Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006030

Physical Location & Seq

Genomic Coordinates Forward (+)

69175002 .. 69179515

Gene Structure 4514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGTCCCGAATCGGAGCTCCAGAACTGACGTTTTGGGCTCCGGGACGGGCTATTACGGCCACGGGAGCATAATGCGGGGCGGCGCGGCGGCCAAGAGCGTCGGCTCCACCGAGGCGGTGAGCTCCAGAACAAGCGGCGGCGGCGGCGGCGGCGGAGAGTTGGGGAAGAGAGGAATGGGGAGTGTGGATCCGGAAGAGGTGAAGAGAGCTGGGAATGAGCACTACAGAAGAGGCAATTTTGCAGAGGCTTTGAGCTTGTATGATCGGGCGATTGCTTTGGCTCCGGCCAATGCGGCTTACCGGAGCAACCGGGCCGCGGCATTGACCGGTCTAGGGCGGCTGGGGGAGGCGGTGAGGGAGTGTGAGGAGGCTGTGAAGTTGGATCCCAATTATGGCAGAGCTCACCACCGTTTGGGTTCTTTGTTTCTTAGGTTAGGGCAGGTGGAGAATGCCAGGAGGCATCTTTGTCTTCCAGGGCTGCAGCCGGATGCGGCTGAGTTACGGAAATTAGAGGTAGTAGAGAAGCATCTTAAAAAATGTACAGATGCACGTCGTGTAGGAGATTGGAAAAGTGTATTGAGGGAAAATGACTCTGCTATTGCTGCTGGAGCTGACTTTTCTCCCCAGCTCTCTATGTGTAGAGCGGAAGCACATTTGAAGCTCCACCAAATTGATGATGCTGAATCAGTCCTATCAAATATACCCAAATTAGATACATATACCAACTCCTCACAATCTAAGTTCTTTGGGATGCTTTCTGAAGCATATACTTACTTTGTCTTGGCCCAAATTGAGATGGCATTTGGAAGTTACTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0023051 GO:0023056 GO:0033993 GO:0042221 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0097305 GO:1901419 GO:1901421 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_8 Thioredoxin

Protein Analysis

273

Amino Acids

29.4

Weight (kDa)

