RchiOBHm_Chr2g0090781

ARF guanine-nucleotide exchange factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
4502504 .. 4503999
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46602

Sequence Viewer

Length: 1485 bp
ATGATTAATCGGTTCTCACATTTTATGTCACTAGAGAGTGCAGAAGATGCTGTATCCCTTGGCATTAGTGAATTTGAACAAAATCTCAAGGTTATCAAACAATGCCGAATTGGGAATATCTTCAGCAATACTTCAAACTTTCCTGAAGTTGCTTTGCTCAATCTTGGGCGTTCTTTGATATATGCAGCTGCTGGGAAAGGGCAAAAGTTTAGTACAGCAATTGAAGAAGAAGAAACTGTTGGTTTCTCCTGGGATTTAATAGTTGCAATCACTTTGGCCAACAATCATAGGTTCCAGACATTTTGGCCTCATTTTCATGATTATCTGATTGTAGTTGCTCAGTTTCCCATGTTCTCCCCTATTCCATTTGCTGAAAAGGCCATTGTAGGGCTCTTCAAGATATGTCTCACGATCCTTGAGACTCACCGAGCTGACAAAATCCCCGAGGAACTCATTTTCAAGTCAATAAATCTAATGTGGAAGCTGGAAAAAGAGATTCTAGACACTTGCTGTCACTTCATAACTCAATCACTAAACAGGATTCTGATTGAGTACCCTGCCAATTTGCAGACCCAACTCGGTTGGAAGTCAGTTCTCCACTTATTATCAGTCTCTGGGAGACACCCCGAATGCTATGAACTAGGAGTTGAGACACTTATCTCGTTGATGTCTGATGGAACTCATGTTTCGCGGACAAATTATGCTTACTGCATTGATTGTGCCTTTGGTTTTATTGCCCTTAAGAACAGTCCATTGGAAAAGAACATAAAGATACTGGACCTGTTAGCAGAGTCTGTAAACTTCTTGATCCAGTGGTATAGAAACCACTACTCAGATCCTGGGAACAGCTACAGCAACTCCTCTTTAGAGGATGCAAAAGGTTTTGGCTCTTCCTGCAGCTTTGCCATGAATTTGTTTGTCAAACTAGGAGAGGCATTTAGAAAGTCCAGCTTAGCTCGGCGAGAAGAGATGAGAAACCATGCAATTCTATGTCTTCAAAAGAGTTTCAAACTTGCTGAGGAATTGGACTTCACTCCAATCAATTGCATCAACTGTTTCAACCTTGTTGTTTTCGCAATGGTTGATGATCTACATGAAAAAATGTTGGAGTACTCGCGTAGGGAAAACGCGGAGAAGGAGATGAGAGGCATGGAAGGGACCTTAAAGGTTGCATTGAAGCTCTTGACAGAAGTGTACCTGCAATTCTTGAAACAGATATCACAGAGTCCCGGGTTTCGAACATTTTGGTTAGGAGTGTTGAGAAGAATGGACACTTGTATGAAGGCTGATTTAGGTGGATATGGTGAATCAACAACACTGCAAGAACTAGTCCCGGATTTGTTGAGACAGATGATTACAGTGATGAAGGAAAAAGAGATGCTAGTGCAAAAGGAAGATGATGACCTTTGGGAGATAACACATATTCAGATACAGTGGATAGCTCCTGCAATCAAGGAGGAGCTTTTTCCAGAAGAAAACTTATGA

Protein Analysis

494

Amino Acids

56.64

Weight (kDa)

