Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000367.1

Orthogroup ID

OG0010443

Physical Location & Seq

Genomic Coordinates Forward (+)

39448 .. 43567

Gene Structure 4120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000367.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4005 bp

atgctcaataccgaagtcggcactgttcttgccgtgatccgccgccccagtgaaacagtctttggcgccgccccggacgacagcattgacccttctcttctccaatccctcaagtcacttcgagccttgatcttcaacccccaacaagaatggcgcaccatagacccttccatttacctctccccattcctcgacgtcatccaaagcgacttcgtccaggccgccgccaccagagtcgccctctccgccaccttgaagattctcaagctcggagtcttcgacgagaagacccccggagccaaggacgccatcaacaccgtcgtcaatgccatcaccacctgtaggcttgagaagactgatccggtgtcggagggcgccgtgatgatgaacattctgcagcttctgaccggagttatgaaccacagggcttcaatgttgttgtcagaccaagctgtgtgcaccattgtcaacacttgctttcaagtggttcaacaatccacgaaccgaggggacttgcttcagagaaatgctaggtacaccatgcatgagttgatccacatcattttttcgcggttgcctgaggttgagatgagtcacgacgatgaggagactgacaatgaagacgttgatgatggtggtttggatttcggatatggaatgaggtgtgcggttgatatatttcatttcttgtgttctttgctcaatgtggttgaggttgtggaggcagaggggtctacagttcaaactgctgatgaagatgtgcagctttttgctttgattttgatcaacaccgcgatcgagttgagtggagatggaattgggacgcattccaagcttttgaggatgatgaaagatgatctgtttcaccatttggtacactatggaacttgttcaagcccggttgtgttctccatgatttgcagtacggttttgaacatgtacattcgactccaattagaatccttctttgcatctgtgctgtttagagtcgcaggagctccaggagcaacaacccaacttcaagaagttgcactggaaggaattataaacttctgcaggcaaccgacattcatagtcgaagtttatgtgaactatgactgtgatcccttttgccataatgtattcgaggagattgggaagttgctttgcaagcagtcatttccggtgggtggccctttgtcaagtttacagatacaagcgtttgaagggttagtagtcatgatccacaacattgctgatagtattgataaagaaaatgatacaagcccttcagggccatatcctgttgaaattactgaatatacgccattttgggaagatgaggccaaagaggattcggaagcttgggtggagttcgtaagacttcgaaaagcacagaagaagaaaatattgattgctggacaccattataatcgagatgaaaagaagggaatggagtacttaaaacttaccaaattagtctctgatcctccggatccaaaggctctggctttcttcttccggtacactcctggtctagacaagatgctgataggggattatcttggtgatcctgacgagtttcatattgaagttctaagagaatatactgaaacctttggatttgcaggcatgaatcttgacagtggtttccgtacttttcttgagactttccgtttaccaggagagtcccagaagattgagcggattctcgaagtattttcagagaatttttatgaacaacaacctacagatatttttgcaaacaaggatacggtgctcattctttgctactctctcattatgctcaatactgatcaacacaatccacaagtgaagaagaaaatgacagaagacgagttcatcaggaacaatagagcaatcaatggaggaaaggatcttcctagagagtatctatctgagcttttccattccatctcacacaatgcattcaccacgtttggtttgcaggtagaaatgaacccaagcaaatggatcgagttgatgaaccgaacaaaaactgtgcaaccttactttctatgtgaatttgatcgccgtctaggaagagatatgtttgcttgcattgctggtccatctgtggcggctctttctgcagtatttgagcatgctgaagaagaggaattgctccatgaatgcattgaagggatgttctcggtggccagggtagctcagtatggactagaagacactcttgatgaacttatcgccacattctccaaattcactacattgttgaatccttatgcctctgcagaagaaaccctctttgcttttagcaaagatttgaagccaagaatggctacacttgctgttttcaccattgcaaacaattttggagagtcaattagagggggctggaggaacattgttgaatgcttgttgaaacttaagaggctaaagctgcttccacagtctgccattgaatttgatgctgcttccacctcatcggagaacttaaaatctgaatccggtataatcttcccagctcatgatcccaggtttggaggccgcccagctggcatgattaatcggttctcacattttatgtcactagagagtgcagaagatgctgtatcccttggcattagtgaatttgaacaaaatctcaaggttatcaaacaatgccgaattgggaacatcttcagcaatacttcaaactttcctgaagttgctttgctcaatcttgggcgttctttgatatatgcagctgctgggaaagggcaaaagtttagtacagcaattgaagaagaagaaactgttggtttctcctgggatataatagttgcaatcactttggccaacaatcataggttccagacattttggcctcattttcatgattatctgattgtggttgctcagtttcccatgttctcccctattccatttgctgaaaaggccattgtagggctcttcaagatatgtctgacgatccttgagactcaccgagctgacaaaatccccgaggaactcattttcaagtcaataaatctaatgtggaagctggaaaaagagattctagacacttgctgtgacttcataactcaatcactaaacaggattctgattgagtatcctgccaatttgcagacccaactcggttggaagtcagttctccacttattatcagtctctgggagacaccccgaatgctatgaactaggagttgagacacttatctctttgatgtctgatggaactcatgtttcgcggacaaattatgcttactgcattgattgtgcctttggttttattgcccttaagaacagtccattggagaagaacataaagatactggacctgttagcagagtctgtaaacttcttgatccagtggtatagaaaccactactcagatcctgggaacagctacagcaactcctctttagaggatgcaaaaggttttggctcttcctgcagctttgccatgaatttgtttgtcaaactaggagaggcatttagaaagtccagcttagctcggcgagaagagatgagaaaccatgcaattctatgtcttcaaaagagtttcaaacttgctgaggaattggacttcactccaaccaattgcatcaactgtttcaaccttgttgttttcgcaatggttgatgatctacatgaaaaaatgttggagtactcgcgtagggaaaacgcggagaaggagatgagaggcatggaagggaccttaaaggttgcattgaagctcttgacagaagtgtacctgcaattcttgaaacagatatcacagagtcccgggtttcgaacattttggttaggcgtgttgagaagaatggacacttgtatgaaggctgatttaggtggatatggtgaatcaacaacactgcaagaactagtcccggatttgttgagacagatgattacagagatgaaggaaaaagagattctagtgcaaaaggaagatgatgacctttgggagataacacatattcagatacagtggatagctcctgcaatcaaggaggagctttttccagaagaaaacttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0009846 GO:0009856 GO:0012505 GO:0016020 GO:0016192 GO:0019899 GO:0022414 GO:0031984 GO:0032501 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0051020 GO:0051179 GO:0051234 GO:0051704 GO:0065007 GO:0065009 GO:0090406 GO:0098772 GO:0098791 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