8.76

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	70 - 130	2.2e-08	Tetratricopeptide repeat
TPR_11	PF13414	71 - 112	2e-06	TPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53300
fragaria_vesca	FvH4_3g18510 FvH4_3g18510
malus_domestica	MD03G1241500.v1.1 MD11G1260800.v1.1 MD15G1393600.v1.1
prunus_persica	Prupe.4G167400_v2.0.a1 Prupe.4G167400_v2.0.a1 Prupe.4G167400_v2.0.a1
pyrus_communis	pycom03g18830 pycom11g23020
rosa_chinensis	RchiOBHm_Chr5g0031271
rosa_laevigata	RLG00000033297
rosa_multiflora	Rmu_co8169312.1_g000001 Rmu_sc0006236.1_g000002 Rmu_sc0010698.1_g000009 Rmu_sc0027117.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049020
rosa_rugosa	Rorug05G0123400
rosa_samantha	Rh5AG216900 Rh5BG216400 Rh5BG505500 Rh5CG240100 Rh5CG529200 Rh5DG221600 Rh7DG001600
rosa_wichuraiana	Rw5G019840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
Acc36I	ACCTGC	1 cut(s)	430
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccBSI	CCGCTC	1 cut(s)	644
AccII	CGCG	2 cut(s)	86, 317
AccIII	TCCGGA	1 cut(s)	190
AclWI	GGATC	4 cut(s)	182, 195, 377, 390
AcoI	YGGCCR	3 cut(s)	58, 90, 285
AcuI	CTGAAG	1 cut(s)	780
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	4 cut(s)	316, 333, 392, 412
AgeI	ACCGGT	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	658
AjiI	CACGTC	1 cut(s)	551
AjnI	CCWGG	2 cut(s)	452, 472
AluBI	AGCT	8 cut(s)	18, 123, 209, 255, 401, 611, 628, 661
AluI	AGCT	8 cut(s)	18, 123, 209, 255, 401, 611, 628, 661
Alw21I	GWGCWC	4 cut(s)	20, 125, 222, 403
AlwI	GGATC	4 cut(s)	182, 195, 377, 390
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	5 cut(s)	58, 90, 285, 312, 783
ApeKI	GCWGC	3 cut(s)	478, 481, 602
AsiGI	ACCGGT	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	4, 312, 784
AsuC2I	CCSGG	2 cut(s)	43, 311
AsuHPI	GGTGA	4 cut(s)	130, 211, 364, 395
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	2 cut(s)	187, 382
BanII	GRGCYC	4 cut(s)	20, 41, 125, 403
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	4 cut(s)	20, 125, 222, 403
BbvI	GCAGC	3 cut(s)	465, 493, 589
BccI	CCATC	1 cut(s)	790
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	454, 474
BcnI	CCSGG	2 cut(s)	43, 311
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	223, 479
BfuAI	ACCTGC	1 cut(s)	430
BglI	GCCNNNNNGGC	1 cut(s)	293
Bme1390I	CCNGG	4 cut(s)	43, 311, 454, 474
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	551
BmgT120I	GGNCC	3 cut(s)	4, 312, 784
BmiI	GGNNCC	6 cut(s)	6, 40, 106, 189, 282, 384
BmrFI	CCNGG	4 cut(s)	43, 311, 454, 474
BmsI	GCATC	6 cut(s)	469, 478, 535, 535, 667, 741
BpiI	GAAGAC	1 cut(s)	461
BpmI	CTGGAG	3 cut(s)	4, 109, 627
BpuMI	CCSGG	2 cut(s)	43, 311
BsaJI	CCNNGG	4 cut(s)	61, 111, 315, 473
BsaWI	WCCGGW	3 cut(s)	190, 300, 326
Bsc4I	CCNNNNNNNGG	4 cut(s)	316, 333, 392, 412
Bse118I	RCCGGY	1 cut(s)	326
BseAI	TCCGGA	1 cut(s)	190
BseBI	CCWGG	2 cut(s)	454, 474
BseDI	CCNNGG	4 cut(s)	61, 111, 315, 473
BseGI	GGATG	2 cut(s)	493, 756
BseLI	CCNNNNNNNGG	4 cut(s)	316, 333, 392, 412
BseMII	CTCAG	1 cut(s)	486
BseRI	GAGGAG	2 cut(s)	380, 718
BseXI	GCAGC	3 cut(s)	465, 493, 589
BseYI	CCCAGC	3 cut(s)	209, 340, 624
Bsh1236I	CGCG	2 cut(s)	86, 317
BshFI	GGCC	5 cut(s)	60, 92, 287, 314, 785
BshTI	ACCGGT	1 cut(s)	326
BsiHKAI	GWGCWC	4 cut(s)	20, 125, 222, 403
BsiSI	CCGG	7 cut(s)	42, 191, 284, 301, 310, 327, 485
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	4 cut(s)	316, 333, 392, 412
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	5 cut(s)	60, 92, 287, 314, 785
Bsp1286I	GDGCHC	5 cut(s)	20, 41, 125, 222, 403
Bsp13I	TCCGGA	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	539
Bsp143I	GATC	3 cut(s)	187, 262, 382
BspANI	GGCC	5 cut(s)	60, 92, 287, 314, 785
BspCNI	CTCAG	1 cut(s)	487
BspEI	TCCGGA	1 cut(s)	190
BspFNI	CGCG	2 cut(s)	86, 317
BspLI	GGNNCC	6 cut(s)	6, 40, 106, 189, 282, 384
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	4 cut(s)	182, 195, 377, 390
BsrBI	CCGCTC	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	4 cut(s)	61, 111, 315, 473
BssMI	GATC	3 cut(s)	187, 262, 382
Bst2UI	CCWGG	2 cut(s)	454, 474
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	4 cut(s)	161, 189, 197, 223
BstAUI	TGTACA	1 cut(s)	539
BstDEI	CTNAG	3 cut(s)	428, 495, 738
BstDSI	CCRYGG	2 cut(s)	61, 315
BstF5I	GGATG	2 cut(s)	493, 756
BstFNI	CGCG	2 cut(s)	86, 317
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	190, 265, 385
BstMBI	GATC	3 cut(s)	187, 262, 382
BstMWI	GCNNNNNNNGC	9 cut(s)	57, 66, 141, 144, 147, 150, 293, 602, 608
BstNI	CCWGG	2 cut(s)	454, 474
BstSCI	CCNGG	4 cut(s)	41, 309, 452, 472
BstSFI	CTRYAG	2 cut(s)	223, 479
BstUI	CGCG	2 cut(s)	86, 317
BstV1I	GCAGC	3 cut(s)	465, 493, 589
