Rh2DG056000

ARF guanine-nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
4077774 .. 4078909
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG056000.1

Sequence Viewer

Length: 1005 bp
ATGGAGAATCATGACACAAAACAAGCGATCAAGCTCAAAAGGAAAGAGCTGGGACTCTCTTGCATGCTCAATACCGAAGTCGGCACTGTTCTTGCCGTGATCCGCCGCCCCAGTGAAACCGTCTTTGGCGCCGCCCCGGACGACAGCATTGACCCTTCTCTTCTCCAATCCCTCAAGTCACTTCGAGCCTTGATCTTCAACCCCCAACAAGAATGGCGCACCATAGACCCTTCCATTTACCTCTCCCCATTCCTCGACGTCATCCAAAGCGACTTCGTCCAGGCCGCCGCCACCAGAGTCGCCCTCTCCGCCACCTTGAAGATTCTCAAGCTCGGAGTCTTCGACGAGAAGACCCCCGGAGCCAAGGACGCCATCAACACCGTCGTCAATGCCATCACCACGTGTAGGCTTGAGAAGACTGATCCGGTGTCGGAGGGCGCCGTGATGATGAACATTCTGCAGCTTCTGACCGGAGTTATGAACCACAGGGCTTCAATGTTGTTGTCAGACCAAGCTGTGTGCACCATTGTCAACACTTGCTTTCAAGTGGTTCAACAATCCACGAACCGAGGGGACTTGCTTCAGAGAAATGCTAGGTACACCATGCATGAGTTGATCCACATCATTTTTTCGCGGTTGCCTGAGGTTGAGATGAGTCACGACGATGAGGAGACTGACAATGAAGACGTTGATGATGGTGGTTTGGATTTCGGATATGGAATGAGGTGTGCGGTTGATATATTTCATTTCTTGTGTTCTTTGCTCAATGTGGTTGAGGTTGTGGAGACAGAGGGGTCTACAGTTCAAACTGCTGATGAAGATGTGCAGCTTTTTGCTTTGATTTTGATCAACACCGCGATCGAGTTGAGTGGAGATGGAATTGGGACGCATTCCAAGCTTTTGAGGATGATGAAAGATGATCTGTTTCACCATTTGGTACACTATGGAACTTGTTCAAGCCCGGTTGTGTTCTCCATGATTTGCAGTACATTCGACTCCAATTAG

Protein Analysis

334

Amino Acids

36.94

Weight (kDa)

