Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010443

Physical Location & Seq

Genomic Coordinates Forward (+)

927102 .. 930431

Gene Structure 3330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0010400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCAGCCGCTGCTCGAGTCAGGGGGAAGAATGGAGGATGATTCACCAAATCCTCCCGTTTCATTGCATGCCCGGATTTCTGCCCTTAAGACAATGGCTTGGGAAGAATACAAAAGCAAGCCAATCTCGCATTGGATTCTTCTACTTCTAAGCAGTGCGGCAATGCTTGTAGCGTTTCCTGCATCTAGCCTTCTATCTCGTATCTATTTTGCCAATGGCGGCACTAGCAAGTGGATCATTTCATGGGTGGCTGTTGCAGGGTGGCCTTTGACTGCTTTGATCTTACTGCCTACGTACTTCTTCTGCAAAACCTTTCCCACCCCTCTGAATTTAAAACTTACATTATCTTATGCTTTCCTAGGTTTCCTAAGTGCTGCTGACAATCTTATGTATGCATATGCATATGCATACCTCCCAGCATCTACTGCTTCTCTTCTTGCATCATCATCTCTTGTATTTTCTGCATTGTTTGGATATATACTGGTGAAGAACAAACTCAATGCTTCAATAGTAAATGCTATTGTGATCATTACTGCTGCTATGACCATCATTGCATTGGATTCTGATTCGGACAGATATGACTATGTCACTGAGAAGCAATACATTCTAGGTTTCGTGTGGGATATTTTGGGATCTGCTCTCCATGGGCTCATTTTTGCTCTCTCAGAGCTAGTTTTTGTGAAGCTACTTGGTAGAAGGTCCTTCCATGTTGTGCTGGAGCAACAACTCGGGGTTTCCCTATTTGCGTTTCTGTTTACCACGATCGGGGTCATTTGGAATAAGGATTTTCAGGGAATGGCATCTGAGGCGAGAAGTTTCGAGGGTGGTAAATCTTCTTATTACCTTGTTCTCATTTGGAGTACAATCACTTTCCAGTTGGGGGTGTTAGGAGCTACTGCTGTGCTTTTTCTGTCTTCCACCGTTCTCGCTGGTGTTCTCAATGCAGTAAGGGTACCACTCACAAGCATTGCAGCTGTGATATTGTTAAACGATCCCATGAGCGGCTTAAAGATCCTCTCTTTGATAGTTACATTTTGGGGATTTGGCTGCTACATCTATGGCAGCTCCTCTGGAAGCAGAGATCCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0008150 GO:0009846 GO:0009856 GO:0012505 GO:0016020 GO:0016192 GO:0019899 GO:0022414 GO:0031984 GO:0032501 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0051020 GO:0051179 GO:0051234 GO:0051704 GO:0065007 GO:0065009 GO:0090406 GO:0098772 GO:0098791 GO:0120025

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

DCB Sec7 Sec7_N

Protein Analysis

363

Amino Acids

39.54

Weight (kDa)

