Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010443

Physical Location & Seq

Genomic Coordinates Forward (+)

4499818 .. 4502502

Gene Structure 2685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46601

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2463 bp

ATGGAGAATCATGACAAAAAACAAGCGATCAAGCTCAAAAGGAAAGAACTGGGACTCTCTTGCATGCTCAATACCGAAGTCGGCACTGTTCTTGCCGTGATCCGCCGCCCCAGTGAAACCGTCTTCGGCGCCGCCCCGGACGACAGCATTGACCCTTCTCTTCTCCAATCCCTCAAGTCACTTCGAGCCTTGATCTTCAACCCCCAACAAGAATGGCGCACCATAGACCCTTCCATTTACCTCTCCCCATTCCTCGACGTCATCCAAAGCGACTTCGTCCAGGCCTCCGCCACCAGAGTCGCCCTCTCCGCCACCTTGAAGATTCTCAAGCTCGGAGTCTTCGACGAGAAGACCCCCGGAGCCAAGGACGCCATCAACACCGTCGTCAATGCCATCACCACGTGTAGGCTTGAGAAGACTGATCCGGTGTCGGAGGGCGCCGTGATGATGAACATTCTGCAGCTTCTGACCGGAGTTATGAACCACAGGGCTTCAATGTTGTTGTCAGACCAAGCTGTGTGCACCATTGTCAACACTTGCTTTCAAGTGGTTCAACAATCCACGAACCGAGGCGACTTGCTTCAGAGAAATGCTAGGTACACCATGCATGAGTTGATCCACATCATTTTTTCGCGGTTGCCTGAGGTTGAGATGAGTCACGAAGATGAGGAGACTGACAATGAAGACGTTGATGATGGTGGTTTGGATTTCGGATATGGAATGAGGTGTGCGGTTGATATATTTCATTTCTTGTGTTCTTTGCTCAATGTGGTTGAGGTTGTGGAGACAGAGGGGTCTACAGTTCAAACTGCTGATGAAGATGTGCAGCTTTTTGCTTTGGTTTTGATCAACACCGCGATCGAGTTGAGTGGAGATGGAATTGGGACGCATTCCAAGCTTTTGAGGATGATGAAAGATGATCTGTTTCACCATTTGGTACACTATGGAACTTGTTCAAGCCCGGTTGTGTTCTCCATGATTTGCAGTACGGTTTTGAACATGTATCACTTTCTTCGCAGGTACATTCGACTCCAATTAGAATCCTTCTTTGCATTTGTGCTGTTTAGAGTCGCAGGAGCTCCAGGAGCAACAACCCAACTTCAAGAAGTTGCACTGGAAGGAATTATAAACTTCTGCAGGCAACCGACATTTATAGTCGAAGTTTATGTGAACTATGACTGTGATCCCTTTTGCCATAATGTATTCGAGGAGATTGGGAAGTTGCTTTGCAAGCAGTCATTTCCGGTGGGTGGCCCTTTGTCAAGTTTACAGATACAAGCGTTTGAAGGGTTAGTAGTCATGATCCACAACATTGCTGATAGTATTGATAAAGAAAATGATACAAGCCCTTCAGGGCCATATCCCGTTGAAATTACTGAATATACGCCATTTTGGGAAGATGAGGCCAAAGAGGATTCGGAAATTTGGGTGGGGTTTGTAAGACTCCGAAAAGCACAGAAGAAGAAAATATTGATTGCTGGACACCATTATAATCGAGATGAAAAGAAGGGAATGGAATACTTAAAACTTACCAAATTAGTCTCTGATCCTCCGGATCCAAAGGCTCTGGCTTTCTTCTTCCGGTACACTCCTGGTCTAGACAAGATGCTGATAGGGGATTATCTTGGTGATCCTGACGAGTTTCATATTGAAGTTCTAAGAGAATATACCGAAACCTTTGGATTTGCAGGCATGAATCTTGACAGTGGTTTACGGACTTTTCTTGAGACTTTCCGTTTACCAGGAGAGTCCCAGAAGATTGAGCGGATTCTCGAAGTATTTTCAGAGAATTTTTATGAACAACAACCTACAGATATTTTTGCAAACAAGGATACGGTGCTCATTCTTTGCTACTCTCTCATTATGCTCAATACTGATCAACACAATCCACAAGTGAAGAAGAAAATGACAGAAGACGAGTTCATCAGGAACAATAGAGCAATCAATGGAGGAAAGGATCTTCCTAGAGAGTATCTATCTGAGCTTTTCCATTCCATCTCACACAATGCATTCACCACGTTTGGTTTGCAAGTAGAAATGAACCCAAGCAAATGGATTGAGTTGATGAACAGAACAAAAACTGTGCAACCTTACTTTCTATGTGAATTTGATCGCCGTCTAGGAAGAGATATGTTTGCTTGCATTGCTGGTCCATCAGTGGCGGCTCTTTCTGCAGTATTTGAGCATGCTGAAGAAGAGGAATTGCTCCATGAATGCATTGAAGGGATGTTCTCGGTGGCCAGGGTAGCTCAGTATGGACTAGAAGACACTCTTGATGAACTTCTTGCCACACTCTCCAAATTCACTACATTGTTGAATCCTTATGCCTCTGCAGAAGAAACCCTGTTTGCTTTTAGCAAAGATTTGAAGCCAAGAATGGCTACACTTGCTGTTTTCACCATTGCAAACAATTTTGGAGAGTCAATTAGAGGGGCTGGAGGAACATTGTTGAATGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0009846 GO:0009856 GO:0012505 GO:0016020 GO:0016192 GO:0019899 GO:0022414 GO:0031984 GO:0032501 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0051020 GO:0051179 GO:0051234 GO:0051704 GO:0065007 GO:0065009 GO:0090406 GO:0098772 GO:0098791 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

DCB Sec7 Sec7_N

Protein Analysis

820

Amino Acids

92.4

Weight (kDa)

4.98

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec7-like_HUS	PF12783	241 - 401	7.9e-37	Mon2/Sec7/BIG1-like, HUS domain
Sec7	PF01369	486 - 670	9.6e-68	Sec7 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19610
fragaria_vesca	FvH4_1g05140
malus_domestica	MD02G1050300.v1.1 MD15G1187600.v1.1
prunus_persica	Prupe.7G228800_v2.0.a1
pyrus_communis	pycom02g04190 pycom02g04200 pycom15g16840
rosa_chinensis	RchiOBHm_Chr2g0090771 RchiOBHm_Chr2g0090781
rosa_laevigata	RLG00000016142
rosa_multiflora	Rmu_co8351113.1_g000001 Rmu_ssc0000367.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150830
rosa_rugosa	Rorug02G0010400
rosa_samantha	Rh2AG056400 Rh2BG055100 Rh2CG057500 Rh2DG056000 Rh2DG056100
rosa_wichuraiana	Rw2G004610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1127, 1491
AasI	GACNNNNNNGTC	1 cut(s)	793
AatII	GACGTC	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	1008
AccB1I	GGYRCC	2 cut(s)	128, 437
AccBSI	CCGCTC	1 cut(s)	1765
AccI	GTMKAC	1 cut(s)	797
AccII	CGCG	2 cut(s)	634, 857
AccIII	TCCGGA	1 cut(s)	1552
AcoI	YGGCCR	1 cut(s)	2238