5.5

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_28 PF23325 316 - 475 7.3e-07 GBF1-like, tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1206
AccII CGCG 3 cut(s) 691, 1117, 1130
AciI CCGC 2 cut(s) 691, 1130
AclWI GGATC 3 cut(s) 406, 802, 830
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 2 cut(s) 71, 910
AcuI CTGAAG 2 cut(s) 106, 165
AfaI GTAC 4 cut(s) 214, 554, 1112, 1196
AfiI CCNNNNNNNGG 1 cut(s) 387
AflII CTTAAG 1 cut(s) 740
AhlI ACTAGT 1 cut(s) 1327
AjnI CCWGG 2 cut(s) 248, 838
AjuI GAANNNNNNNTTGG 4 cut(s) 222, 254, 737, 769
Alw26I GTCTC 6 cut(s) 410, 413, 613, 616, 644, 1339
AlwI GGATC 3 cut(s) 406, 802, 830
AlwNI CAGNNNCTG 4 cut(s) 191, 614, 794, 839
Ama87I CYCGRG 2 cut(s) 443, 1229
AoxI GGCC 3 cut(s) 276, 305, 378
ApeKI GCWGC 3 cut(s) 185, 188, 897
ApoI RAATTY 2 cut(s) 71, 910
AseI ATTAAT 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 778, 1158
AsuC2I CCSGG 3 cut(s) 1230, 1231, 1334
AsuHPI GGTGA 2 cut(s) 416, 1316
AsuII TTCGAA 1 cut(s) 1237
AvaI CYCGRG 2 cut(s) 443, 1229
AvaII GGWCC 2 cut(s) 778, 1158
BalI TGGCCA 1 cut(s) 278
BanII GRGCYC 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 986
BbvCI CCTCAGC 1 cut(s) 1017
BbvI GCAGC 3 cut(s) 175, 197, 909
BccI CCATC 1 cut(s) 668
BciT130I CCWGG 2 cut(s) 250, 840
BciVI GTATCC 1 cut(s) 64
BcnI CCSGG 3 cut(s) 1230, 1231, 1334
BcoDI GTCTC 6 cut(s) 410, 413, 613, 616, 644, 1339
BcuI ACTAGT 1 cut(s) 1327
BfaI CTAG 6 cut(s) 32, 500, 641, 926, 1328, 1382
BfmI CTRYAG 2 cut(s) 850, 895
BfrI CTTAAG 1 cut(s) 740
BfuAI ACCTGC 1 cut(s) 1206
BfuI GTATCC 1 cut(s) 64
BisI GCNGC 3 cut(s) 186, 189, 898
BlpI GCTNAGC 1 cut(s) 952
BlsI GCNGC 3 cut(s) 187, 190, 899
BmcAI AGTACT 1 cut(s) 1112
Bme1390I CCNGG 5 cut(s) 250, 840, 1230, 1231, 1334
Bme18I GGWCC 2 cut(s) 778, 1158
BmeT110I CYCGRG 2 cut(s) 443, 1229
BmgT120I GGNCC 2 cut(s) 778, 1158
BmiI GGNNCC 2 cut(s) 293, 1159
BmrFI CCNGG 5 cut(s) 250, 840, 1230, 1231, 1334
BmsI GCATC 4 cut(s) 37, 862, 1056, 1368
BpiI GAAGAC 1 cut(s) 986
Bpu10I CCTNAGC 1 cut(s) 1017
Bpu1102I GCTNAGC 1 cut(s) 952
Bpu14I TTCGAA 1 cut(s) 1237
BpuEI CTTGAG 2 cut(s) 71, 437
BpuMI CCSGG 3 cut(s) 1230, 1231, 1334
BsaJI CCNNGG 5 cut(s) 58, 249, 444, 839, 1229
BsaXI ACNNNNNCTCC 2 cut(s) 842, 872
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse1I ACTGG 2 cut(s) 780, 811
Bse3DI GCAATG 1 cut(s) 1083
BseBI CCWGG 2 cut(s) 250, 840
BseDI CCNNGG 5 cut(s) 58, 249, 444, 839, 1229
BseGI GGATG 1 cut(s) 877
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 1 cut(s) 1083
BseMII CTCAG 3 cut(s) 353, 846, 1008
BseNI ACTGG 2 cut(s) 780, 811
BseRI GAGGAG 2 cut(s) 850, 1472