DCB Sec7 Sec7_N

Protein Analysis

1334

Amino Acids

150.97

Weight (kDa)

5.03

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19610
fragaria_vesca	FvH4_1g05140
malus_domestica	MD02G1050300.v1.1 MD15G1187600.v1.1
prunus_persica	Prupe.7G228800_v2.0.a1
pyrus_communis	pycom02g04190 pycom02g04200 pycom15g16840
rosa_chinensis	RchiOBHm_Chr2g0090771 RchiOBHm_Chr2g0090781
rosa_laevigata	RLG00000016142
rosa_multiflora	Rmu_co8351113.1_g000001 Rmu_ssc0000367.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150830
rosa_rugosa	Rorug02G0010400
rosa_samantha	Rh2AG056400 Rh2BG055100 Rh2CG057500 Rh2DG056000 Rh2DG056100
rosa_wichuraiana	Rw2G004610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1046, 1410
AatII	GACGTC	1 cut(s)	198
Acc36I	ACCTGC	2 cut(s)	1939, 3726
AccB1I	GGYRCC	2 cut(s)	65, 374
AccBSI	CCGCTC	1 cut(s)	1684
AccI	GTMKAC	1 cut(s)	734
AccII	CGCG	5 cut(s)	571, 794, 3211, 3637, 3650
AccIII	TCCGGA	1 cut(s)	1471
AcoI	YGGCCR	2 cut(s)	2157, 2796
AcsI	RAATTY	6 cut(s)	1708, 2024, 2219, 2423, 2591, 3430
AcuI	CTGAAG	5 cut(s)	503, 1254, 2130, 2626, 2685
AcyI	GRCGYC	4 cut(s)	66, 195, 306, 375
AfiI	CCNNNNNNNGG	4 cut(s)	342, 1169, 2501, 2907
AflII	CTTAAG	2 cut(s)	2387, 3260
AflIII	ACRYGT	1 cut(s)	936
AhlI	ACTAGT	1 cut(s)	3847
AjnI	CCWGG	8 cut(s)	216, 1000, 1510, 1660, 2159, 2495, 2768, 3358
AjuI	GAANNNNNNNTTGG	6 cut(s)	45, 77, 2742, 2774, 3257, 3289
Alw21I	GWGCWC	3 cut(s)	461, 1000, 1761
Alw26I	GTCTC	8 cut(s)	602, 1465, 1640, 2933, 3133, 3136, 3164, 3859
Alw44I	GTGCAC	1 cut(s)	457
AlwNI	CAGNNNCTG	5 cut(s)	403, 2711, 3134, 3314, 3359
Ama87I	CYCGRG	2 cut(s)	2963, 3749
Aor13HI	TCCGGA	1 cut(s)	1471
AoxI	GGCC	9 cut(s)	219, 1171, 1274, 1323, 2157, 2506, 2796, 2825, 2898
ApaLI	GTGCAC	1 cut(s)	457
ApeKI	GCWGC	7 cut(s)	397, 763, 2401, 2432, 2705, 2708, 3417
ApoI	RAATTY	6 cut(s)	1708, 2024, 2219, 2423, 2591, 3430
AseI	ATTAAT	1 cut(s)	2526
Asp700I	GAANNNNTTC	2 cut(s)	889, 2639
AspLEI	GCGC	3 cut(s)	68, 156, 377
AspS9I	GGNCC	5 cut(s)	1172, 1274, 2069, 3298, 3678
AsuC2I	CCSGG	6 cut(s)	74, 294, 899, 3750, 3751, 3854
AsuHPI	GGTGA	7 cut(s)	325, 857, 1559, 1924, 2308, 2936, 3836
AsuII	TTCGAA	2 cut(s)	1366, 3757
AvaI	CYCGRG	2 cut(s)	2963, 3749
AvaII	GGWCC	3 cut(s)	2069, 3298, 3678
AxyI	CCTNAGG	1 cut(s)	579
BaeGI	GKGCMC	1 cut(s)	461
BaeI	ACNNNNGTAYC	2 cut(s)	1184, 1217
BalI	TGGCCA	2 cut(s)	2159, 2798
BamHI	GGATCC	1 cut(s)	1474
BanI	GGYRCC	2 cut(s)	65, 374
BanII	GRGCYC	2 cut(s)	1000, 2913
BbsI	GAAGAC	7 cut(s)	268, 293, 359, 627, 1839, 2190, 3506