AcsI	RAATTY	4 cut(s)	1422, 1789, 2105, 2300
AcuI	CTGAAG	3 cut(s)	566, 1335, 2211
AcvI	CACGTG	1 cut(s)	402
AcyI	GRCGYC	4 cut(s)	129, 258, 369, 438
AdeI	CACNNNGTG	1 cut(s)	402
AfaI	GTAC	5 cut(s)	599, 939, 988, 1022, 1586
AfiI	CCNNNNNNNGG	2 cut(s)	405, 1250
AflIII	ACRYGT	2 cut(s)	401, 999
AjnI	CCWGG	5 cut(s)	279, 1081, 1591, 1741, 2240
AluBI	AGCT	9 cut(s)	34, 331, 463, 515, 829, 898, 1079, 1984, 2249
AluI	AGCT	9 cut(s)	34, 331, 463, 515, 829, 898, 1079, 1984, 2249
Alw21I	GWGCWC	3 cut(s)	524, 1081, 1842
Alw26I	GTCTC	4 cut(s)	665, 779, 1546, 1721
Alw44I	GTGCAC	1 cut(s)	520
AlwNI	CAGNNNCTG	1 cut(s)	466
Aor13HI	TCCGGA	1 cut(s)	1552
AoxI	GGCC	5 cut(s)	282, 1252, 1355, 1404, 2238
ApaLI	GTGCAC	1 cut(s)	520
ApeKI	GCWGC	2 cut(s)	460, 826
ApoI	RAATTY	4 cut(s)	1422, 1789, 2105, 2300
Asp700I	GAANNNNTTC	1 cut(s)	952
AspLEI	GCGC	3 cut(s)	131, 219, 440
AspS9I	GGNCC	3 cut(s)	1253, 1355, 2150
AsuC2I	CCSGG	3 cut(s)	137, 357, 962
AsuHPI	GGTGA	5 cut(s)	388, 920, 1640, 2005, 2389
AvaII	GGWCC	1 cut(s)	2150
AxyI	CCTNAGG	1 cut(s)	642
BaeGI	GKGCMC	1 cut(s)	524
BaeI	ACNNNNGTAYC	2 cut(s)	1265, 1298
BalI	TGGCCA	1 cut(s)	2240
BamHI	GGATCC	1 cut(s)	1555
BanI	GGYRCC	2 cut(s)	128, 437
BanII	GRGCYC	1 cut(s)	1081
BbrPI	CACGTG	1 cut(s)	402
BbsI	GAAGAC	7 cut(s)	115, 331, 356, 422, 690, 1920, 2271
Bbv12I	GWGCWC	3 cut(s)	524, 1081, 1842
BbvI	GCAGC	2 cut(s)	472, 838
BccI	CCATC	6 cut(s)	380, 401, 689, 869, 2003, 2161
BceAI	ACGGC	3 cut(s)	80, 425, 2100
BciT130I	CCWGG	5 cut(s)	281, 1083, 1593, 1743, 2242
BciVI	GTATCC	1 cut(s)	1825
BclI	TGATCA	2 cut(s)	846, 1876
BcnI	CCSGG	3 cut(s)	137, 357, 962
BcoDI	GTCTC	4 cut(s)	665, 779, 1546, 1721
BfaI	CTAG	5 cut(s)	594, 1598, 1965, 2120, 2261
BfmI	CTRYAG	6 cut(s)	458, 798, 1135, 1809, 2172, 2331
BfoI	RGCGCY	2 cut(s)	132, 441
BfuAI	ACCTGC	1 cut(s)	1008
BfuI	GTATCC	1 cut(s)	1825
BisI	GCNGC	5 cut(s)	106, 132, 461, 827, 2163
BlsI	GCNGC	5 cut(s)	107, 133, 462, 828, 2164
Bme1390I	CCNGG	8 cut(s)	137, 281, 357, 962, 1083, 1593, 1743, 2242
Bme18I	GGWCC	1 cut(s)	2150
BmgT120I	GGNCC	3 cut(s)	1253, 1355, 2150
BmiI	GGNNCC	4 cut(s)	130, 361, 439, 1557
BmrFI	CCNGG	8 cut(s)	137, 281, 357, 962, 1083, 1593, 1743, 2242