8.38

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	47 - 357	3.5e-93	Purine nucleobase transmembrane transport
EamA	PF00892	62 - 185	1.3e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19610
fragaria_vesca	FvH4_1g05140
malus_domestica	MD02G1050300.v1.1 MD15G1187600.v1.1
prunus_persica	Prupe.7G228800_v2.0.a1
pyrus_communis	pycom02g04190 pycom02g04200 pycom15g16840
rosa_chinensis	RchiOBHm_Chr2g0090771 RchiOBHm_Chr2g0090781
rosa_laevigata	RLG00000016142
rosa_multiflora	Rmu_co8351113.1_g000001 Rmu_ssc0000367.1_g000008
rosa_roxburghii	Rroxscaffold_2G00150830
rosa_rugosa	Rorug02G0010400
rosa_samantha	Rh2AG056400 Rh2BG055100 Rh2CG057500 Rh2DG056000 Rh2DG056100
rosa_wichuraiana	Rw2G004610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	952
AccB1I	GGYRCC	1 cut(s)	952
AccBSI	CCGCTC	1 cut(s)	1002
AciI	CCGC	4 cut(s)	8, 158, 219, 1002
AclWI	GGATC	5 cut(s)	242, 640, 986, 1006, 1076
AcsI	RAATTY	1 cut(s)	328
AfaI	GTAC	3 cut(s)	296, 862, 954
AfiI	CCNNNNNNNGG	3 cut(s)	765, 880, 1001
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	507
AluBI	AGCT	5 cut(s)	670, 685, 893, 974, 1065
AluI	AGCT	5 cut(s)	670, 685, 893, 974, 1065
AlwI	GGATC	5 cut(s)	242, 640, 986, 1006, 1076
AlwNI	CAGNNNCTG	1 cut(s)	10
Ama87I	CYCGRG	2 cut(s)	14, 728
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	7 cut(s)	4, 10, 374, 536, 971, 1047, 1062
ApoI	RAATTY	1 cut(s)	328
Asp718I	GGTACC	1 cut(s)	952
AspA2I	CCTAGG	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	699
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	2 cut(s)	36, 496
AvaI	CYCGRG	2 cut(s)	14, 728
AvaII	GGWCC	1 cut(s)	699
AvrII	CCTAGG	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	952
BanII	GRGCYC	1 cut(s)	651
BbsI	GAAGAC	1 cut(s)	906
BbvI	GCAGC	6 cut(s)	16, 361, 523, 983, 1034, 1074
BccI	CCATC	1 cut(s)	554
BclI	TGATCA	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	73
BfaI	CTAG	5 cut(s)	186, 225, 359, 608, 671
BfrI	CTTAAG	1 cut(s)	86
BlnI	CCTAGG	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	699
BmeT110I	CYCGRG	2 cut(s)	14, 728
BmgT120I	GGNCC	1 cut(s)	699
BmiI	GGNNCC	1 cut(s)	954
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	4 cut(s)	191, 428, 449, 809
BpiI	GAAGAC	1 cut(s)	906
BpmI	CTGGAG	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	358, 643
Bsc4I	CCNNNNNNNGG	3 cut(s)	765, 880, 1001
Bse1I	ACTGG	2 cut(s)	486, 874
Bse3DI	GCAATG	4 cut(s)	62, 168, 549, 966
BseDI	CCNNGG	2 cut(s)	358, 643
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	3 cut(s)	765, 880, 1001
BseMI	GCAATG	4 cut(s)	62, 168, 549, 966
BseMII	CTCAG	3 cut(s)	582, 678, 795
BseNI	ACTGG	2 cut(s)	486, 874
BseRI	GAGGAG	1 cut(s)	1057
BseXI	GCAGC	6 cut(s)	16, 361, 523, 983, 1034, 1074
BseYI	CCCAGC	1 cut(s)	415
Bsh1285I	CGRYCG	1 cut(s)	765
BshFI	GGCC	1 cut(s)	265
BshNI	GGYRCC	1 cut(s)	952
BsiEI	CGRYCG	1 cut(s)	765
BsiHKCI	CYCGRG	2 cut(s)	14, 728
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	3 cut(s)	765, 880, 1001
BsnI	GGCC	1 cut(s)	265
BsoBI	CYCGRG	2 cut(s)	14, 728
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp143I	GATC	8 cut(s)	234, 279, 525, 632, 762, 991, 1011, 1081
Bsp19I	CCATGG	1 cut(s)	643
BspACI	CCGC	4 cut(s)	8, 158, 219, 1002
