Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006030

Physical Location & Seq

Genomic Coordinates Forward (+)

10897634 .. 10899382

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0123400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAACATATCCGACTTCTTGTCAAAAGCCAGCAACAAAAATTGCTCACGGAATTCCAATATTATCTTTAGAACCACAACTCCAGCATGGCCTTCAATCGCGCGCGACTCCGGTATAGTTTTCAAAGACACTGCTATGGAAAGCCTTTGGAGACGCTGCTCTGTCCTAGCCATGACATGTACTCTGGTCATTGCCTTTGAGCCTAGTCCACTGCAAGATTTCTGCGTAGCTGACACTACTAGCTCAGTACCAAGAGTAAATGGCCTACCTTGCTTAGACTCCAAGTTAGCACAAGCTGACCATTTCTTCTTCGGAGGGCTTCACCTTGCCGGAAACACCTCAAACCCTCTTGGAGTTAAAATCACTTCAGTCAATGTGGCTCAAATTCCAGGACTCAACACCCTCGGCATCTCACTTGCTCGTATTGACTATGCACCGTGGGGCGTTACCCCTCCTCACACTCATCCTCGTGCCACTGAAATTCTAACAGTCTTGGAAGGCAGTGTTGCTGTTGGGTTTGTGACCTCTAACCCCGACAACAAGCTCATCTCTAAGGTGCTCAACAAGGGTGATGTGTTTGTTTTCCCTGTTGGACTAGTTCACTACCAGCAAAATGTGGGTAATGGAACTGCCGTTTCACTCTCTTCTCTGAGCAGCCAAAACCCTGGAGTCATCACTATTGCTAATTCAGTTTTTGGAGCGAATCCCTCAATTTCGGATGATGTTCTAGCCAAGGCTTTTCAGGTGGACAAATCCATAATTAGTAATCTTCAAGCAAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0023051 GO:0023056 GO:0033993 GO:0042221 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0097305 GO:1901419 GO:1901421 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_8 Thioredoxin

Protein Analysis

261

Amino Acids

27.79

Weight (kDa)