Bbv12I	GWGCWC	3 cut(s)	461, 1000, 1761
BbvCI	CCTCAGC	1 cut(s)	3537
BbvI	GCAGC	7 cut(s)	409, 775, 2388, 2419, 2695, 2717, 3429
BccI	CCATC	7 cut(s)	317, 338, 626, 806, 1922, 2080, 3188
BceAI	ACGGC	3 cut(s)	17, 362, 2019
BcgI	CGANNNNNNTGC	2 cut(s)	1957, 1991
BciT130I	CCWGG	8 cut(s)	218, 1002, 1512, 1662, 2161, 2497, 2770, 3360
BciVI	GTATCC	3 cut(s)	1744, 2584, 3084
BclI	TGATCA	2 cut(s)	783, 1795
BcnI	CCSGG	6 cut(s)	74, 294, 899, 3750, 3751, 3854
BcoDI	GTCTC	8 cut(s)	602, 1465, 1640, 2933, 3133, 3136, 3164, 3859
BcuI	ACTAGT	1 cut(s)	3847
BfmI	CTRYAG	9 cut(s)	340, 395, 735, 1054, 1728, 2091, 2250, 3370, 3415
BfoI	RGCGCY	2 cut(s)	69, 378
BfrI	CTTAAG	2 cut(s)	2387, 3260
BfuAI	ACCTGC	2 cut(s)	1939, 3726
BfuI	GTATCC	3 cut(s)	1744, 2584, 3084
BglI	GCCNNNNNGGC	1 cut(s)	2517
BlpI	GCTNAGC	1 cut(s)	3472
BmcAI	AGTACT	2 cut(s)	1439, 3632
Bme18I	GGWCC	3 cut(s)	2069, 3298, 3678
BmeT110I	CYCGRG	2 cut(s)	2963, 3749
BmgT120I	GGNCC	5 cut(s)	1172, 1274, 2069, 3298, 3678
BmiI	GGNNCC	6 cut(s)	67, 298, 376, 1476, 2813, 3679
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	6 cut(s)	980, 1515, 2419, 2557, 3382, 3576
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	7 cut(s)	268, 293, 359, 627, 1839, 2190, 3506
BplI	GAGNNNNNCTC	2 cut(s)	225, 257
BpmI	CTGGAG	2 cut(s)	984, 2377
Bpu10I	CCTNAGC	1 cut(s)	3537
Bpu1102I	GCTNAGC	1 cut(s)	3472
Bpu14I	TTCGAA	2 cut(s)	1366, 3757
BpuEI	CTTGAG	6 cut(s)	95, 248, 368, 1664, 2591, 2957
BpuMI	CCSGG	6 cut(s)	74, 294, 899, 3750, 3751, 3854
BsaBI	GATNNNNATC	2 cut(s)	557, 782
BsaHI	GRCGYC	4 cut(s)	66, 195, 306, 375
BsaWI	WCCGGW	6 cut(s)	361, 407, 1162, 1471, 1500, 2468
BsaXI	ACNNNNNCTCC	2 cut(s)	3362, 3392
Bsc4I	CCNNNNNNNGG	4 cut(s)	342, 1169, 2501, 2907
Bse1I	ACTGG	4 cut(s)	48, 1038, 3300, 3331
Bse21I	CCTNAGG	1 cut(s)	579
Bse3DI	GCAATG	4 cut(s)	1230, 2061, 2319, 3603
Bse8I	GATNNNNATC	2 cut(s)	557, 782
BseAI	TCCGGA	1 cut(s)	1471
BseBI	CCWGG	8 cut(s)	218, 1002, 1512, 1662, 2161, 2497, 2770, 3360
BseGI	GGATG	4 cut(s)	198, 849, 2151, 3397
BseJI	GATNNNNATC	2 cut(s)	557, 782
BseLI	CCNNNNNNNGG	4 cut(s)	342, 1169, 2501, 2907
BseMI	GCAATG	4 cut(s)	1230, 2061, 2319, 3603
BseMII	CTCAG	6 cut(s)	570, 1890, 2183, 2873, 3366, 3528
BseNI	ACTGG	4 cut(s)	48, 1038, 3300, 3331
BseRI	GAGGAG	4 cut(s)	620, 1142, 3370, 3992
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	7 cut(s)	409, 775, 2388, 2419, 2695, 2717, 3429
BseYI	CCCAGC	3 cut(s)	2482, 2512, 2711
BsgI	GTGCAG	2 cut(s)	782, 2580