BseXI GCAGC 3 cut(s) 175, 197, 909
BseYI CCCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 3 cut(s) 691, 1117, 1130
BshFI GGCC 3 cut(s) 278, 307, 380
BsiHKCI CYCGRG 2 cut(s) 443, 1229
BsiSI CCGG 2 cut(s) 1230, 1334
BslFI GGGAC 3 cut(s) 1171, 1212, 1316
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 6 cut(s) 410, 413, 613, 616, 644, 1339
BsmFI GGGAC 3 cut(s) 1171, 1212, 1316
BsmI GAATGC 1 cut(s) 635
BsnI GGCC 3 cut(s) 278, 307, 380
BsoBI CYCGRG 2 cut(s) 443, 1229
Bsp119I TTCGAA 1 cut(s) 1237
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 4 cut(s) 411, 807, 835, 1087
Bsp1720I GCTNAGC 1 cut(s) 952
BspACI CCGC 2 cut(s) 691, 1130
BspANI GGCC 3 cut(s) 278, 307, 380
BspCNI CTCAG 3 cut(s) 352, 845, 1009
BspFNI CGCG 3 cut(s) 691, 1117, 1130
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 293, 1159
BspMAI CTGCAG 1 cut(s) 899
BspMI ACCTGC 1 cut(s) 1206
BspPI GGATC 3 cut(s) 406, 802, 830
BspQI GCTCTTC 2 cut(s) 398, 895
BspT104I TTCGAA 1 cut(s) 1237
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 1 cut(s) 1083
BsrI ACTGG 2 cut(s) 780, 811
BssECI CCNNGG 5 cut(s) 58, 249, 444, 839, 1229
BssMI GATC 4 cut(s) 411, 807, 835, 1087
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 2 cut(s) 250, 840
Bst4CI ACNGT 5 cut(s) 238, 749, 1055, 1360, 1434
Bst6I CTCTTC 3 cut(s) 398, 895, 960
BstAFI CTTAAG 1 cut(s) 740
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 1237
BstDEI CTNAG 4 cut(s) 339, 832, 952, 1017
BstF5I GGATG 1 cut(s) 877
BstFNI CGCG 3 cut(s) 691, 1117, 1130
BstKTI GATC 4 cut(s) 414, 810, 838, 1090
BstMAI GTCTC 6 cut(s) 410, 413, 613, 616, 644, 1339
BstMBI GATC 4 cut(s) 411, 807, 835, 1087
BstMWI GCNNNNNNNGC 3 cut(s) 47, 377, 894
BstNI CCWGG 2 cut(s) 250, 840
BstSCI CCNGG 5 cut(s) 248, 838, 1228, 1229, 1332
BstSFI CTRYAG 2 cut(s) 850, 895
BstUI CGCG 3 cut(s) 691, 1117, 1130
BstV1I GCAGC 3 cut(s) 175, 197, 909
BstV2I GAAGAC 1 cut(s) 986
BstX2I RGATCY 1 cut(s) 835
BstYI RGATCY 1 cut(s) 835
BsuI GTATCC 1 cut(s) 64
BsuRI GGCC 3 cut(s) 278, 307, 380
BtsCI GGATG 1 cut(s) 877
BtsI GCAGTG 1 cut(s) 1316
BtsIMutI CAGTG 4 cut(s) 818, 1316, 1365, 1439
BveI ACCTGC 1 cut(s) 1206
CaiI CAGNNNCTG 4 cut(s) 191, 614, 794, 839
CciI TCATGA 1 cut(s) 316
Cfr13I GGNCC 2 cut(s) 778, 1158
Cfr9I CCCGGG 1 cut(s) 1229
Csp6I GTAC 4 cut(s) 213, 553, 1111, 1195
CviAII CATG 7 cut(s) 317, 349, 683, 907, 980, 1094, 1150
CviQI GTAC 4 cut(s) 213, 553, 1111, 1195
DdeI CTNAG 4 cut(s) 339, 832, 952, 1017
DpnI GATC 4 cut(s) 413, 809, 837, 1089
DpnII GATC 4 cut(s) 411, 807, 835, 1087
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 3 cut(s) 398, 895, 960