8.29

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	110 - 252	4.5e-49	Cupin
Cupin_2	PF07883	142 - 213	4.7e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006030)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53300
fragaria_vesca	FvH4_3g18510 FvH4_3g18510
malus_domestica	MD03G1241500.v1.1 MD11G1260800.v1.1 MD15G1393600.v1.1
prunus_persica	Prupe.4G167400_v2.0.a1 Prupe.4G167400_v2.0.a1 Prupe.4G167400_v2.0.a1
pyrus_communis	pycom03g18830 pycom11g23020
rosa_chinensis	RchiOBHm_Chr5g0031271
rosa_laevigata	RLG00000033297
rosa_multiflora	Rmu_co8169312.1_g000001 Rmu_sc0006236.1_g000002 Rmu_sc0010698.1_g000009 Rmu_sc0027117.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049020
rosa_rugosa	Rorug05G0123400
rosa_samantha	Rh5AG216900 Rh5BG216400 Rh5BG505500 Rh5CG240100 Rh5CG529200 Rh5DG221600 Rh7DG001600
rosa_wichuraiana	Rw5G019840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	101, 103, 105
AcsI	RAATTY	4 cut(s)	52, 384, 480, 779
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	181, 249
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	96, 124, 773
AhdI	GACNNNNNGTC	1 cut(s)	19
AhlI	ACTAGT	1 cut(s)	595
AjnI	CCWGG	2 cut(s)	388, 664
AloI	GAACNNNNNNTCC	2 cut(s)	64, 96
AluBI	AGCT	4 cut(s)	230, 243, 296, 544
AluI	AGCT	4 cut(s)	230, 243, 296, 544
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	2 cut(s)	89, 262
ApeKI	GCWGC	2 cut(s)	156, 654
ApoI	RAATTY	4 cut(s)	52, 384, 480, 779
AspLEI	GCGC	2 cut(s)	103, 105
AsuHPI	GGTGA	2 cut(s)	314, 581
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	143, 666
BceAI	ACGGC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	390, 666
BcoDI	GTCTC	1 cut(s)	145
BcuI	ACTAGT	1 cut(s)	595
BfaI	CTAG	5 cut(s)	167, 204, 240, 596, 728
BisI	GCNGC	2 cut(s)	157, 655
BlsI	GCNGC	2 cut(s)	158, 656
Bme1390I	CCNGG	2 cut(s)	390, 666
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmrFI	CCNGG	2 cut(s)	390, 666
BmsI	GCATC	1 cut(s)	417
BpmI	CTGGAG	2 cut(s)	66, 687
BsaJI	CCNNGG	4 cut(s)	403, 437, 664, 732
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	390, 666
BseDI	CCNNGG	4 cut(s)	403, 437, 664, 732
BseGI	GGATG	2 cut(s)	463, 724
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	258, 641
BsePI	GCGCGC	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	143, 666
Bsh1236I	CGCG	3 cut(s)	101, 103, 105
BshFI	GGCC	2 cut(s)	91, 264
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	111, 330
BsmAI	GTCTC	1 cut(s)	145
BsmBI	CGTCTC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	91, 264
Bsp1286I	GDGCHC	1 cut(s)	561
BspANI	GGCC	2 cut(s)	91, 264
BspCNI	CTCAG	2 cut(s)	257, 642
BspFNI	CGCG	3 cut(s)	101, 103, 105
BsrDI	GCAATG	1 cut(s)	189
BssECI	CCNNGG	4 cut(s)	403, 437, 664, 732
BssHII	GCGCGC	1 cut(s)	101
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	732
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	390, 666
Bst4CI	ACNGT	2 cut(s)	438, 490
Bst6I	CTCTTC	1 cut(s)	649
BstC8I	GCNNGC	2 cut(s)	31, 103
BstDEI	CTNAG	4 cut(s)	244, 274, 552, 650
BstDSI	CCRYGG	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	463, 724
BstFNI	CGCG	3 cut(s)	101, 103, 105
BstHHI	GCGC	2 cut(s)	103, 105
BstMAI	GTCTC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	2 cut(s)	390, 666
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	388, 664
BstUI	CGCG	3 cut(s)	101, 103, 105
BstV1I	GCAGC	2 cut(s)	143, 666
BstXI	CCANNNNNNTGG	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	91, 264
BtgI	CCRYGG	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	463, 724
BtsI	GCAGTG	3 cut(s)	129, 209, 508
BtsIMutI	CAGTG	4 cut(s)	129, 209, 474, 508
Cac8I	GCNNGC	2 cut(s)	31, 103
CfoI	GCGC	2 cut(s)	103, 105
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	180, 248