BmrI	ACTGGG	2 cut(s)	59, 105
BmsI	GCATC	1 cut(s)	1596
BmuI	ACTGGG	2 cut(s)	59, 105
BpiI	GAAGAC	7 cut(s)	115, 331, 356, 422, 690, 1920, 2271
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
BpmI	CTGGAG	2 cut(s)	1065, 2457
BpuEI	CTTGAG	4 cut(s)	158, 311, 431, 1745
BpuMI	CCSGG	3 cut(s)	137, 357, 962
BsaAI	YACGTR	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	620
BsaHI	GRCGYC	4 cut(s)	129, 258, 369, 438
BsaJI	CCNNGG	5 cut(s)	135, 355, 363, 568, 2241
BsaWI	WCCGGW	5 cut(s)	424, 470, 1243, 1552, 1581
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 1250
Bse1I	ACTGG	3 cut(s)	54, 111, 1119
Bse21I	CCTNAGG	1 cut(s)	642
Bse3DI	GCAATG	3 cut(s)	1311, 2142, 2400
Bse8I	GATNNNNATC	1 cut(s)	620
BseAI	TCCGGA	1 cut(s)	1552
BseBI	CCWGG	5 cut(s)	281, 1083, 1593, 1743, 2242
BseDI	CCNNGG	5 cut(s)	135, 355, 363, 568, 2241
BseGI	GGATG	3 cut(s)	261, 912, 2232
BseJI	GATNNNNATC	1 cut(s)	620
BseLI	CCNNNNNNNGG	2 cut(s)	405, 1250
BseMI	GCAATG	3 cut(s)	1311, 2142, 2400
BseMII	CTCAG	3 cut(s)	633, 1971, 2264
BseNI	ACTGG	3 cut(s)	54, 111, 1119
BseRI	GAGGAG	2 cut(s)	683, 1223
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	2 cut(s)	472, 838
BsgI	GTGCAG	1 cut(s)	845
Bsh1236I	CGCG	2 cut(s)	634, 857
Bsh1285I	CGRYCG	1 cut(s)	861
BshFI	GGCC	5 cut(s)	284, 1254, 1357, 1406, 2240
BshNI	GGYRCC	2 cut(s)	128, 437
BsiEI	CGRYCG	1 cut(s)	861
BsiHKAI	GWGCWC	3 cut(s)	524, 1081, 1842
BsiSI	CCGG	8 cut(s)	137, 357, 425, 471, 962, 1244, 1553, 1582
BslFI	GGGAC	3 cut(s)	66, 898, 1735
BslI	CCNNNNNNNGG	2 cut(s)	405, 1250
BsmAI	GTCTC	4 cut(s)	665, 779, 1546, 1721
BsmFI	GGGAC	3 cut(s)	66, 898, 1735
BsmI	GAATGC	4 cut(s)	889, 2009, 2219, 2458
BsnI	GGCC	5 cut(s)	284, 1254, 1357, 1406, 2240
Bsp1286I	GDGCHC	3 cut(s)	524, 1081, 1842
Bsp13I	TCCGGA	1 cut(s)	1552
BspANI	GGCC	5 cut(s)	284, 1254, 1357, 1406, 2240
BspCNI	CTCAG	3 cut(s)	634, 1972, 2263
BspEI	TCCGGA	1 cut(s)	1552
BspFNI	CGCG	2 cut(s)	634, 857
BspHI	TCATGA	2 cut(s)	10, 1299
BspLI	GGNNCC	4 cut(s)	130, 361, 439, 1557
BspMAI	CTGCAG	4 cut(s)	462, 1139, 2176, 2335
BspMI	ACCTGC	1 cut(s)	1008
BspT107I	GGYRCC	2 cut(s)	128, 437
BsrBI	CCGCTC	1 cut(s)	1765
