcgccgccctggacgacagcattgacccttctcttctccaatccctcaagtcacttcgagccttgatcttcaacccccaacaagaatggcgcaccatagacccttccatttacctctccccattcctcgacgtcatccaaagcgacttcgtccaggccgccgccaccagagtcgccctctccgccaccttgaagattctcaagctcggagtcttcgacgagaagacccccggagccaaggacgccatcaacaccgtcgtcaatgccatcaccacgtgtaggcttgagaagactgatccggtgtcggagggcgccgtgatgatgaacattctgcagcttctgaccggagttatgaaccacagggcttcaatgttgttgtcagaccaagctgtgtgcaccattgtcaacacttgctttcaagtggttcaacaatccacgaaccgaggggacttgcttcagagaaatgctaggtacaccatgcatgagttgatccacatcattttttcgcggttgcctgaggttgagatgagtcacgacgatgaggagactgacaatgaagacgttgatgatggtggtttggatttcggatatggaatgaggtgtgcggttgatatatttcatttcttgtgttctttgctcaatgtggttgaggttgtggagacagaggggtctacagttcaaactgctgatgaagatgtgcagctttttgctttgattttgatcaacaccgcgatcgagttgagtggagatggaattgggacgcattccaagcttttgaggatgatgaaagatgatctgtttcaccatttggtacactatggaacttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0009846 GO:0009856 GO:0012505 GO:0016020 GO:0016192 GO:0019899 GO:0022414 GO:0031984 GO:0032501 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0051020 GO:0051179 GO:0051234 GO:0051704 GO:0065007 GO:0065009 GO:0090406 GO:0098772 GO:0098791 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

DCB Sec7 Sec7_N

Protein Analysis

297

Amino Acids

32.83

Weight (kDa)

4.65

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19610
fragaria_vesca	FvH4_1g05140
malus_domestica	MD02G1050300.v1.1 MD15G1187600.v1.1
prunus_persica	Prupe.7G228800_v2.0.a1
pyrus_communis	pycom02g04190 pycom02g04200 pycom15g16840
rosa_chinensis	RchiOBHm_Chr2g0090771 RchiOBHm_Chr2g0090781
rosa_laevigata	RLG00000016142
rosa_multiflora	Rmu_co8351113.1_g000001 Rmu_ssc0000367.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150830
rosa_rugosa	Rorug02G0010400
rosa_samantha	Rh2AG056400 Rh2BG055100 Rh2CG057500 Rh2DG056000 Rh2DG056100
rosa_wichuraiana	Rw2G004610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	730
AatII	GACGTC	1 cut(s)	198
AccB1I	GGYRCC	2 cut(s)	65, 374
AccI	GTMKAC	1 cut(s)	734
AccII	CGCG	2 cut(s)	571, 794
AciI	CCGC	9 cut(s)	40, 43, 69, 222, 225, 246, 571, 668, 792
AclWI	GGATC	3 cut(s)	31, 353, 547
AcuI	CTGAAG	1 cut(s)	503
AcvI	CACGTG	1 cut(s)	339
AcyI	GRCGYC	4 cut(s)	66, 195, 306, 375
AdeI	CACNNNGTG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	536, 876
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	6 cut(s)	136, 256, 432, 482, 491, 743
AjnI	CCWGG	2 cut(s)	72, 216
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	5 cut(s)	268, 400, 452, 766, 835
AluI	AGCT	5 cut(s)	268, 400, 452, 766, 835
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	2 cut(s)	602, 716
Alw44I	GTGCAC	1 cut(s)	457
AlwI	GGATC	3 cut(s)	31, 353, 547
AlwNI	CAGNNNCTG	1 cut(s)	403
AoxI	GGCC	1 cut(s)	219
ApaLI	GTGCAC	1 cut(s)	457
ApeKI	GCWGC	2 cut(s)	397, 763
AspLEI	GCGC	3 cut(s)	68, 156, 377
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	325, 857
AxyI	CCTNAGG	1 cut(s)	579
BaeGI	GKGCMC	1 cut(s)	461
BanI	GGYRCC	2 cut(s)	65, 374
BbrPI	CACGTG	1 cut(s)	339
BbsI	GAAGAC	4 cut(s)	268, 293, 359, 627
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	409, 775
BccI	CCATC	4 cut(s)	317, 338, 626, 806
BceAI	ACGGC	2 cut(s)	17, 362
BciT130I	CCWGG	2 cut(s)	74, 218
BclI	TGATCA	1 cut(s)	783
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	602, 716
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	2 cut(s)	395, 735
BfoI	RGCGCY	2 cut(s)	69, 378
BisI	GCNGC	6 cut(s)	43, 69, 222, 225, 398, 764
BlsI	GCNGC	6 cut(s)	44, 70, 223, 226, 399, 765
Bme1390I	CCNGG	3 cut(s)	74, 218, 294
BmiI	GGNNCC	3 cut(s)	67, 298, 376
BmrFI	CCNGG	3 cut(s)	74, 218, 294
BmrI	ACTGGG	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	4 cut(s)	268, 293, 359, 627
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
BpuEI	CTTGAG	3 cut(s)	95, 248, 368
BpuMI	CCSGG	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	339
BsaBI	GATNNNNATC	2 cut(s)	557, 782
BsaHI	GRCGYC	4 cut(s)	66, 195, 306, 375
BsaJI	CCNNGG	4 cut(s)	72, 292, 300, 505
BsaWI	WCCGGW	2 cut(s)	361, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	48
Bse21I	CCTNAGG	1 cut(s)	579
Bse8I	GATNNNNATC	2 cut(s)	557, 782
BseBI	CCWGG	2 cut(s)	74, 218
BseDI	CCNNGG	4 cut(s)	72, 292, 300, 505
BseGI	GGATG	2 cut(s)	198, 849
BseJI	GATNNNNATC	2 cut(s)	557, 782
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	620
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	409, 775
BsgI	GTGCAG	1 cut(s)	782
Bsh1236I	CGCG	2 cut(s)	571, 794
Bsh1285I	CGRYCG	1 cut(s)	798
BshFI	GGCC	1 cut(s)	221
BshNI	GGYRCC	2 cut(s)	65, 374
BsiEI	CGRYCG	1 cut(s)	798
BsiHKAI	GWGCWC	1 cut(s)	461
BsiSI	CCGG	3 cut(s)	294, 362, 408
BslFI	GGGAC	2 cut(s)	524, 835
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	2 cut(s)	602, 716
BsmFI	GGGAC	2 cut(s)	524, 835