Bsh1236I	CGCG	5 cut(s)	571, 794, 3211, 3637, 3650
Bsh1285I	CGRYCG	1 cut(s)	798
BshFI	GGCC	9 cut(s)	221, 1173, 1276, 1325, 2159, 2508, 2798, 2827, 2900
BshNI	GGYRCC	2 cut(s)	65, 374
BsiEI	CGRYCG	1 cut(s)	798
BsiHKAI	GWGCWC	3 cut(s)	461, 1000, 1761
BsiHKCI	CYCGRG	2 cut(s)	2963, 3749
BslFI	GGGAC	6 cut(s)	524, 835, 1654, 3691, 3732, 3836
BslI	CCNNNNNNNGG	4 cut(s)	342, 1169, 2501, 2907
BsmAI	GTCTC	8 cut(s)	602, 1465, 1640, 2933, 3133, 3136, 3164, 3859
BsmFI	GGGAC	6 cut(s)	524, 835, 1654, 3691, 3732, 3836
BsmI	GAATGC	5 cut(s)	826, 1928, 2138, 2378, 3155
BsnI	GGCC	9 cut(s)	221, 1173, 1276, 1325, 2159, 2508, 2798, 2827, 2900
BsoBI	CYCGRG	2 cut(s)	2963, 3749
Bsp119I	TTCGAA	2 cut(s)	1366, 3757
Bsp1286I	GDGCHC	4 cut(s)	461, 1000, 1761, 2913
Bsp13I	TCCGGA	1 cut(s)	1471
Bsp1407I	TGTACA	1 cut(s)	939
Bsp1720I	GCTNAGC	1 cut(s)	3472
BspANI	GGCC	9 cut(s)	221, 1173, 1276, 1325, 2159, 2508, 2798, 2827, 2900
BspCNI	CTCAG	6 cut(s)	571, 1891, 2182, 2872, 3365, 3529
BspEI	TCCGGA	1 cut(s)	1471
BspFNI	CGCG	5 cut(s)	571, 794, 3211, 3637, 3650
BspHI	TCATGA	3 cut(s)	1218, 2488, 2836
BspLI	GGNNCC	6 cut(s)	67, 298, 376, 1476, 2813, 3679
BspMAI	CTGCAG	5 cut(s)	399, 1058, 2095, 2254, 3419
BspMI	ACCTGC	2 cut(s)	1939, 3726
BspQI	GCTCTTC	2 cut(s)	2918, 3415
BspT104I	TTCGAA	2 cut(s)	1366, 3757
BspT107I	GGYRCC	2 cut(s)	65, 374
BspTI	CTTAAG	2 cut(s)	2387, 3260
BsrBI	CCGCTC	1 cut(s)	1684
BsrDI	GCAATG	4 cut(s)	1230, 2061, 2319, 3603
BsrGI	TGTACA	1 cut(s)	939
BsrI	ACTGG	4 cut(s)	48, 1038, 3300, 3331
BssNI	GRCGYC	4 cut(s)	66, 195, 306, 375
BssT1I	CCWWGG	2 cut(s)	300, 2578
Bst2UI	CCWGG	8 cut(s)	218, 1002, 1512, 1662, 2161, 2497, 2770, 3360
Bst6I	CTCTTC	6 cut(s)	102, 2038, 2109, 2918, 3415, 3480
BstACI	GRCGYC	4 cut(s)	66, 195, 306, 375
BstAFI	CTTAAG	2 cut(s)	2387, 3260
BstAPI	GCANNNNNTGC	1 cut(s)	2567
BstAUI	TGTACA	1 cut(s)	939
BstBI	TTCGAA	2 cut(s)	1366, 3757
BstC8I	GCNNGC	6 cut(s)	1058, 1151, 1609, 2059, 2106, 2518
BstDEI	CTNAG	8 cut(s)	579, 1577, 1899, 2169, 2859, 3352, 3472, 3537
BstF5I	GGATG	4 cut(s)	198, 849, 2151, 3397
BstFNI	CGCG	5 cut(s)	571, 794, 3211, 3637, 3650
BstH2I	RGCGCY	2 cut(s)	69, 378
BstHHI	GCGC	3 cut(s)	68, 156, 377
BstMAI	GTCTC	8 cut(s)	602, 1465, 1640, 2933, 3133, 3136, 3164, 3859
BstMCI	CGRYCG	1 cut(s)	798
BstNI	CCWGG	8 cut(s)	218, 1002, 1512, 1662, 2161, 2497, 2770, 3360
BstNSI	RCATGY	2 cut(s)	940, 2108
BstSFI	CTRYAG	9 cut(s)	340, 395, 735, 1054, 1728, 2091, 2250, 3370, 3415
BstSLI	GKGCMC	1 cut(s)	461
