Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006030

Physical Location & Seq

Genomic Coordinates Reverse (-)

80321013 .. 80321477

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG505500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCGCACTCCGGGAAGCCCATTTCGGAGCCAAGCGTCGACTCCTCACCCTCCGATCGCCTCCGTGACTCACTGAGTTGCAAGGCCAACAAGCCTGATTTCCGAGAACTCGATCTGGGCTCGCCCGTTTCGCCGCTGCGGACTCGCCAGAGTCGTGGGCTCGCCACTGCCACCAGCATCAGCTCCAGTTCGTCCGGATCGGTGTCGGGTCGGAATGGGCCCAACCCGGTTAATGCAAAGAGGTCCGGTTCGGGGCCTAACAACAACAACAACCACTCCGGCGAGCTCTCCGGCTCCAGCGAGAGCAGTCCCACAAATACCCAGAATAGCTCCAAACCGGGTCATACGAGATCCAATTCCGGCTCCGCCCACCCGTTAATTTACTCGGGTCAGAGCTCTTCCGCTGTGAAATCGTCTCTGAGATCGAATGTTCTGCCCACCGGGAACATATGCCCGGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0023051 GO:0023056 GO:0033993 GO:0042221 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0097305 GO:1901419 GO:1901421 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_8 Thioredoxin

Protein Analysis

154

Amino Acids

15.82

Weight (kDa)

10.13

Isoelectric Point (pI)