EarI CTCTTC 3 cut(s) 398, 895, 960
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 393
Eco32I GATATC 1 cut(s) 1218
Eco47I GGWCC 2 cut(s) 778, 1158
Eco57I CTGAAG 2 cut(s) 106, 165
Eco88I CYCGRG 2 cut(s) 443, 1229
EcoO109I RGGNCCY 1 cut(s) 1158
EcoRII CCWGG 2 cut(s) 248, 838
EcoRV GATATC 1 cut(s) 1218
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 7 cut(s) 320, 352, 686, 910, 983, 1097, 1153
FalI AAGNNNNNCTT 2 cut(s) 935, 967
FaqI GGGAC 3 cut(s) 1171, 1212, 1316
FatI CATG 7 cut(s) 316, 348, 682, 906, 979, 1093, 1149
Fnu4HI GCNGC 3 cut(s) 186, 189, 898
FokI GGATG 1 cut(s) 884
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 3 cut(s) 186, 189, 898
FspBI CTAG 6 cut(s) 32, 500, 641, 926, 1328, 1382
GluI GCNGC 3 cut(s) 186, 189, 898
GsaI CCCAGC 1 cut(s) 195
HaeIII GGCC 3 cut(s) 278, 307, 380
HapII CCGG 2 cut(s) 1230, 1334
Hin1II CATG 7 cut(s) 320, 352, 686, 910, 983, 1097, 1153
HinfI GANTC 6 cut(s) 421, 496, 541, 791, 1225, 1307
HpaII CCGG 2 cut(s) 1230, 1334
HphI GGTGA 2 cut(s) 416, 1316
Hpy166II GTNNAC 2 cut(s) 799, 1195
Hpy188I TCNGA 5 cut(s) 327, 546, 673, 835, 1428
Hpy8I GTNNAC 2 cut(s) 799, 1195
HpyAV CCTTC 4 cut(s) 1129, 1148, 1276, 1360
HpyCH4III ACNGT 5 cut(s) 238, 749, 1055, 1360, 1434
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 377, 894
HpyF3I CTNAG 4 cut(s) 339, 832, 952, 1017
Hsp92II CATG 7 cut(s) 320, 352, 686, 910, 983, 1097, 1153
Kzo9I GATC 4 cut(s) 411, 807, 835, 1087
LguI GCTCTTC 2 cut(s) 398, 895
LmnI GCTCC 2 cut(s) 1447, 1459
Lsp1109I GCAGC 3 cut(s) 175, 197, 909
LweI GCATC 4 cut(s) 37, 862, 1056, 1368
MaeI CTAG 6 cut(s) 32, 500, 641, 926, 1328, 1382
MaeIII GTNAC 2 cut(s) 27, 512
MalI GATC 4 cut(s) 413, 809, 837, 1089
MboI GATC 4 cut(s) 411, 807, 835, 1087
MfeI CAATTG 2 cut(s) 219, 1042
MflI RGATCY 1 cut(s) 835
MhlI GDGCHC 1 cut(s) 393
MlsI TGGCCA 1 cut(s) 278
MluNI TGGCCA 1 cut(s) 278
MlyI GAGTC 3 cut(s) 415, 800, 1234
MmeI TCCRAC 2 cut(s) 563, 1086
MnlI CCTC 8 cut(s) 318, 439, 862, 871, 925, 1012, 1139, 1450
Mox20I TGGCCA 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 119
MscI TGGCCA 1 cut(s) 278
MseI TTAA 4 cut(s) 6, 257, 741, 1163
MslI CAYNNNNRTG 2 cut(s) 315, 1277
Msp20I TGGCCA 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 188
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 2 cut(s) 1230, 1334
MspR9I CCNGG 5 cut(s) 250, 840, 1230, 1231, 1334
MunI CAATTG 2 cut(s) 219, 1042
Mva1269I GAATGC 1 cut(s) 635
MvaI CCWGG 2 cut(s) 250, 840
MvnI CGCG 3 cut(s) 691, 1117, 1130
MwoI GCNNNNNNNGC 3 cut(s) 47, 377, 894
NciI CCSGG 3 cut(s) 1230, 1231, 1334
NdeII GATC 4 cut(s) 411, 807, 835, 1087