CviAII	CATG	3 cut(s)	87, 172, 177
CviQI	GTAC	2 cut(s)	180, 248
DdeI	CTNAG	4 cut(s)	244, 274, 552, 650
DriI	GACNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	649
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	649
Eco130I	CCWWGG	1 cut(s)	732
Eco57I	CTGAAG	1 cut(s)	351
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	388, 664
EcoT14I	CCWWGG	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	3 cut(s)	90, 175, 180
FaiI	YATR	8 cut(s)	8, 88, 116, 137, 173, 178, 432, 758
FatI	CATG	3 cut(s)	86, 171, 176
Fnu4HI	GCNGC	2 cut(s)	157, 655
FokI	GGATG	2 cut(s)	450, 731
Fsp4HI	GCNGC	2 cut(s)	157, 655
FspBI	CTAG	5 cut(s)	167, 204, 240, 596, 728
GlaI	GCGC	2 cut(s)	102, 104
GluI	GCNGC	2 cut(s)	157, 655
GsuI	CTGGAG	2 cut(s)	66, 687
HaeIII	GGCC	2 cut(s)	91, 264
HapII	CCGG	2 cut(s)	111, 330
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	2 cut(s)	103, 105
Hin1II	CATG	3 cut(s)	90, 175, 180
Hin6I	GCGC	2 cut(s)	101, 103
HinP1I	GCGC	2 cut(s)	101, 103
HinfI	GANTC	5 cut(s)	107, 278, 393, 669, 703
HpaII	CCGG	2 cut(s)	111, 330
HphI	GGTGA	2 cut(s)	314, 581
Hpy166II	GTNNAC	3 cut(s)	209, 601, 748
Hpy188I	TCNGA	4 cut(s)	13, 314, 651, 718
Hpy8I	GTNNAC	3 cut(s)	209, 601, 748
HpyAV	CCTTC	2 cut(s)	102, 491
HpyCH4III	ACNGT	2 cut(s)	438, 490
HpyCH4V	TGCA	2 cut(s)	214, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	4 cut(s)	244, 274, 552, 650
Hsp92II	CATG	3 cut(s)	90, 175, 180
HspAI	GCGC	2 cut(s)	101, 103
LmnI	GCTCC	1 cut(s)	698
Lsp1109I	GCAGC	2 cut(s)	143, 666
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	5 cut(s)	167, 204, 240, 596, 728
MaeIII	GTNAC	2 cut(s)	445, 520
MauBI	CGCGCGCG	1 cut(s)	101
MboII	GAAGA	4 cut(s)	298, 301, 636, 761
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	8 cut(s)	40, 52, 384, 480, 685, 711, 759, 779
MlyI	GAGTC	4 cut(s)	101, 272, 387, 678
MmeI	TCCRAC	2 cut(s)	36, 571
MnlI	CCTC	9 cut(s)	308, 349, 357, 413, 462, 465, 477, 535, 718
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	2 cut(s)	134, 468
MspI	CCGG	2 cut(s)	111, 330
MspR9I	CCNGG	2 cut(s)	390, 666
MvaI	CCWGG	2 cut(s)	390, 666
MvnI	CGCG	3 cut(s)	101, 103, 105
MwoI	GCNNNNNNNGC	1 cut(s)	270
NlaIII	CATG	3 cut(s)	90, 175, 180
NmeAIII	GCCGAG	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	1 cut(s)	180
PauI	GCGCGC	1 cut(s)	101
PciI	ACATGT	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	703
PfoI	TCCNGGA	1 cut(s)	388
PkrI	GCNGC	2 cut(s)	158, 656
PleI	GAGTC	4 cut(s)	101, 272, 387, 677
PpsI	GAGTC	4 cut(s)	101, 272, 387, 677
PscI	ACATGT	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	388, 664
PspGI	CCWGG	2 cut(s)	388, 664
PteI	GCGCGC	1 cut(s)	101
RsaI	GTAC	2 cut(s)	181, 249
RsaNI	GTAC	2 cut(s)	180, 248
RseI	CAYNNNNRTG	2 cut(s)	134, 468
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	2 cut(s)	157, 655
SchI	GAGTC	4 cut(s)	101, 272, 387, 678
ScrFI	CCNGG	2 cut(s)	390, 666
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	417
SmiMI	CAYNNNNRTG	2 cut(s)	134, 468
SpeI	ACTAGT	1 cut(s)	595
Sse9I	AATT	8 cut(s)	40, 52, 384, 480, 685, 711, 759, 779
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	5 cut(s)	167, 204, 240, 596, 728
StyD4I	CCNGG	2 cut(s)	388, 664
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	2 cut(s)	438, 490
TasI	AATT	8 cut(s)	40, 52, 384, 480, 685, 711, 759, 779
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	4 cut(s)	136, 216, 481, 508
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	2 cut(s)	156, 654
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	4 cut(s)	136, 216, 481, 508
XapI	RAATTY	4 cut(s)	52, 384, 480, 779
XceI	RCATGY	1 cut(s)	180
XspI	CTAG	5 cut(s)	167, 204, 240, 596, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.