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	7 cut(s)	36, 129, 358, 552, 783, 795, 856
BspACI	CCGC	9 cut(s)	40, 43, 69, 222, 225, 246, 571, 668, 792
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	2 cut(s)	571, 794
BspLI	GGNNCC	3 cut(s)	67, 298, 376
BspMAI	CTGCAG	1 cut(s)	399
BspPI	GGATC	3 cut(s)	31, 353, 547
BspT107I	GGYRCC	2 cut(s)	65, 374
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	4 cut(s)	72, 292, 300, 505
BssMI	GATC	7 cut(s)	36, 129, 358, 552, 783, 795, 856
BssNI	GRCGYC	4 cut(s)	66, 195, 306, 375
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	74, 218
Bst4CI	ACNGT	4 cut(s)	25, 58, 319, 739
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	4 cut(s)	66, 195, 306, 375
BstBAI	YACGTR	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	579
BstF5I	GGATG	2 cut(s)	198, 849
BstFNI	CGCG	2 cut(s)	571, 794
BstH2I	RGCGCY	2 cut(s)	69, 378
BstHHI	GCGC	3 cut(s)	68, 156, 377
BstKTI	GATC	7 cut(s)	39, 132, 361, 555, 786, 798, 859
BstMAI	GTCTC	2 cut(s)	602, 716
BstMBI	GATC	7 cut(s)	36, 129, 358, 552, 783, 795, 856
BstMCI	CGRYCG	1 cut(s)	798
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 305, 832
BstNI	CCWGG	2 cut(s)	74, 218
BstSCI	CCNGG	3 cut(s)	72, 216, 292
BstSFI	CTRYAG	2 cut(s)	395, 735
BstSLI	GKGCMC	1 cut(s)	461
BstUI	CGCG	2 cut(s)	571, 794
BstV1I	GCAGC	2 cut(s)	409, 775
BstV2I	GAAGAC	4 cut(s)	268, 293, 359, 627
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	198, 849
BtsIMutI	CAGTG	2 cut(s)	21, 55
CaiI	CAGNNNCTG	1 cut(s)	403
CfoI	GCGC	3 cut(s)	68, 156, 377
CseI	GACGC	2 cut(s)	314, 832
Csp6I	GTAC	2 cut(s)	535, 875
CviAII	CATG	2 cut(s)	541, 545
CviQI	GTAC	2 cut(s)	535, 875
DdeI	CTNAG	1 cut(s)	579
DinI	GGCGCC	2 cut(s)	67, 376
DpnI	GATC	7 cut(s)	38, 131, 360, 554, 785, 797, 858
DpnII	GATC	7 cut(s)	36, 129, 358, 552, 783, 795, 856
DraIII	CACNNNGTG	1 cut(s)	339
DrdI	GACNNNNNNGTC	1 cut(s)	730
DseDI	GACNNNNNNGTC	1 cut(s)	730
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	2 cut(s)	29, 235
Eco130I	CCWWGG	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	503
Eco72I	CACGTG	1 cut(s)	339
Eco81I	CCTNAGG	1 cut(s)	579
EcoRII	CCWGG	2 cut(s)	72, 216
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	546
EgeI	GGCGCC	2 cut(s)	67, 376
EheI	GGCGCC	2 cut(s)	67, 376
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	544, 548
FaiI	YATR	7 cut(s)	161, 416, 542, 546, 654, 677, 882
FaqI	GGGAC	2 cut(s)	524, 835
FatI	CATG	2 cut(s)	540, 544
FbaI	TGATCA	1 cut(s)	783
FblI	GTMKAC	1 cut(s)	734
Fnu4HI	GCNGC	6 cut(s)	43, 69, 222, 225, 398, 764
FokI	GGATG	2 cut(s)	185, 856
Fsp4HI	GCNGC	6 cut(s)	43, 69, 222, 225, 398, 764
FspBI	CTAG	1 cut(s)	531
GlaI	GCGC	3 cut(s)	67, 155, 376
GluI	GCNGC	6 cut(s)	43, 69, 222, 225, 398, 764
HaeII	RGCGCY	2 cut(s)	69, 378
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	3 cut(s)	294, 362, 408
HgaI	GACGC	2 cut(s)	314, 832
HhaI	GCGC	3 cut(s)	68, 156, 377
Hin1I	GRCGYC	4 cut(s)	66, 195, 306, 375
Hin1II	CATG	2 cut(s)	544, 548
Hin6I	GCGC	3 cut(s)	66, 154, 375
HinP1I	GCGC	3 cut(s)	66, 154, 375
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	833
HinfI	GANTC	4 cut(s)	234, 259, 273, 592
HpaII	CCGG	3 cut(s)	294, 362, 408
HphI	GGTGA	2 cut(s)	325, 857
Hpy166II	GTNNAC	5 cut(s)	459, 469, 537, 735, 877
Hpy188I	TCNGA	6 cut(s)	272, 370, 405, 445, 522, 650
Hpy188III	TCNNGA	1 cut(s)	596
Hpy8I	GTNNAC	5 cut(s)	459, 469, 537, 735, 877
Hpy99I	CGWCG	4 cut(s)	197, 284, 323, 602
HpyAV	CCTTC	2 cut(s)	102, 177