72.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53300
fragaria_vesca	FvH4_3g18510 FvH4_3g18510
malus_domestica	MD03G1241500.v1.1 MD11G1260800.v1.1 MD15G1393600.v1.1
prunus_persica	Prupe.4G167400_v2.0.a1 Prupe.4G167400_v2.0.a1 Prupe.4G167400_v2.0.a1
pyrus_communis	pycom03g18830 pycom11g23020
rosa_chinensis	RchiOBHm_Chr5g0031271
rosa_laevigata	RLG00000033297
rosa_multiflora	Rmu_co8169312.1_g000001 Rmu_sc0006236.1_g000002 Rmu_sc0010698.1_g000009 Rmu_sc0027117.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049020
rosa_rugosa	Rorug05G0123400
rosa_samantha	Rh5AG216900 Rh5BG216400 Rh5BG505500 Rh5CG240100 Rh5CG529200 Rh5DG221600 Rh7DG001600
rosa_wichuraiana	Rw5G019840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AccIII	TCCGGA	1 cut(s)	194
AciI	CCGC	4 cut(s)	134, 139, 366, 402
AclWI	GGATC	2 cut(s)	205, 345
AfiI	CCNNNNNNNGG	1 cut(s)	252
AluBI	AGCT	4 cut(s)	183, 286, 330, 396
AluI	AGCT	4 cut(s)	183, 286, 330, 396
Alw21I	GWGCWC	2 cut(s)	288, 398
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	2 cut(s)	205, 345
Ama87I	CYCGRG	1 cut(s)	385
Aor13HI	TCCGGA	1 cut(s)	194
AoxI	GGCC	3 cut(s)	84, 218, 254
ApaI	GGGCCC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	136
AspS9I	GGNCC	4 cut(s)	218, 219, 243, 254
AsuC2I	CCSGG	5 cut(s)	13, 227, 339, 442, 455
AsuHPI	GGTGA	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	222
BanII	GRGCYC	5 cut(s)	122, 162, 222, 288, 398
Bbv12I	GWGCWC	2 cut(s)	288, 398
BbvI	GCAGC	1 cut(s)	123
BcgI	CGANNNNNNTGC	2 cut(s)	415, 449
BcnI	CCSGG	5 cut(s)	13, 227, 339, 442, 455
BcoDI	GTCTC	1 cut(s)	420
BisI	GCNGC	2 cut(s)	134, 137
BlsI	GCNGC	2 cut(s)	135, 138
Bme1390I	CCNGG	5 cut(s)	13, 227, 339, 442, 455
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	4 cut(s)	218, 219, 243, 254
BmiI	GGNNCC	5 cut(s)	30, 220, 255, 295, 364
BmrFI	CCNGG	5 cut(s)	13, 227, 339, 442, 455
BmsI	GCATC	1 cut(s)	186
BpmI	CTGGAG	2 cut(s)	169, 280
BpuMI	CCSGG	5 cut(s)	13, 227, 339, 442, 455
BsaWI	WCCGGW	2 cut(s)	194, 245
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	186
BseAI	TCCGGA	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	65, 410
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	34
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	3 cut(s)	86, 220, 256
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	288, 398
BsiHKCI	CYCGRG	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	420
BsmBI	CGTCTC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	3 cut(s)	86, 220, 256
BsoBI	CYCGRG	1 cut(s)	385
Bsp120I	GGGCCC	1 cut(s)	218
Bsp1286I	GDGCHC	5 cut(s)	122, 162, 222, 288, 398
Bsp13I	TCCGGA	1 cut(s)	194
Bsp143I	GATC	5 cut(s)	55, 112, 197, 350, 422
BspACI	CCGC	4 cut(s)	134, 139, 366, 402
BspANI	GGCC	3 cut(s)	86, 220, 256
BspCNI	CTCAG	2 cut(s)	66, 411
BspEI	TCCGGA	1 cut(s)	194
BspLI	GGNNCC	5 cut(s)	30, 220, 255, 295, 364
BspPI	GGATC	2 cut(s)	205, 345
BspQI	GCTCTTC	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	186
BssMI	GATC	5 cut(s)	55, 112, 197, 350, 422
Bst6I	CTCTTC	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	122, 162, 284
BstDEI	CTNAG	2 cut(s)	74, 419
BstKTI	GATC	5 cut(s)	58, 115, 200, 353, 425
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	5 cut(s)	55, 112, 197, 350, 422
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstSCI	CCNGG	5 cut(s)	11, 225, 337, 440, 453
BstSLI	GKGCMC	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	350
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	3 cut(s)	86, 220, 256
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	71, 165
Cac8I	GCNNGC	3 cut(s)	122, 162, 284
Cfr13I	GGNCC	4 cut(s)	218, 219, 243, 254
CseI	GACGC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	74, 419
DpnI	GATC	5 cut(s)	57, 114, 199, 352, 424
DpnII	GATC	5 cut(s)	55, 112, 197, 350, 422
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
EciI	GGCGGA	1 cut(s)	355
Ecl136II	GAGCTC	2 cut(s)	286, 396
Eco24I	GRGCYC	5 cut(s)	122, 162, 222, 288, 398
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	2 cut(s)	286, 396
Eco88I	CYCGRG	1 cut(s)	385
EcoICRI	GAGCTC	2 cut(s)	286, 396
EcoO109I	RGGNCCY	1 cut(s)	254
EcoT38I	GRGCYC	5 cut(s)	122, 162, 222, 288, 398
Esp3I	CGTCTC	1 cut(s)	420
FaiI	YATR	3 cut(s)	345, 449, 451
FaqI	GGGAC	1 cut(s)	294
FauNDI	CATATG	1 cut(s)	449
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	134, 137
FriOI	GRGCYC	5 cut(s)	122, 162, 222, 288, 398
Fsp4HI	GCNGC	2 cut(s)	134, 137
GluI	GCNGC	2 cut(s)	134, 137
GsuI	CTGGAG	2 cut(s)	169, 280
HaeIII	GGCC	3 cut(s)	86, 220, 256
HgaI	GACGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	4 cut(s)	41, 68, 142, 151
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	6 cut(s)	28, 55, 104, 213, 393, 420
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	81, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	2 cut(s)	74, 419
Kpn2I	TCCGGA	1 cut(s)	194
Kzo9I	GATC	5 cut(s)	55, 112, 197, 350, 422
LguI	GCTCTTC	1 cut(s)	403
LmnI	GCTCC	5 cut(s)	28, 188, 299, 335, 368
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	5 cut(s)	57, 114, 199, 352, 424
MboI	GATC	5 cut(s)	55, 112, 197, 350, 422
MboII	GAAGA	1 cut(s)	390
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	5 cut(s)	122, 162, 222, 288, 398
MluCI	AATT	2 cut(s)	355, 378
MlyI	GAGTC	4 cut(s)	35, 62, 136, 160
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	4 cut(s)	55, 61, 71, 234
MroI	TCCGGA	1 cut(s)	194
MseI	TTAA	2 cut(s)	231, 377
MspA1I	CMGCKG	2 cut(s)	136, 404
MspR9I	CCNGG	5 cut(s)	13, 227, 339, 442, 455
MwoI	GCNNNNNNNGC	1 cut(s)	130
NciI	CCSGG	5 cut(s)	13, 227, 339, 442, 455
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	5 cut(s)	55, 112, 197, 350, 422
NlaIV	GGNNCC	5 cut(s)	30, 220, 255, 295, 364
NmuCI	GTSAC	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PfoI	TCCNGGA	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	135, 138
Ple19I	CGATCG	1 cut(s)	58
PleI	GAGTC	4 cut(s)	35, 62, 136, 159
PpsI	GAGTC	4 cut(s)	35, 62, 136, 159
Psp124BI	GAGCTC	2 cut(s)	288, 398
PspN4I	GGNNCC	5 cut(s)	30, 220, 255, 295, 364
PspOMI	GGGCCC	1 cut(s)	218
PspPI	GGNCC	4 cut(s)	218, 219, 243, 254
PsuI	RGATCY	1 cut(s)	350
PvuI	CGATCG	1 cut(s)	58
SacI	GAGCTC	2 cut(s)	288, 398
SalI	GTCGAC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	231, 377
SatI	GCNGC	2 cut(s)	134, 137
Sau3AI	GATC	5 cut(s)	55, 112, 197, 350, 422
Sau96I	GGNCC	4 cut(s)	218, 219, 243, 254
SchI	GAGTC	4 cut(s)	35, 62, 136, 160
ScrFI	CCNGG	5 cut(s)	13, 227, 339, 442, 455
SduI	GDGCHC	5 cut(s)	122, 162, 222, 288, 398
SetI	ASST	5 cut(s)	185, 245, 288, 332, 398
SfaNI	GCATC	1 cut(s)	186
SinI	GGWCC	1 cut(s)	243
Sse9I	AATT	2 cut(s)	355, 378
SsiI	CCGC	4 cut(s)	134, 139, 366, 402
SstI	GAGCTC	2 cut(s)	288, 398
StyD4I	CCNGG	5 cut(s)	11, 225, 337, 440, 453
TaqI	TCGA	3 cut(s)	39, 111, 425
TasI	AATT	2 cut(s)	355, 378
TauI	GCSGC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	231, 377
Tru9I	TTAA	2 cut(s)	231, 377
TscAI	CASTG	2 cut(s)	78, 172
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	2 cut(s)	78, 172
VpaK11BI	GGWCC	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.