4.81

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 241 - 331 1.6e-15 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 793
AatII GACGTC 1 cut(s) 261
AccB1I GGYRCC 2 cut(s) 128, 437
AccI GTMKAC 1 cut(s) 797
AccII CGCG 2 cut(s) 634, 857
AciI CCGC 9 cut(s) 103, 106, 132, 285, 288, 309, 634, 731, 855
AclWI GGATC 3 cut(s) 94, 416, 610
AcuI CTGAAG 1 cut(s) 566
AcvI CACGTG 1 cut(s) 402
AcyI GRCGYC 4 cut(s) 129, 258, 369, 438
AdeI CACNNNGTG 1 cut(s) 402
AfaI GTAC 3 cut(s) 599, 939, 988
AfiI CCNNNNNNNGG 1 cut(s) 405
AflIII ACRYGT 1 cut(s) 401
AgsI TTSAA 7 cut(s) 199, 319, 495, 545, 554, 806, 957
AjnI CCWGG 1 cut(s) 279
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 7 cut(s) 34, 49, 331, 463, 515, 829, 898
AluI AGCT 7 cut(s) 34, 49, 331, 463, 515, 829, 898
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 2 cut(s) 665, 779
Alw44I GTGCAC 1 cut(s) 520
AlwI GGATC 3 cut(s) 94, 416, 610
AlwNI CAGNNNCTG 1 cut(s) 466
AoxI GGCC 1 cut(s) 282
ApaLI GTGCAC 1 cut(s) 520
ApeKI GCWGC 2 cut(s) 460, 826
Asp700I GAANNNNTTC 1 cut(s) 952
AspLEI GCGC 3 cut(s) 131, 219, 440
AsuC2I CCSGG 3 cut(s) 137, 357, 962
AsuHPI GGTGA 2 cut(s) 388, 920
AxyI CCTNAGG 1 cut(s) 642
BaeGI GKGCMC 1 cut(s) 524
BanI GGYRCC 2 cut(s) 128, 437
BbrPI CACGTG 1 cut(s) 402
BbsI GAAGAC 4 cut(s) 331, 356, 422, 690
Bbv12I GWGCWC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 472, 838
BccI CCATC 4 cut(s) 380, 401, 689, 869
BceAI ACGGC 2 cut(s) 80, 425
BcgI CGANNNNNNTGC 1 cut(s) 973
BciT130I CCWGG 1 cut(s) 281
BclI TGATCA 1 cut(s) 846
BcnI CCSGG 3 cut(s) 137, 357, 962
BcoDI GTCTC 2 cut(s) 665, 779
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 2 cut(s) 458, 798
BfoI RGCGCY 2 cut(s) 132, 441
BisI GCNGC 6 cut(s) 106, 132, 285, 288, 461, 827
BlsI GCNGC 6 cut(s) 107, 133, 286, 289, 462, 828
Bme1390I CCNGG 4 cut(s) 137, 281, 357, 962
BmiI GGNNCC 3 cut(s) 130, 361, 439
BmrFI CCNGG 4 cut(s) 137, 281, 357, 962
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
BpiI GAAGAC 4 cut(s) 331, 356, 422, 690
BplI GAGNNNNNCTC 2 cut(s) 288, 320
BpuEI CTTGAG 3 cut(s) 158, 311, 431
BpuMI CCSGG 3 cut(s) 137, 357, 962
BsaAI YACGTR 1 cut(s) 402
BsaBI GATNNNNATC 2 cut(s) 620, 845
BsaHI GRCGYC 4 cut(s) 129, 258, 369, 438
BsaJI CCNNGG 4 cut(s) 135, 355, 363, 568
BsaWI WCCGGW 2 cut(s) 424, 470
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 1 cut(s) 111
Bse21I CCTNAGG 1 cut(s) 642
Bse8I GATNNNNATC 2 cut(s) 620, 845
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 4 cut(s) 135, 355, 363, 568
BseGI GGATG 2 cut(s) 261, 912
BseJI GATNNNNATC 2 cut(s) 620, 845
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMII CTCAG 1 cut(s) 633
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 683
BseSI GKGCMC 1 cut(s) 524
BseXI GCAGC 2 cut(s) 472, 838
BseYI CCCAGC 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 845
Bsh1236I CGCG 2 cut(s) 634, 857
Bsh1285I CGRYCG 1 cut(s) 861
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 2 cut(s) 128, 437
BsiEI CGRYCG 1 cut(s) 861
BsiHKAI GWGCWC 1 cut(s) 524
BsiSI CCGG 5 cut(s) 137, 357, 425, 471, 962
BslFI GGGAC 3 cut(s) 66, 587, 898
BslI CCNNNNNNNGG 1 cut(s) 405
BsmAI GTCTC 2 cut(s) 665, 779
BsmFI GGGAC 3 cut(s) 66, 587, 898
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 8 cut(s) 27, 99, 192, 421, 615, 846, 858, 919
BspACI CCGC 9 cut(s) 103, 106, 132, 285, 288, 309, 634, 731, 855
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 634
BspFNI CGCG 2 cut(s) 634, 857
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 3 cut(s) 130, 361, 439