BsrDI	GCAATG	3 cut(s)	1311, 2142, 2400
BsrI	ACTGG	3 cut(s)	54, 111, 1119
BssECI	CCNNGG	5 cut(s)	135, 355, 363, 568, 2241
BssNI	GRCGYC	4 cut(s)	129, 258, 369, 438
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	5 cut(s)	281, 1083, 1593, 1743, 2242
Bst4CI	ACNGT	9 cut(s)	88, 121, 382, 802, 991, 1181, 1706, 1837, 2083
Bst6I	CTCTTC	3 cut(s)	165, 2119, 2190
BstACI	GRCGYC	4 cut(s)	129, 258, 369, 438
BstBAI	YACGTR	1 cut(s)	402
BstC8I	GCNNGC	6 cut(s)	65, 1139, 1232, 1690, 2140, 2187
BstDEI	CTNAG	4 cut(s)	642, 1658, 1980, 2250
BstF5I	GGATG	3 cut(s)	261, 912, 2232
BstFNI	CGCG	2 cut(s)	634, 857
BstH2I	RGCGCY	2 cut(s)	132, 441
BstHHI	GCGC	3 cut(s)	131, 219, 440
BstMAI	GTCTC	4 cut(s)	665, 779, 1546, 1721
BstMCI	CGRYCG	1 cut(s)	861
BstMWI	GCNNNNNNNGC	9 cut(s)	308, 368, 895, 1085, 1231, 2144, 2171, 2246, 2387
BstNI	CCWGG	5 cut(s)	281, 1083, 1593, 1743, 2242
BstNSI	RCATGY	3 cut(s)	67, 1003, 2189
BstSCI	CCNGG	8 cut(s)	135, 279, 355, 960, 1081, 1591, 1741, 2240
BstSFI	CTRYAG	6 cut(s)	458, 798, 1135, 1809, 2172, 2331
BstSLI	GKGCMC	1 cut(s)	524
BstUI	CGCG	2 cut(s)	634, 857
BstV1I	GCAGC	2 cut(s)	472, 838
BstV2I	GAAGAC	7 cut(s)	115, 331, 356, 422, 690, 1920, 2271
BstX2I	RGATCY	2 cut(s)	1555, 1957
BstXI	CCANNNNNNTGG	1 cut(s)	2052
BstYI	RGATCY	2 cut(s)	1555, 1957
Bsu36I	CCTNAGG	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	1825
BsuRI	GGCC	5 cut(s)	284, 1254, 1357, 1406, 2240
BtsCI	GGATG	3 cut(s)	261, 912, 2232
BtsIMutI	CAGTG	5 cut(s)	84, 118, 1112, 1711, 2163
BveI	ACCTGC	1 cut(s)	1008
Cac8I	GCNNGC	6 cut(s)	65, 1139, 1232, 1690, 2140, 2187
CaiI	CAGNNNCTG	1 cut(s)	466
CciI	TCATGA	2 cut(s)	10, 1299
CfoI	GCGC	3 cut(s)	131, 219, 440
Cfr13I	GGNCC	3 cut(s)	1253, 1355, 2150
CseI	GACGC	2 cut(s)	377, 895
Csp6I	GTAC	5 cut(s)	598, 938, 987, 1021, 1585
CviQI	GTAC	5 cut(s)	598, 938, 987, 1021, 1585
DdeI	CTNAG	4 cut(s)	642, 1658, 1980, 2250
DinI	GGCGCC	2 cut(s)	130, 439
DraIII	CACNNNGTG	1 cut(s)	402
DrdI	GACNNNNNNGTC	1 cut(s)	793
DseDI	GACNNNNNNGTC	1 cut(s)	793
EaeI	YGGCCR	1 cut(s)	2238
Eam1104I	CTCTTC	3 cut(s)	165, 2119, 2190
EarI	CTCTTC	3 cut(s)	165, 2119, 2190
EciI	GGCGGA	3 cut(s)	92, 277, 298