BstUI	CGCG	5 cut(s)	571, 794, 3211, 3637, 3650
BstV1I	GCAGC	7 cut(s)	409, 775, 2388, 2419, 2695, 2717, 3429
BstV2I	GAAGAC	7 cut(s)	268, 293, 359, 627, 1839, 2190, 3506
BstX2I	RGATCY	3 cut(s)	1474, 1876, 3355
BstXI	CCANNNNNNTGG	1 cut(s)	1971
BstYI	RGATCY	3 cut(s)	1474, 1876, 3355
Bsu36I	CCTNAGG	1 cut(s)	579
BsuI	GTATCC	3 cut(s)	1744, 2584, 3084
BsuRI	GGCC	9 cut(s)	221, 1173, 1276, 1325, 2159, 2508, 2798, 2827, 2900
BtsCI	GGATG	4 cut(s)	198, 849, 2151, 3397
BtsI	GCAGTG	1 cut(s)	3836
BtsIMutI	CAGTG	7 cut(s)	21, 55, 1031, 1630, 3338, 3836, 3959
BveI	ACCTGC	2 cut(s)	1939, 3726
Cac8I	GCNNGC	6 cut(s)	1058, 1151, 1609, 2059, 2106, 2518
CaiI	CAGNNNCTG	5 cut(s)	403, 2711, 3134, 3314, 3359
CciI	TCATGA	3 cut(s)	1218, 2488, 2836
CfoI	GCGC	3 cut(s)	68, 156, 377
Cfr13I	GGNCC	5 cut(s)	1172, 1274, 2069, 3298, 3678
Cfr9I	CCCGGG	1 cut(s)	3749
CseI	GACGC	2 cut(s)	314, 832
DdeI	CTNAG	8 cut(s)	579, 1577, 1899, 2169, 2859, 3352, 3472, 3537
DinI	GGCGCC	2 cut(s)	67, 376
EaeI	YGGCCR	2 cut(s)	2157, 2796
Eam1104I	CTCTTC	6 cut(s)	102, 2038, 2109, 2918, 3415, 3480
EarI	CTCTTC	6 cut(s)	102, 2038, 2109, 2918, 3415, 3480
EciI	GGCGGA	2 cut(s)	29, 235
Ecl136II	GAGCTC	1 cut(s)	998
Eco130I	CCWWGG	2 cut(s)	300, 2578
Eco24I	GRGCYC	2 cut(s)	1000, 2913
Eco32I	GATATC	1 cut(s)	3738
Eco47I	GGWCC	3 cut(s)	2069, 3298, 3678
Eco53kI	GAGCTC	1 cut(s)	998
Eco57I	CTGAAG	5 cut(s)	503, 1254, 2130, 2626, 2685
Eco81I	CCTNAGG	1 cut(s)	579
Eco88I	CYCGRG	2 cut(s)	2963, 3749
EcoICRI	GAGCTC	1 cut(s)	998
EcoO109I	RGGNCCY	1 cut(s)	3678
EcoRII	CCWGG	8 cut(s)	216, 1000, 1510, 1660, 2159, 2495, 2768, 3358
EcoRV	GATATC	1 cut(s)	3738
EcoT14I	CCWWGG	2 cut(s)	300, 2578
EcoT22I	ATGCAT	3 cut(s)	546, 1930, 2138
EcoT38I	GRGCYC	2 cut(s)	1000, 2913
EgeI	GGCGCC	2 cut(s)	67, 376
EheI	GGCGCC	2 cut(s)	67, 376
ErhI	CCWWGG	2 cut(s)	300, 2578
FalI	AAGNNNNNCTT	4 cut(s)	2175, 2207, 3455, 3487
FaqI	GGGAC	6 cut(s)	524, 835, 1654, 3691, 3732, 3836
FbaI	TGATCA	2 cut(s)	783, 1795
FblI	GTMKAC	1 cut(s)	734
FokI	GGATG	4 cut(s)	185, 856, 2158, 3404
FriOI	GRGCYC	2 cut(s)	1000, 2913
GlaI	GCGC	3 cut(s)	67, 155, 376
GsaI	CCCAGC	3 cut(s)	2486, 2516, 2715
GsuI	CTGGAG	2 cut(s)	984, 2377
HaeII	RGCGCY	2 cut(s)	69, 378
HaeIII	GGCC	9 cut(s)	221, 1173, 1276, 1325, 2159, 2508, 2798, 2827, 2900
HgaI	GACGC	2 cut(s)	314, 832
HhaI	GCGC	3 cut(s)	68, 156, 377
Hin1I	GRCGYC	4 cut(s)	66, 195, 306, 375
Hin6I	GCGC	3 cut(s)	66, 154, 375
HinP1I	GCGC	3 cut(s)	66, 154, 375
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HindIII	AAGCTT	2 cut(s)	833, 1341