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	3 cut(s)	583, 677, 796
BspLI	GGNNCC	1 cut(s)	954
BspPI	GGATC	5 cut(s)	242, 640, 986, 1006, 1076
BspT107I	GGYRCC	1 cut(s)	952
BspTI	CTTAAG	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	1002
BsrDI	GCAATG	4 cut(s)	62, 168, 549, 966
BsrI	ACTGG	2 cut(s)	486, 874
BssECI	CCNNGG	2 cut(s)	358, 643
BssMI	GATC	8 cut(s)	234, 279, 525, 632, 762, 991, 1011, 1081
BssT1I	CCWWGG	2 cut(s)	358, 643
Bst4CI	ACNGT	1 cut(s)	922
Bst6I	CTCTTC	1 cut(s)	438
BstAFI	CTTAAG	1 cut(s)	86
BstAPI	GCANNNNNTGC	2 cut(s)	10, 425
BstBAI	YACGTR	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	69, 119
BstDEI	CTNAG	5 cut(s)	149, 368, 591, 664, 804
BstDSI	CCRYGG	1 cut(s)	643
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	8 cut(s)	237, 282, 528, 635, 765, 994, 1014, 1084
BstMBI	GATC	8 cut(s)	234, 279, 525, 632, 762, 991, 1011, 1081
BstMCI	CGRYCG	1 cut(s)	765
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 127, 179, 225, 425, 806
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	71
BstSNI	TACGTA	1 cut(s)	294
BstV1I	GCAGC	6 cut(s)	16, 361, 523, 983, 1034, 1074
BstV2I	GAAGAC	1 cut(s)	906
BstX2I	RGATCY	3 cut(s)	632, 1011, 1081
BstYI	RGATCY	3 cut(s)	632, 1011, 1081
BsuRI	GGCC	1 cut(s)	265
BtgI	CCRYGG	1 cut(s)	643
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	160, 588
Cac8I	GCNNGC	2 cut(s)	69, 119
CaiI	CAGNNNCTG	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	699
Csp6I	GTAC	3 cut(s)	295, 861, 953
CviAII	CATG	5 cut(s)	68, 243, 644, 707, 997
CviQI	GTAC	3 cut(s)	295, 861, 953
DdeI	CTNAG	5 cut(s)	149, 368, 591, 664, 804
DpnI	GATC	8 cut(s)	236, 281, 527, 634, 764, 993, 1013, 1083
DpnII	GATC	8 cut(s)	234, 279, 525, 632, 762, 991, 1011, 1081
DraI	TTTAAA	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco105I	TACGTA	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	358, 643
Eco24I	GRGCYC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	699
Eco88I	CYCGRG	2 cut(s)	14, 728
EcoO109I	RGGNCCY	1 cut(s)	699
EcoT14I	CCWWGG	2 cut(s)	358, 643
EcoT22I	ATGCAT	3 cut(s)	397, 403, 409
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	2 cut(s)	358, 643
FaeI	CATG	5 cut(s)	71, 246, 647, 710, 1000
FatI	CATG	5 cut(s)	67, 242, 643, 706, 996
FauNDI	CATATG	2 cut(s)	397, 403
FbaI	TGATCA	1 cut(s)	525
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	651
FspBI	CTAG	5 cut(s)	186, 225, 359, 608, 671
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	5 cut(s)	71, 246, 647, 710, 1000
HinfI	GANTC	5 cut(s)	17, 41, 136, 560, 566
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	2 cut(s)	36, 496
Hpy166II	GTNNAC	1 cut(s)	756
Hpy188I	TCNGA	5 cut(s)	327, 565, 571, 667, 805
Hpy188III	TCNNGA	1 cut(s)	1071
Hpy8I	GTNNAC	1 cut(s)	756
HpyAV	CCTTC	3 cut(s)	200, 690, 712
HpyCH4III	ACNGT	1 cut(s)	922
HpyCH4IV	ACGT	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 127, 179, 225, 425, 806
HpyF3I	CTNAG	5 cut(s)	149, 368, 591, 664, 804
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	5 cut(s)	71, 246, 647, 710, 1000
KpnI	GGTACC	1 cut(s)	956
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	8 cut(s)	234, 279, 525, 632, 762, 991, 1011, 1081
LmnI	GCTCC	3 cut(s)	718, 890, 1070
Lsp1109I	GCAGC	6 cut(s)	16, 361, 523, 983, 1034, 1074