HpyCH4III	ACNGT	4 cut(s)	25, 58, 319, 739
HpyCH4IV	ACGT	3 cut(s)	195, 338, 624
HpyCH4V	TGCA	4 cut(s)	397, 459, 544, 763
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 305, 832
HpyF3I	CTNAG	1 cut(s)	579
HpySE526I	ACGT	3 cut(s)	195, 338, 624
Hsp92I	GRCGYC	4 cut(s)	66, 195, 306, 375
Hsp92II	CATG	2 cut(s)	544, 548
HspAI	GCGC	3 cut(s)	66, 154, 375
KasI	GGCGCC	2 cut(s)	65, 374
Ksp22I	TGATCA	1 cut(s)	783
Kzo9I	GATC	7 cut(s)	36, 129, 358, 552, 783, 795, 856
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	2 cut(s)	409, 775
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	3 cut(s)	195, 338, 624
MaeIII	GTNAC	2 cut(s)	114, 593
MalI	GATC	7 cut(s)	38, 131, 360, 554, 785, 797, 858
MboI	GATC	7 cut(s)	36, 129, 358, 552, 783, 795, 856
MboII	GAAGA	8 cut(s)	89, 124, 268, 268, 298, 364, 632, 767
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	1 cut(s)	816
Mly113I	GGCGCC	2 cut(s)	66, 375
MlyI	GAGTC	3 cut(s)	243, 282, 601
MmeI	TCCRAC	1 cut(s)	348
Mph1103I	ATGCAT	1 cut(s)	546
MseI	TTAA	1 cut(s)	892
MslI	CAYNNNNRTG	1 cut(s)	600
MspI	CCGG	3 cut(s)	294, 362, 408
MspR9I	CCNGG	3 cut(s)	74, 218, 294
Mva1269I	GAATGC	1 cut(s)	826
MvaI	CCWGG	2 cut(s)	74, 218
MvnI	CGCG	2 cut(s)	571, 794
MwoI	GCNNNNNNNGC	3 cut(s)	245, 305, 832
NarI	GGCGCC	2 cut(s)	66, 375
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	7 cut(s)	36, 129, 358, 552, 783, 795, 856
NlaIII	CATG	2 cut(s)	544, 548
NlaIV	GGNNCC	3 cut(s)	67, 298, 376
NmuCI	GTSAC	2 cut(s)	114, 593
NsiI	ATGCAT	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	1 cut(s)	826
PfeI	GAWTC	1 cut(s)	259
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	6 cut(s)	44, 70, 223, 226, 399, 765
Ple19I	CGATCG	1 cut(s)	798
PleI	GAGTC	3 cut(s)	242, 281, 600
PluTI	GGCGCC	2 cut(s)	69, 378
PmaCI	CACGTG	1 cut(s)	339
PmlI	CACGTG	1 cut(s)	339
PpsI	GAGTC	3 cut(s)	242, 281, 600
Ppu21I	YACGTR	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	72, 216
PspCI	CACGTG	1 cut(s)	339
PspGI	CCWGG	2 cut(s)	72, 216
PspN4I	GGNNCC	3 cut(s)	67, 298, 376
PstI	CTGCAG	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	798
RsaI	GTAC	2 cut(s)	536, 876
RsaNI	GTAC	2 cut(s)	535, 875
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	892
SatI	GCNGC	6 cut(s)	43, 69, 222, 225, 398, 764
Sau3AI	GATC	7 cut(s)	36, 129, 358, 552, 783, 795, 856
SchI	GAGTC	3 cut(s)	243, 282, 601
ScrFI	CCNGG	3 cut(s)	74, 218, 294
SduI	GDGCHC	1 cut(s)	461
SfcI	CTRYAG	2 cut(s)	395, 735
SfoI	GGCGCC	2 cut(s)	67, 376
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	3 cut(s)	110, 263, 347
SmoI	CTYRAG	3 cut(s)	110, 263, 347
Sse9I	AATT	1 cut(s)	816
SsiI	CCGC	9 cut(s)	40, 43, 69, 222, 225, 246, 571, 668, 792
SspDI	GGCGCC	2 cut(s)	65, 374
SspMI	CTAG	1 cut(s)	531
StyD4I	CCNGG	3 cut(s)	72, 216, 292
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	4 cut(s)	25, 58, 319, 739
TaiI	ACGT	3 cut(s)	198, 341, 627
TaqI	TCGA	4 cut(s)	121, 192, 279, 798
TasI	AATT	1 cut(s)	816
TauI	GCSGC	4 cut(s)	45, 71, 224, 227
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	892
Tru9I	TTAA	1 cut(s)	892
TscAI	CASTG	2 cut(s)	28, 55
TseFI	GTSAC	2 cut(s)	114, 593
TseI	GCWGC	2 cut(s)	397, 763
Tsp45I	GTSAC	2 cut(s)	114, 593
TspDTI	ATGAA	6 cut(s)	401, 431, 633, 671, 768, 863
TspRI	CASTG	2 cut(s)	28, 55
Tth111I	GACNNNGTC	1 cut(s)	212
VneI	GTGCAC	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	734
XspI	CTAG	1 cut(s)	531
ZraI	GACGTC	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.