BspMAI CTGCAG 1 cut(s) 462
BspPI GGATC 3 cut(s) 94, 416, 610
BspT107I GGYRCC 2 cut(s) 128, 437
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 4 cut(s) 135, 355, 363, 568
BssMI GATC 8 cut(s) 27, 99, 192, 421, 615, 846, 858, 919
BssNI GRCGYC 4 cut(s) 129, 258, 369, 438
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 4 cut(s) 88, 121, 382, 802
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 4 cut(s) 129, 258, 369, 438
BstBAI YACGTR 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 642
BstF5I GGATG 2 cut(s) 261, 912
BstFNI CGCG 2 cut(s) 634, 857
BstH2I RGCGCY 2 cut(s) 132, 441
BstHHI GCGC 3 cut(s) 131, 219, 440
BstKTI GATC 8 cut(s) 30, 102, 195, 424, 618, 849, 861, 922
BstMAI GTCTC 2 cut(s) 665, 779
BstMBI GATC 8 cut(s) 27, 99, 192, 421, 615, 846, 858, 919
BstMCI CGRYCG 1 cut(s) 861
BstMWI GCNNNNNNNGC 3 cut(s) 308, 368, 895
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 4 cut(s) 135, 279, 355, 960
BstSFI CTRYAG 2 cut(s) 458, 798
BstSLI GKGCMC 1 cut(s) 524
BstUI CGCG 2 cut(s) 634, 857
BstV1I GCAGC 2 cut(s) 472, 838
BstV2I GAAGAC 4 cut(s) 331, 356, 422, 690
Bsu36I CCTNAGG 1 cut(s) 642
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 2 cut(s) 261, 912
BtsIMutI CAGTG 2 cut(s) 84, 118
Cac8I GCNNGC 1 cut(s) 65
CaiI CAGNNNCTG 1 cut(s) 466
CciI TCATGA 1 cut(s) 10
CfoI GCGC 3 cut(s) 131, 219, 440
CseI GACGC 2 cut(s) 377, 895
Csp6I GTAC 3 cut(s) 598, 938, 987
CviAII CATG 5 cut(s) 11, 64, 604, 608, 976
CviQI GTAC 3 cut(s) 598, 938, 987
DdeI CTNAG 1 cut(s) 642
DinI GGCGCC 2 cut(s) 130, 439
DpnI GATC 8 cut(s) 29, 101, 194, 423, 617, 848, 860, 921
DpnII GATC 8 cut(s) 27, 99, 192, 421, 615, 846, 858, 919
DraIII CACNNNGTG 1 cut(s) 402
DrdI GACNNNNNNGTC 1 cut(s) 793
DseDI GACNNNNNNGTC 1 cut(s) 793
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
EciI GGCGGA 2 cut(s) 92, 298
Eco130I CCWWGG 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 566
Eco72I CACGTG 1 cut(s) 402
Eco81I CCTNAGG 1 cut(s) 642
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 363
EcoT22I ATGCAT 1 cut(s) 609
EgeI GGCGCC 2 cut(s) 130, 439
EheI GGCGCC 2 cut(s) 130, 439
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 5 cut(s) 14, 67, 607, 611, 979
FaqI GGGAC 3 cut(s) 66, 587, 898
FatI CATG 5 cut(s) 10, 63, 603, 607, 975
FbaI TGATCA 1 cut(s) 846
FblI GTMKAC 1 cut(s) 797
Fnu4HI GCNGC 6 cut(s) 106, 132, 285, 288, 461, 827
FokI GGATG 2 cut(s) 248, 919
Fsp4HI GCNGC 6 cut(s) 106, 132, 285, 288, 461, 827
FspBI CTAG 1 cut(s) 594
GlaI GCGC 3 cut(s) 130, 218, 439
GluI GCNGC 6 cut(s) 106, 132, 285, 288, 461, 827
GsaI CCCAGC 1 cut(s) 53
HaeII RGCGCY 2 cut(s) 132, 441
HaeIII GGCC 1 cut(s) 284
HapII CCGG 5 cut(s) 137, 357, 425, 471, 962
HgaI GACGC 2 cut(s) 377, 895
HhaI GCGC 3 cut(s) 131, 219, 440
Hin1I GRCGYC 4 cut(s) 129, 258, 369, 438
Hin1II CATG 5 cut(s) 14, 67, 607, 611, 979
Hin6I GCGC 3 cut(s) 129, 217, 438
HinP1I GCGC 3 cut(s) 129, 217, 438
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 896
HinfI GANTC 7 cut(s) 7, 54, 297, 322, 336, 655, 995
HpaII CCGG 5 cut(s) 137, 357, 425, 471, 962
HphI GGTGA 2 cut(s) 388, 920
Hpy166II GTNNAC 5 cut(s) 522, 532, 600, 798, 940
Hpy188I TCNGA 6 cut(s) 335, 433, 468, 508, 585, 713
Hpy188III TCNNGA 2 cut(s) 11, 659
Hpy8I GTNNAC 5 cut(s) 522, 532, 600, 798, 940
Hpy99I CGWCG 4 cut(s) 260, 347, 386, 665
HpyAV CCTTC 2 cut(s) 165, 240
HpyCH4III ACNGT 4 cut(s) 88, 121, 382, 802
HpyCH4IV ACGT 3 cut(s) 258, 401, 687
HpyCH4V TGCA 6 cut(s) 63, 460, 522, 607, 826, 984
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 368, 895