HphI	GGTGA	7 cut(s)	325, 857, 1559, 1924, 2308, 2936, 3836
Hpy99I	CGWCG	4 cut(s)	197, 284, 323, 602
HpyCH4IV	ACGT	3 cut(s)	195, 624, 1937
HpyF3I	CTNAG	8 cut(s)	579, 1577, 1899, 2169, 2859, 3352, 3472, 3537
HpySE526I	ACGT	3 cut(s)	195, 624, 1937
Hsp92I	GRCGYC	4 cut(s)	66, 195, 306, 375
HspAI	GCGC	3 cut(s)	66, 154, 375
KasI	GGCGCC	2 cut(s)	65, 374
Kpn2I	TCCGGA	1 cut(s)	1471
Ksp22I	TGATCA	2 cut(s)	783, 1795
LguI	GCTCTTC	2 cut(s)	2918, 3415
LmnI	GCTCC	7 cut(s)	296, 995, 1003, 1004, 2130, 3967, 3979
Lsp1109I	GCAGC	7 cut(s)	409, 775, 2388, 2419, 2695, 2717, 3429
LweI	GCATC	6 cut(s)	980, 1515, 2419, 2557, 3382, 3576
MaeII	ACGT	3 cut(s)	195, 624, 1937
MaeIII	GTNAC	4 cut(s)	114, 593, 2547, 3032
MbiI	CCGCTC	1 cut(s)	1684
MfeI	CAATTG	2 cut(s)	2739, 3562
MflI	RGATCY	3 cut(s)	1474, 1876, 3355
MhlI	GDGCHC	4 cut(s)	461, 1000, 1761, 2913
MlsI	TGGCCA	2 cut(s)	2159, 2798
MluNI	TGGCCA	2 cut(s)	2159, 2798
Mly113I	GGCGCC	2 cut(s)	66, 375
MmeI	TCCRAC	4 cut(s)	348, 3083, 3581, 3606
Mox20I	TGGCCA	2 cut(s)	2159, 2798
Mph1103I	ATGCAT	3 cut(s)	546, 1930, 2138
MroI	TCCGGA	1 cut(s)	1471
MroXI	GAANNNNTTC	2 cut(s)	889, 2639
MscI	TGGCCA	2 cut(s)	2159, 2798
MseI	TTAA	6 cut(s)	1442, 2388, 2456, 2526, 3261, 3683
MslI	CAYNNNNRTG	3 cut(s)	600, 2835, 3797
Msp20I	TGGCCA	2 cut(s)	2159, 2798
MspA1I	CMGCKG	2 cut(s)	2516, 2708
MspCI	CTTAAG	2 cut(s)	2387, 3260
MunI	CAATTG	2 cut(s)	2739, 3562
Mva1269I	GAATGC	5 cut(s)	826, 1928, 2138, 2378, 3155
MvaI	CCWGG	8 cut(s)	218, 1002, 1512, 1662, 2161, 2497, 2770, 3360
MvnI	CGCG	5 cut(s)	571, 794, 3211, 3637, 3650
NarI	GGCGCC	2 cut(s)	66, 375
NciI	CCSGG	6 cut(s)	74, 294, 899, 3750, 3751, 3854
NlaIV	GGNNCC	6 cut(s)	67, 298, 376, 1476, 2813, 3679
NmeAIII	GCCGAG	1 cut(s)	3457
NmuCI	GTSAC	4 cut(s)	114, 593, 2547, 3032
NsiI	ATGCAT	3 cut(s)	546, 1930, 2138
NspI	RCATGY	2 cut(s)	940, 2108
NspV	TTCGAA	2 cut(s)	1366, 3757
PaeI	GCATGC	1 cut(s)	2108
PagI	TCATGA	3 cut(s)	1218, 2488, 2836
PciI	ACATGT	1 cut(s)	936
PciSI	GCTCTTC	2 cut(s)	2918, 3415
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	5 cut(s)	826, 1928, 2138, 2378, 3155
PdmI	GAANNNNTTC	2 cut(s)	889, 2639
PflFI	GACNNNGTC	1 cut(s)	212
PfoI	TCCNGGA	2 cut(s)	1000, 3852
Ple19I	CGATCG	1 cut(s)	798
PluTI	GGCGCC	2 cut(s)	69, 378
PpuMI	RGGWCCY	1 cut(s)	3678
PscI	ACATGT	1 cut(s)	936
PshBI	ATTAAT	1 cut(s)	2526
PsiI	TTATAA	2 cut(s)	1046, 1410
Psp124BI	GAGCTC	1 cut(s)	1000
Psp5II	RGGWCCY	1 cut(s)	3678
Psp6I	CCWGG	8 cut(s)	216, 1000, 1510, 1660, 2159, 2495, 2768, 3358