Ecl136II	GAGCTC	1 cut(s)	1079
Eco130I	CCWWGG	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	1081
Eco47I	GGWCC	1 cut(s)	2150
Eco53kI	GAGCTC	1 cut(s)	1079
Eco57I	CTGAAG	3 cut(s)	566, 1335, 2211
Eco72I	CACGTG	1 cut(s)	402
Eco81I	CCTNAGG	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	1079
EcoRII	CCWGG	5 cut(s)	279, 1081, 1591, 1741, 2240
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	3 cut(s)	609, 2011, 2219
EcoT38I	GRGCYC	1 cut(s)	1081
EgeI	GGCGCC	2 cut(s)	130, 439
EheI	GGCGCC	2 cut(s)	130, 439
ErhI	CCWWGG	1 cut(s)	363
FalI	AAGNNNNNCTT	2 cut(s)	2256, 2288
FaqI	GGGAC	3 cut(s)	66, 898, 1735
FbaI	TGATCA	2 cut(s)	846, 1876
FblI	GTMKAC	1 cut(s)	797
Fnu4HI	GCNGC	5 cut(s)	106, 132, 461, 827, 2163
FokI	GGATG	3 cut(s)	248, 919, 2239
FriOI	GRGCYC	1 cut(s)	1081
Fsp4HI	GCNGC	5 cut(s)	106, 132, 461, 827, 2163
FspBI	CTAG	5 cut(s)	594, 1598, 1965, 2120, 2261
GlaI	GCGC	3 cut(s)	130, 218, 439
GluI	GCNGC	5 cut(s)	106, 132, 461, 827, 2163
GsuI	CTGGAG	2 cut(s)	1065, 2457
HaeII	RGCGCY	2 cut(s)	132, 441
HaeIII	GGCC	5 cut(s)	284, 1254, 1357, 1406, 2240
HapII	CCGG	8 cut(s)	137, 357, 425, 471, 962, 1244, 1553, 1582
HgaI	GACGC	2 cut(s)	377, 895
HhaI	GCGC	3 cut(s)	131, 219, 440
Hin1I	GRCGYC	4 cut(s)	129, 258, 369, 438
Hin6I	GCGC	3 cut(s)	129, 217, 438
HinP1I	GCGC	3 cut(s)	129, 217, 438
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	1 cut(s)	896
HpaII	CCGG	8 cut(s)	137, 357, 425, 471, 962, 1244, 1553, 1582
HphI	GGTGA	5 cut(s)	388, 920, 1640, 2005, 2389
Hpy99I	CGWCG	3 cut(s)	260, 347, 386
HpyAV	CCTTC	8 cut(s)	165, 240, 1054, 1112, 1280, 1359, 1501, 2216
HpyCH4III	ACNGT	9 cut(s)	88, 121, 382, 802, 991, 1181, 1706, 1837, 2083
HpyCH4IV	ACGT	4 cut(s)	258, 401, 687, 2018
HpyF10VI	GCNNNNNNNGC	9 cut(s)	308, 368, 895, 1085, 1231, 2144, 2171, 2246, 2387
HpyF3I	CTNAG	4 cut(s)	642, 1658, 1980, 2250
HpySE526I	ACGT	4 cut(s)	258, 401, 687, 2018
Hsp92I	GRCGYC	4 cut(s)	129, 258, 369, 438
HspAI	GCGC	3 cut(s)	129, 217, 438
KasI	GGCGCC	2 cut(s)	128, 437
Kpn2I	TCCGGA	1 cut(s)	1552
Ksp22I	TGATCA	2 cut(s)	846, 1876
LmnI	GCTCC	5 cut(s)	359, 1076, 1084, 1085, 2211
Lsp1109I	GCAGC	2 cut(s)	472, 838
LweI	GCATC	1 cut(s)	1596