HpyF3I CTNAG 1 cut(s) 642
HpySE526I ACGT 3 cut(s) 258, 401, 687
Hsp92I GRCGYC 4 cut(s) 129, 258, 369, 438
Hsp92II CATG 5 cut(s) 14, 67, 607, 611, 979
HspAI GCGC 3 cut(s) 129, 217, 438
KasI GGCGCC 2 cut(s) 128, 437
Ksp22I TGATCA 1 cut(s) 846
Kzo9I GATC 8 cut(s) 27, 99, 192, 421, 615, 846, 858, 919
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 2 cut(s) 472, 838
MaeI CTAG 1 cut(s) 594
MaeII ACGT 3 cut(s) 258, 401, 687
MaeIII GTNAC 2 cut(s) 177, 656
MalI GATC 8 cut(s) 29, 101, 194, 423, 617, 848, 860, 921
MboI GATC 8 cut(s) 27, 99, 192, 421, 615, 846, 858, 919
MboII GAAGA 8 cut(s) 152, 187, 331, 331, 361, 427, 695, 830
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 2 cut(s) 879, 1000
Mly113I GGCGCC 2 cut(s) 129, 438
MlyI GAGTC 5 cut(s) 48, 306, 345, 664, 989
MmeI TCCRAC 1 cut(s) 411
Mph1103I ATGCAT 1 cut(s) 609
MroXI GAANNNNTTC 1 cut(s) 952
MslI CAYNNNNRTG 1 cut(s) 663
MspI CCGG 5 cut(s) 137, 357, 425, 471, 962
MspR9I CCNGG 4 cut(s) 137, 281, 357, 962
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 2 cut(s) 634, 857
MwoI GCNNNNNNNGC 3 cut(s) 308, 368, 895
NarI GGCGCC 2 cut(s) 129, 438
NciI CCSGG 3 cut(s) 137, 357, 962
NdeII GATC 8 cut(s) 27, 99, 192, 421, 615, 846, 858, 919
NlaIII CATG 5 cut(s) 14, 67, 607, 611, 979
NlaIV GGNNCC 3 cut(s) 130, 361, 439
NmuCI GTSAC 2 cut(s) 177, 656
NsiI ATGCAT 1 cut(s) 609
NspI RCATGY 1 cut(s) 67
PaeI GCATGC 1 cut(s) 67
PagI TCATGA 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 1 cut(s) 889
PdmI GAANNNNTTC 1 cut(s) 952
PfeI GAWTC 2 cut(s) 7, 322
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 6 cut(s) 107, 133, 286, 289, 462, 828
Ple19I CGATCG 1 cut(s) 861
PleI GAGTC 5 cut(s) 48, 305, 344, 663, 989
PluTI GGCGCC 2 cut(s) 132, 441
PmaCI CACGTG 1 cut(s) 402
PmlI CACGTG 1 cut(s) 402
PpsI GAGTC 5 cut(s) 48, 305, 344, 663, 989
Ppu21I YACGTR 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 279
PspCI CACGTG 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 3 cut(s) 130, 361, 439
PstI CTGCAG 1 cut(s) 462
PstNI CAGNNNCTG 1 cut(s) 466
PsyI GACNNNGTC 1 cut(s) 275
PvuI CGATCG 1 cut(s) 861
RsaI GTAC 3 cut(s) 599, 939, 988
RsaNI GTAC 3 cut(s) 598, 938, 987
RseI CAYNNNNRTG 1 cut(s) 663
SatI GCNGC 6 cut(s) 106, 132, 285, 288, 461, 827
Sau3AI GATC 8 cut(s) 27, 99, 192, 421, 615, 846, 858, 919
SchI GAGTC 5 cut(s) 48, 306, 345, 664, 989
ScrFI CCNGG 4 cut(s) 137, 281, 357, 962
SduI GDGCHC 1 cut(s) 524
SfcI CTRYAG 2 cut(s) 458, 798
SfoI GGCGCC 2 cut(s) 130, 439
SmiMI CAYNNNNRTG 1 cut(s) 663
SmlI CTYRAG 3 cut(s) 173, 326, 410
SmoI CTYRAG 3 cut(s) 173, 326, 410
SphI GCATGC 1 cut(s) 67
Sse9I AATT 2 cut(s) 879, 1000
SsiI CCGC 9 cut(s) 103, 106, 132, 285, 288, 309, 634, 731, 855
SspDI GGCGCC 2 cut(s) 128, 437
SspMI CTAG 1 cut(s) 594
StyD4I CCNGG 4 cut(s) 135, 279, 355, 960
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 4 cut(s) 88, 121, 382, 802
TaiI ACGT 3 cut(s) 261, 404, 690
TaqI TCGA 5 cut(s) 184, 255, 342, 861, 993
TasI AATT 2 cut(s) 879, 1000
TatI WGTACW 1 cut(s) 986
TauI GCSGC 4 cut(s) 108, 134, 287, 290
TfiI GAWTC 2 cut(s) 7, 322
TscAI CASTG 2 cut(s) 91, 118
TseFI GTSAC 2 cut(s) 177, 656
TseI GCWGC 2 cut(s) 460, 826
Tsp45I GTSAC 2 cut(s) 177, 656
TspDTI ATGAA 6 cut(s) 464, 494, 696, 734, 831, 926
TspRI CASTG 2 cut(s) 91, 118
Tth111I GACNNNGTC 1 cut(s) 275
VneI GTGCAC 1 cut(s) 520
XceI RCATGY 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 797
XmnI GAANNNNTTC 1 cut(s) 952
XspI CTAG 1 cut(s) 594
ZraI GACGTC 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.