PspFI	CCCAGC	3 cut(s)	2482, 2512, 2711
PspGI	CCWGG	8 cut(s)	216, 1000, 1510, 1660, 2159, 2495, 2768, 3358
PspN4I	GGNNCC	6 cut(s)	67, 298, 376, 1476, 2813, 3679
PspPI	GGNCC	5 cut(s)	1172, 1274, 2069, 3298, 3678
PspPPI	RGGWCCY	1 cut(s)	3678
PstI	CTGCAG	5 cut(s)	399, 1058, 2095, 2254, 3419
PstNI	CAGNNNCTG	5 cut(s)	403, 2711, 3134, 3314, 3359
PsuI	RGATCY	3 cut(s)	1474, 1876, 3355
PsyI	GACNNNGTC	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	798
PvuII	CAGCTG	2 cut(s)	2516, 2708
RseI	CAYNNNNRTG	3 cut(s)	600, 2835, 3797
SacI	GAGCTC	1 cut(s)	1000
SapI	GCTCTTC	2 cut(s)	2918, 3415
SaqAI	TTAA	6 cut(s)	1442, 2388, 2456, 2526, 3261, 3683
Sau96I	GGNCC	5 cut(s)	1172, 1274, 2069, 3298, 3678
ScaI	AGTACT	2 cut(s)	1439, 3632
SduI	GDGCHC	4 cut(s)	461, 1000, 1761, 2913
SfaNI	GCATC	6 cut(s)	980, 1515, 2419, 2557, 3382, 3576
SfcI	CTRYAG	9 cut(s)	340, 395, 735, 1054, 1728, 2091, 2250, 3370, 3415
SfoI	GGCGCC	2 cut(s)	67, 376
SfuI	TTCGAA	2 cut(s)	1366, 3757
SinI	GGWCC	3 cut(s)	2069, 3298, 3678
SmaI	CCCGGG	1 cut(s)	3751
SmiMI	CAYNNNNRTG	3 cut(s)	600, 2835, 3797
SmlI	CTYRAG	8 cut(s)	110, 263, 347, 1643, 2387, 2606, 2936, 3260
SmoI	CTYRAG	8 cut(s)	110, 263, 347, 1643, 2387, 2606, 2936, 3260
SpeI	ACTAGT	1 cut(s)	3847
SphI	GCATGC	1 cut(s)	2108
SspDI	GGCGCC	2 cut(s)	65, 374
SspI	AATATT	1 cut(s)	1389
SstI	GAGCTC	1 cut(s)	1000
StyI	CCWWGG	2 cut(s)	300, 2578
TaiI	ACGT	3 cut(s)	198, 627, 1940
TatI	WGTACW	4 cut(s)	939, 1437, 2732, 3630
TauI	GCSGC	6 cut(s)	45, 71, 224, 227, 2084, 2511
Tru1I	TTAA	6 cut(s)	1442, 2388, 2456, 2526, 3261, 3683
Tru9I	TTAA	6 cut(s)	1442, 2388, 2456, 2526, 3261, 3683
TscAI	CASTG	7 cut(s)	28, 55, 1038, 1630, 3338, 3843, 3959
TseFI	GTSAC	4 cut(s)	114, 593, 2547, 3032
TseI	GCWGC	7 cut(s)	397, 763, 2401, 2432, 2705, 2708, 3417
Tsp45I	GTSAC	4 cut(s)	114, 593, 2547, 3032
TspGWI	ACGGA	2 cut(s)	1622, 1643
TspMI	CCCGGG	1 cut(s)	3749
TspRI	CASTG	7 cut(s)	28, 55, 1038, 1630, 3338, 3843, 3959
Tth111I	GACNNNGTC	1 cut(s)	212
Vha464I	CTTAAG	2 cut(s)	2387, 3260
VneI	GTGCAC	1 cut(s)	457
VpaK11BI	GGWCC	3 cut(s)	2069, 3298, 3678
VspI	ATTAAT	1 cut(s)	2526
XapI	RAATTY	6 cut(s)	1708, 2024, 2219, 2423, 2591, 3430
XbaI	TCTAGA	2 cut(s)	1516, 3019
XceI	RCATGY	2 cut(s)	940, 2108
XmaI	CCCGGG	1 cut(s)	3749
XmiI	GTMKAC	1 cut(s)	734
XmnI	GAANNNNTTC	2 cut(s)	889, 2639
ZraI	GACGTC	1 cut(s)	196
ZrmI	AGTACT	2 cut(s)	1439, 3632
Zsp2I	ATGCAT	3 cut(s)	546, 1930, 2138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.