NlaIII CATG 7 cut(s) 320, 352, 686, 910, 983, 1097, 1153
NlaIV GGNNCC 2 cut(s) 293, 1159
NmeAIII GCCGAG 1 cut(s) 937
NmuCI GTSAC 2 cut(s) 27, 512
NspV TTCGAA 1 cut(s) 1237
PagI TCATGA 1 cut(s) 316
PciSI GCTCTTC 2 cut(s) 398, 895
PctI GAATGC 1 cut(s) 635
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 3 cut(s) 496, 541, 1307
PfoI TCCNGGA 1 cut(s) 1332
PkrI GCNGC 3 cut(s) 187, 190, 899
PleI GAGTC 3 cut(s) 415, 799, 1233
PpsI GAGTC 3 cut(s) 415, 799, 1233
PpuMI RGGWCCY 1 cut(s) 1158
PshBI ATTAAT 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 1158
Psp6I CCWGG 2 cut(s) 248, 838
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 2 cut(s) 248, 838
PspN4I GGNNCC 2 cut(s) 293, 1159
PspPI GGNCC 2 cut(s) 778, 1158
PspPPI RGGWCCY 1 cut(s) 1158
PstI CTGCAG 1 cut(s) 899
PstNI CAGNNNCTG 4 cut(s) 191, 614, 794, 839
PsuI RGATCY 1 cut(s) 835
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 4 cut(s) 214, 554, 1112, 1196
RsaNI GTAC 4 cut(s) 213, 553, 1111, 1195
RseI CAYNNNNRTG 2 cut(s) 315, 1277
SapI GCTCTTC 2 cut(s) 398, 895
SaqAI TTAA 4 cut(s) 6, 257, 741, 1163
SatI GCNGC 3 cut(s) 186, 189, 898
Sau3AI GATC 4 cut(s) 411, 807, 835, 1087
Sau96I GGNCC 2 cut(s) 778, 1158
ScaI AGTACT 1 cut(s) 1112
SchI GAGTC 3 cut(s) 415, 800, 1234
ScrFI CCNGG 5 cut(s) 250, 840, 1230, 1231, 1334
SduI GDGCHC 1 cut(s) 393
SfaNI GCATC 4 cut(s) 37, 862, 1056, 1368
SfcI CTRYAG 2 cut(s) 850, 895
SfuI TTCGAA 1 cut(s) 1237
SinI GGWCC 2 cut(s) 778, 1158
SmaI CCCGGG 1 cut(s) 1231
SmiMI CAYNNNNRTG 2 cut(s) 315, 1277
SmlI CTYRAG 3 cut(s) 86, 416, 740
SmoI CTYRAG 3 cut(s) 86, 416, 740
SpeI ACTAGT 1 cut(s) 1327
SsiI CCGC 2 cut(s) 691, 1130
SspMI CTAG 6 cut(s) 32, 500, 641, 926, 1328, 1382
StyD4I CCNGG 5 cut(s) 248, 838, 1228, 1229, 1332
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 5 cut(s) 238, 749, 1055, 1360, 1434
TaqI TCGA 1 cut(s) 1237
TatI WGTACW 2 cut(s) 212, 1110
TfiI GAWTC 3 cut(s) 496, 541, 1307
Tru1I TTAA 4 cut(s) 6, 257, 741, 1163
Tru9I TTAA 4 cut(s) 6, 257, 741, 1163
TscAI CASTG 4 cut(s) 818, 1323, 1365, 1439
TseFI GTSAC 2 cut(s) 27, 512
TseI GCWGC 3 cut(s) 185, 188, 897
Tsp45I GTSAC 2 cut(s) 27, 512
TspDTI ATGAA 7 cut(s) 305, 508, 651, 923, 1110, 1295, 1379
TspMI CCCGGG 1 cut(s) 1229
TspRI CASTG 4 cut(s) 818, 1323, 1365, 1439
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 778, 1158
VspI ATTAAT 1 cut(s) 6
XapI RAATTY 2 cut(s) 71, 910
XbaI TCTAGA 1 cut(s) 499
XmaI CCCGGG 1 cut(s) 1229
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 6 cut(s) 32, 500, 641, 926, 1328, 1382
ZrmI AGTACT 1 cut(s) 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.