Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006030

Physical Location & Seq

Genomic Coordinates Forward (+)

49085702 .. 49085968

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1393600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTGAGTGTGGATCCCGAGGAGTTGAAGAGAGCTGGGAATGAGAAGTACAGAAGAGGCCATTTTGCAGAGGCTTTGAGCTTGTACAATCGGGCAATTGCATTGTCTCCGGCCAATGCTGCCTACCGGAGCAACCGGGCTGTGGCATTGACGGGTCTAGGACGTCTGACGGAGGCGGTAAGGGAATGCGAGGAGGCGGTGAGGTTGGATCCCAATTATGGCAGGGCTCACCAGCATTTGGGGTCTTTGTTTCTTAGGTTAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0023051 GO:0023056 GO:0033993 GO:0042221 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0097305 GO:1901419 GO:1901421 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_8 Thioredoxin

Protein Analysis

89

Amino Acids

9.77

Weight (kDa)

9.42

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	12 - 72	4.9e-11	Tetratricopeptide repeat
TPR_11	PF13414	13 - 54	5.5e-08	TPR repeat
TPR_19	PF14559	19 - 77	8.1e-08	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53300
fragaria_vesca	FvH4_3g18510 FvH4_3g18510
malus_domestica	MD03G1241500.v1.1 MD11G1260800.v1.1 MD15G1393600.v1.1
prunus_persica	Prupe.4G167400_v2.0.a1 Prupe.4G167400_v2.0.a1 Prupe.4G167400_v2.0.a1
pyrus_communis	pycom03g18830 pycom11g23020
rosa_chinensis	RchiOBHm_Chr5g0031271
rosa_laevigata	RLG00000033297
rosa_multiflora	Rmu_co8169312.1_g000001 Rmu_sc0006236.1_g000002 Rmu_sc0010698.1_g000009 Rmu_sc0027117.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049020
rosa_rugosa	Rorug05G0123400
rosa_samantha	Rh5AG216900 Rh5BG216400 Rh5BG505500 Rh5CG240100 Rh5CG529200 Rh5DG221600 Rh7DG001600
rosa_wichuraiana	Rw5G019840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	238
AciI	CCGC	2 cut(s)	176, 197
AclWI	GGATC	4 cut(s)	8, 21, 203, 216
AcoI	YGGCCR	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	163
AfaI	GTAC	2 cut(s)	50, 86
AfiI	CCNNNNNNNGG	3 cut(s)	142, 218, 238
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	2 cut(s)	35, 81
AluI	AGCT	2 cut(s)	35, 81
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	4 cut(s)	8, 21, 203, 216
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	58, 111
ApeKI	GCWGC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	16, 211, 221
AvaI	CYCGRG	1 cut(s)	17
BamHI	GGATCC	2 cut(s)	13, 208
BanII	GRGCYC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	15, 210
BmrFI	CCNGG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 218, 238
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	3 cut(s)	142, 218, 238
BseRI	GAGGAG	2 cut(s)	35, 206
BseXI	GCAGC	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	35
BshFI	GGCC	2 cut(s)	60, 113
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	110, 127, 136
BslI	CCNNNNNNNGG	3 cut(s)	142, 218, 238
BsmAI	GTCTC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	60, 113
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	13, 208
BspACI	CCGC	2 cut(s)	176, 197
BspANI	GGCC	2 cut(s)	60, 113
BspLI	GGNNCC	2 cut(s)	15, 210
BspPI	GGATC	4 cut(s)	8, 21, 203, 216
BsrGI	TGTACA	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	13, 208
BssNI	GRCGYC	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	23, 49
BstACI	GRCGYC	1 cut(s)	163
BstAUI	TGTACA	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	254
BstKTI	GATC	2 cut(s)	16, 211
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	2 cut(s)	13, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	2 cut(s)	13, 208
BstYI	RGATCY	2 cut(s)	13, 208
BsuRI	GGCC	2 cut(s)	60, 113
Csp6I	GTAC	2 cut(s)	49, 85
CviJI	RGCY	7 cut(s)	35, 60, 74, 81, 113, 140, 227
CviKI_1	RGCY	7 cut(s)	35, 60, 74, 81, 113, 140, 227
CviQI	GTAC	2 cut(s)	49, 85
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	2 cut(s)	15, 210
DpnII	GATC	2 cut(s)	13, 208
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	23, 49
EarI	CTCTTC	2 cut(s)	23, 49
Eco24I	GRGCYC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	229
FaiI	YATR	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	120
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	1 cut(s)	120
GsaI	CCCAGC	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	60, 113
HapII	CCGG	3 cut(s)	110, 127, 136
Hin1I	GRCGYC	1 cut(s)	163
HpaII	CCGG	3 cut(s)	110, 127, 136
HphI	GGTGA	3 cut(s)	16, 211, 221
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	68, 101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	163
Hsp92I	GRCGYC	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	13, 208
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	6 cut(s)	21, 123, 140, 149, 208, 245
Lsp1109I	GCAGC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	163
MalI	GATC	2 cut(s)	15, 210
MboI	GATC	2 cut(s)	13, 208
MboII	GAAGA	2 cut(s)	40, 66
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	2 cut(s)	13, 208
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	2 cut(s)	96, 214
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	7 cut(s)	13, 50, 64, 166, 184, 187, 195
MspI	CCGG	3 cut(s)	110, 127, 136
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	13, 208
NlaIV	GGNNCC	2 cut(s)	15, 210
PctI	GAATGC	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	15, 210
PsuI	RGATCY	2 cut(s)	13, 208
RsaI	GTAC	2 cut(s)	50, 86
RsaNI	GTAC	2 cut(s)	49, 85
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	13, 208
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	5 cut(s)	37, 83, 166, 206, 260
Sse9I	AATT	2 cut(s)	96, 214
SsiI	CCGC	2 cut(s)	176, 197
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	135
TaiI	ACGT	1 cut(s)	166
TasI	AATT	2 cut(s)	96, 214
TatI	WGTACW	2 cut(s)	48, 84
TseI	GCWGC	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	238
XspI	CTAG	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.