MaeI	CTAG	5 cut(s)	594, 1598, 1965, 2120, 2261
MaeII	ACGT	4 cut(s)	258, 401, 687, 2018
MaeIII	GTNAC	2 cut(s)	177, 656
MbiI	CCGCTC	1 cut(s)	1765
MflI	RGATCY	2 cut(s)	1555, 1957
MhlI	GDGCHC	3 cut(s)	524, 1081, 1842
MlsI	TGGCCA	1 cut(s)	2240
MluNI	TGGCCA	1 cut(s)	2240
Mly113I	GGCGCC	2 cut(s)	129, 438
MlyI	GAGTC	9 cut(s)	48, 306, 345, 664, 1023, 1077, 1437, 1757, 2429
MmeI	TCCRAC	1 cut(s)	411
Mox20I	TGGCCA	1 cut(s)	2240
Mph1103I	ATGCAT	3 cut(s)	609, 2011, 2219
MroI	TCCGGA	1 cut(s)	1552
MroXI	GAANNNNTTC	1 cut(s)	952
MscI	TGGCCA	1 cut(s)	2240
MseI	TTAA	1 cut(s)	1523
MslI	CAYNNNNRTG	1 cut(s)	663
Msp20I	TGGCCA	1 cut(s)	2240
MspI	CCGG	8 cut(s)	137, 357, 425, 471, 962, 1244, 1553, 1582
MspR9I	CCNGG	8 cut(s)	137, 281, 357, 962, 1083, 1593, 1743, 2242
Mva1269I	GAATGC	4 cut(s)	889, 2009, 2219, 2458
MvaI	CCWGG	5 cut(s)	281, 1083, 1593, 1743, 2242
MvnI	CGCG	2 cut(s)	634, 857
MwoI	GCNNNNNNNGC	9 cut(s)	308, 368, 895, 1085, 1231, 2144, 2171, 2246, 2387
NarI	GGCGCC	2 cut(s)	129, 438
NciI	CCSGG	3 cut(s)	137, 357, 962
NlaIV	GGNNCC	4 cut(s)	130, 361, 439, 1557
NmuCI	GTSAC	2 cut(s)	177, 656
NsiI	ATGCAT	3 cut(s)	609, 2011, 2219
NspI	RCATGY	3 cut(s)	67, 1003, 2189
PaeI	GCATGC	2 cut(s)	67, 2189
PagI	TCATGA	2 cut(s)	10, 1299
PceI	AGGCCT	1 cut(s)	284
PciI	ACATGT	1 cut(s)	999
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	4 cut(s)	889, 2009, 2219, 2458
PdmI	GAANNNNTTC	1 cut(s)	952
PfeI	GAWTC	7 cut(s)	7, 322, 1040, 1415, 1696, 1768, 2317
PflFI	GACNNNGTC	1 cut(s)	275
PfoI	TCCNGGA	1 cut(s)	1081
PkrI	GCNGC	5 cut(s)	107, 133, 462, 828, 2164
Ple19I	CGATCG	1 cut(s)	861
PleI	GAGTC	9 cut(s)	48, 305, 344, 663, 1023, 1076, 1437, 1756, 2428
PluTI	GGCGCC	2 cut(s)	132, 441
PmaCI	CACGTG	1 cut(s)	402
PmlI	CACGTG	1 cut(s)	402
PpsI	GAGTC	9 cut(s)	48, 305, 344, 663, 1023, 1076, 1437, 1756, 2428
Ppu21I	YACGTR	1 cut(s)	402
PscI	ACATGT	1 cut(s)	999
PsiI	TTATAA	2 cut(s)	1127, 1491
Psp124BI	GAGCTC	1 cut(s)	1081
Psp6I	CCWGG	5 cut(s)	279, 1081, 1591, 1741, 2240
PspCI	CACGTG	1 cut(s)	402
PspGI	CCWGG	5 cut(s)	279, 1081, 1591, 1741, 2240
PspN4I	GGNNCC	4 cut(s)	130, 361, 439, 1557
PspPI	GGNCC	3 cut(s)	1253, 1355, 2150