LweI	GCATC	4 cut(s)	191, 428, 449, 809
MaeI	CTAG	5 cut(s)	186, 225, 359, 608, 671
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	586, 1027
MalI	GATC	8 cut(s)	236, 281, 527, 634, 764, 993, 1013, 1083
MbiI	CCGCTC	1 cut(s)	1002
MboI	GATC	8 cut(s)	234, 279, 525, 632, 762, 991, 1011, 1081
MboII	GAAGA	8 cut(s)	39, 116, 131, 292, 425, 499, 825, 906
MflI	RGATCY	3 cut(s)	632, 1011, 1081
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	8 cut(s)	28, 63, 333, 422, 799, 814, 1025, 1078
Mph1103I	ATGCAT	3 cut(s)	397, 403, 409
MseI	TTAA	4 cut(s)	87, 332, 986, 1007
MspA1I	CMGCKG	2 cut(s)	10, 974
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	6 cut(s)	10, 127, 179, 225, 425, 806
NciI	CCSGG	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	643
NdeI	CATATG	2 cut(s)	397, 403
NdeII	GATC	8 cut(s)	234, 279, 525, 632, 762, 991, 1011, 1081
NlaIII	CATG	5 cut(s)	71, 246, 647, 710, 1000
NlaIV	GGNNCC	1 cut(s)	954
NmuCI	GTSAC	1 cut(s)	586
NsiI	ATGCAT	3 cut(s)	397, 403, 409
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PaeR7I	CTCGAG	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	41, 136, 560, 566
PflFI	GACNNNGTC	1 cut(s)	584
Ple19I	CGATCG	1 cut(s)	765
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	294
PpuMI	RGGWCCY	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	699
PspFI	CCCAGC	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	954
PspPI	GGNCC	1 cut(s)	699
PspPPI	RGGWCCY	1 cut(s)	699
PspXI	VCTCGAGB	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	10
PsuI	RGATCY	3 cut(s)	632, 1011, 1081
PsyI	GACNNNGTC	1 cut(s)	584
PvuI	CGATCG	1 cut(s)	765
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	3 cut(s)	296, 862, 954
RsaNI	GTAC	3 cut(s)	295, 861, 953
SaqAI	TTAA	4 cut(s)	87, 332, 986, 1007
Sau3AI	GATC	8 cut(s)	234, 279, 525, 632, 762, 991, 1011, 1081
Sau96I	GGNCC	1 cut(s)	699
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	4 cut(s)	191, 428, 449, 809
Sfr274I	CTCGAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	699
SlaI	CTCGAG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	14, 86
SmoI	CTYRAG	2 cut(s)	14, 86
SnaBI	TACGTA	1 cut(s)	294
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	4 cut(s)	8, 158, 219, 1002
SspMI	CTAG	5 cut(s)	186, 225, 359, 608, 671
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	358, 643
TaaI	ACNGT	1 cut(s)	922
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	2 cut(s)	15, 819
TasI	AATT	1 cut(s)	328
TatI	WGTACW	1 cut(s)	860
TauI	GCSGC	4 cut(s)	10, 161, 222, 1005
TfiI	GAWTC	4 cut(s)	41, 136, 560, 566
Tru1I	TTAA	4 cut(s)	87, 332, 986, 1007
Tru9I	TTAA	4 cut(s)	87, 332, 986, 1007
TscAI	CASTG	2 cut(s)	160, 595
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	7 cut(s)	4, 10, 374, 536, 971, 1047, 1062
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	3 cut(s)	51, 231, 1077
TspRI	CASTG	2 cut(s)	160, 595
Tth111I	GACNNNGTC	1 cut(s)	584
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	699
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	2 cut(s)	129, 553
XhoI	CTCGAG	1 cut(s)	14
XmaJI	CCTAGG	1 cut(s)	358
XspI	CTAG	5 cut(s)	186, 225, 359, 608, 671
Zsp2I	ATGCAT	3 cut(s)	397, 403, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.