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	2 cut(s)	187, 382
BstYI	RGATCY	2 cut(s)	187, 382
BsuRI	GGCC	5 cut(s)	60, 92, 287, 314, 785
BtgI	CCRYGG	2 cut(s)	61, 315
BtrI	CACGTC	1 cut(s)	551
BtsCI	GGATG	2 cut(s)	493, 756
BveI	ACCTGC	1 cut(s)	430
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	4, 312, 784
Cfr42I	CCGCGG	1 cut(s)	318
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	540
CspAI	ACCGGT	1 cut(s)	326
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	3 cut(s)	428, 495, 738
DpnI	GATC	3 cut(s)	189, 264, 384
DpnII	GATC	3 cut(s)	187, 262, 382
DraIII	CACNNNGTG	1 cut(s)	554
EaeI	YGGCCR	3 cut(s)	58, 90, 285
Eam1104I	CTCTTC	4 cut(s)	161, 189, 197, 223
EarI	CTCTTC	4 cut(s)	161, 189, 197, 223
EciI	GGCGGA	1 cut(s)	168
Ecl136II	GAGCTC	3 cut(s)	18, 123, 401
Eco24I	GRGCYC	4 cut(s)	20, 41, 125, 403
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	3 cut(s)	18, 123, 401
Eco57I	CTGAAG	1 cut(s)	780
EcoICRI	GAGCTC	3 cut(s)	18, 123, 401
EcoRII	CCWGG	2 cut(s)	452, 472
EcoT38I	GRGCYC	4 cut(s)	20, 41, 125, 403
FaiI	YATR	9 cut(s)	71, 261, 393, 635, 701, 718, 720, 766, 768
FaqI	GGGAC	1 cut(s)	58
FauI	CCCGC	1 cut(s)	69
FokI	GGATG	2 cut(s)	500, 763
FriOI	GRGCYC	4 cut(s)	20, 41, 125, 403
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	85
GsaI	CCCAGC	3 cut(s)	213, 344, 628
GsuI	CTGGAG	3 cut(s)	4, 109, 627
HaeIII	GGCC	5 cut(s)	60, 92, 287, 314, 785
HapII	CCGG	7 cut(s)	42, 191, 284, 301, 310, 327, 485
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	3 cut(s)	10, 590, 683
HpaII	CCGG	7 cut(s)	42, 191, 284, 301, 310, 327, 485
HphI	GGTGA	4 cut(s)	130, 211, 364, 395
Hpy188I	TCNGA	2 cut(s)	15, 760
Hpy188III	TCNNGA	4 cut(s)	7, 21, 126, 191
Hpy99I	CGWCG	2 cut(s)	104, 555
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	2 cut(s)	30, 550
HpyCH4V	TGCA	3 cut(s)	242, 481, 548
HpyF10VI	GCNNNNNNNGC	9 cut(s)	57, 66, 141, 144, 147, 150, 293, 602, 608
HpyF3I	CTNAG	3 cut(s)	428, 495, 738
HpySE526I	ACGT	2 cut(s)	30, 550
HspAI	GCGC	1 cut(s)	84
Kpn2I	TCCGGA	1 cut(s)	190
KspI	CCGCGG	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	187, 262, 382
Lsp1109I	GCAGC	3 cut(s)	465, 493, 589
LweI	GCATC	6 cut(s)	469, 478, 535, 535, 667, 741
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	30, 550
MaeIII	GTNAC	2 cut(s)	498, 809
MalI	GATC	3 cut(s)	189, 264, 384
MbiI	CCGCTC	1 cut(s)	644
MboI	GATC	3 cut(s)	187, 262, 382
MboII	GAAGA	5 cut(s)	178, 206, 214, 240, 461
MflI	RGATCY	2 cut(s)	187, 382
MhlI	GDGCHC	5 cut(s)	20, 41, 125, 222, 403
MluCI	AATT	6 cut(s)	235, 388, 506, 669, 707, 789
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	1 cut(s)	360
MroI	TCCGGA	1 cut(s)	190
MseI	TTAA	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	7 cut(s)	42, 191, 284, 301, 310, 327, 485
MspR9I	CCNGG	4 cut(s)	43, 311, 454, 474
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	454, 474
MvnI	CGCG	2 cut(s)	86, 317
MwoI	GCNNNNNNNGC	9 cut(s)	57, 66, 141, 144, 147, 150, 293, 602, 608
NciI	CCSGG	2 cut(s)	43, 311
NdeII	GATC	3 cut(s)	187, 262, 382
NlaIV	GGNNCC	6 cut(s)	6, 40, 106, 189, 282, 384
PaqCI	CACCTGC	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	10, 683
PflMI	CCANNNNNTGG	1 cut(s)	412
PfoI	TCCNGGA	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	326
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
Psp124BI	GAGCTC	3 cut(s)	20, 125, 403
Psp6I	CCWGG	2 cut(s)	452, 472
PspFI	CCCAGC	3 cut(s)	209, 340, 624
PspGI	CCWGG	2 cut(s)	452, 472
PspN4I	GGNNCC	6 cut(s)	6, 40, 106, 189, 282, 384
PspPI	GGNCC	3 cut(s)	4, 312, 784
PstI	CTGCAG	1 cut(s)	483
PsuI	RGATCY	2 cut(s)	187, 382
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SacI	GAGCTC	3 cut(s)	20, 125, 403
SacII	CCGCGG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	531
Sau3AI	GATC	3 cut(s)	187, 262, 382
Sau96I	GGNCC	3 cut(s)	4, 312, 784
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	4 cut(s)	43, 311, 454, 474
SduI	GDGCHC	5 cut(s)	20, 41, 125, 222, 403
SfaNI	GCATC	6 cut(s)	469, 478, 535, 535, 667, 741
SfcI	CTRYAG	2 cut(s)	223, 479
Sfr303I	CCGCGG	1 cut(s)	318
SgrBI	CCGCGG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	6 cut(s)	235, 388, 506, 669, 707, 789
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	3 cut(s)	20, 125, 403
StyD4I	CCNGG	4 cut(s)	41, 309, 452, 472
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	2 cut(s)	33, 553
TasI	AATT	6 cut(s)	235, 388, 506, 669, 707, 789
TatI	WGTACW	1 cut(s)	539
TfiI	GAWTC	2 cut(s)	10, 683
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TseI	GCWGC	3 cut(s)	478, 481, 602
TspGWI	ACGGA	1 cut(s)	517
Van91I	CCANNNNNTGG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.