PstI	CTGCAG	4 cut(s)	462, 1139, 2176, 2335
PstNI	CAGNNNCTG	1 cut(s)	466
PsuI	RGATCY	2 cut(s)	1555, 1957
PsyI	GACNNNGTC	1 cut(s)	275
PvuI	CGATCG	1 cut(s)	861
RsaI	GTAC	5 cut(s)	599, 939, 988, 1022, 1586
RsaNI	GTAC	5 cut(s)	598, 938, 987, 1021, 1585
RseI	CAYNNNNRTG	1 cut(s)	663
SacI	GAGCTC	1 cut(s)	1081
SaqAI	TTAA	1 cut(s)	1523
SatI	GCNGC	5 cut(s)	106, 132, 461, 827, 2163
Sau96I	GGNCC	3 cut(s)	1253, 1355, 2150
SchI	GAGTC	9 cut(s)	48, 306, 345, 664, 1023, 1077, 1437, 1757, 2429
ScrFI	CCNGG	8 cut(s)	137, 281, 357, 962, 1083, 1593, 1743, 2242
SduI	GDGCHC	3 cut(s)	524, 1081, 1842
SfaNI	GCATC	1 cut(s)	1596
SfcI	CTRYAG	6 cut(s)	458, 798, 1135, 1809, 2172, 2331
SfoI	GGCGCC	2 cut(s)	130, 439
SinI	GGWCC	1 cut(s)	2150
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	4 cut(s)	173, 326, 410, 1724
SmoI	CTYRAG	4 cut(s)	173, 326, 410, 1724
SphI	GCATGC	2 cut(s)	67, 2189
SseBI	AGGCCT	1 cut(s)	284
SspDI	GGCGCC	2 cut(s)	128, 437
SspI	AATATT	1 cut(s)	1470
SspMI	CTAG	5 cut(s)	594, 1598, 1965, 2120, 2261
SstI	GAGCTC	1 cut(s)	1081
StuI	AGGCCT	1 cut(s)	284
StyD4I	CCNGG	8 cut(s)	135, 279, 355, 960, 1081, 1591, 1741, 2240
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	9 cut(s)	88, 121, 382, 802, 991, 1181, 1706, 1837, 2083
TaiI	ACGT	4 cut(s)	261, 404, 690, 2021
TaqI	TCGA	9 cut(s)	184, 255, 342, 861, 1027, 1158, 1206, 1495, 1773
TauI	GCSGC	3 cut(s)	108, 134, 2165
TfiI	GAWTC	7 cut(s)	7, 322, 1040, 1415, 1696, 1768, 2317
Tru1I	TTAA	1 cut(s)	1523
Tru9I	TTAA	1 cut(s)	1523
TscAI	CASTG	5 cut(s)	91, 118, 1119, 1711, 2163
TseFI	GTSAC	2 cut(s)	177, 656
TseI	GCWGC	2 cut(s)	460, 826
Tsp45I	GTSAC	2 cut(s)	177, 656
TspGWI	ACGGA	2 cut(s)	1724, 1729
TspRI	CASTG	5 cut(s)	91, 118, 1119, 1711, 2163
Tth111I	GACNNNGTC	1 cut(s)	275
VneI	GTGCAC	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	2150
XapI	RAATTY	4 cut(s)	1422, 1789, 2105, 2300
XbaI	TCTAGA	1 cut(s)	1597
XceI	RCATGY	3 cut(s)	67, 1003, 2189
XmiI	GTMKAC	1 cut(s)	797
XmnI	GAANNNNTTC	1 cut(s)	952
XspI	CTAG	5 cut(s)	594, 1598, 1965, 2120, 2261
ZraI	GACGTC	1 cut(s)	259
Zsp2I	ATGCAT	3 cut(s)	609, 2011, 2219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.