Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004356

Physical Location & Seq

Genomic Coordinates Reverse (-)

4436494 .. 4437781

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1062200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAGAAGCTCCTGGTTCAGTAAACTCTCCCTCATTTTTGGCCCTAGACCGCCACTCAGTTGGTTACTCTTGTGTGTTGTTAGTGTACTCGCACTAATTGCAGTGCTGGGATCATCTTCTTCTCATACATTTGACTCTTTAACTACCACTTCAGTACCCGACATATATACAAACTATAGGAGGCTAAAGGAGCAAGCGGCGGTTGATTATCTGGAGCTGAGGTCTCTTTCATTGGGGGCTAGTCGACAAAGAGAGCTTGGTCTTTGTAGCAAAGAAAGAGAAAGTCATGTGCCTTGTTACAATGTTTCGGCAAACCTTTTAGCTGGGTTTAAAGATGGGGAGGAGTTTGATCGGCATTGTGAAGTATCAAGAAACAGAGAACGGTGTCTAGTTCGCCCTCCTAAGGATTATAAGATCCCCCTGAGGTGGCCAGCTGGTAGGGATGTGATATGGAGTGGAAATGTGAAGATAACCAAAGACCAATTTCTTTCGTCTGGAATCATGACCAAAAGGTTGATGCTACTAGAAGAAAAACAAATTGCCCTTCACTCTGACGATGGTCTGATTTTTGATGGTGTCAAGGATTATTCTCTTCAAATTGCAAAGATGATAGGTTTAAAAAGTGACTCTGACTTTCTTCAAGCCGGTGCCCACGTCATAGTACATTTCATAGTTGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

228

Amino Acids

25.6

Weight (kDa)

8.57

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	96 - 207	4.9e-14	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT2G03480 AT2G03480 AT2G03480
fragaria_vesca	FvH4_4g30250 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD13G1063700.v1.1 MD16G1062200.v1.1 MD16G1062400.v1.1
prunus_persica	Prupe.1G284100_v2.0.a1 Prupe.1G285100_v2.0.a1
pyrus_communis	pycom13g05630 pycom16g05450
rosa_chinensis	RchiOBHm_Chr4g0438551 RchiOBHm_Chr7g0238621
rosa_laevigata	RLG00000006352
rosa_multiflora	Rmu_sc0002327.1_g000004 Rmu_sc0003812.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379560
rosa_rugosa	Rorug04G0311400
rosa_samantha	Rh4AG361800 Rh4BG373200 Rh4CG387100 Rh4DG367800 Rh4DG367900
rosa_wichuraiana	Rw0G006650 Rw0G016600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	647
AccI	GTMKAC	1 cut(s)	244
AciI	CCGC	3 cut(s)	50, 197, 200
AclWI	GGATC	2 cut(s)	118, 409
AcoI	YGGCCR	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	3 cut(s)	87, 156, 663
AfiI	CCNNNNNNNGG	2 cut(s)	403, 426
AgsI	TTSAA	3 cut(s)	596, 641, 677
AjiI	CACGTC	1 cut(s)	655
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	5 cut(s)	9, 217, 256, 323, 434
AluI	AGCT	5 cut(s)	9, 217, 256, 323, 434
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	118, 409
AoxI	GGCC	2 cut(s)	40, 428
AspS9I	GGNCC	1 cut(s)	41
AxyI	CCTNAGG	2 cut(s)	402, 422
BaeGI	GKGCMC	1 cut(s)	652
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BalI	TGGCCA	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	647
BbvCI	CCTCAGC	1 cut(s)	218
BccI	CCATC	3 cut(s)	329, 551, 566
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	4 cut(s)	45, 240, 389, 524
BfmI	CTRYAG	1 cut(s)	175
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	13
BmgBI	CACGTC	1 cut(s)	655
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	649
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	1 cut(s)	507
BoxI	GACNNNNGTC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	233
Bpu10I	CCTNAGC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 426
Bse118I	RCCGGY	1 cut(s)	644
Bse21I	CCTNAGG	2 cut(s)	402, 422
BseBI	CCWGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	2 cut(s)	403, 426
BseMII	CTCAG	3 cut(s)	70, 209, 413
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	652
BseYI	CCCAGC	2 cut(s)	106, 323
BshFI	GGCC	2 cut(s)	42, 430
BshNI	GGYRCC	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	645
BslI	CCNNNNNNNGG	2 cut(s)	403, 426
BsmAI	GTCTC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	42, 430
Bso31I	GGTCTC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp143I	GATC	3 cut(s)	110, 349, 414
BspACI	CCGC	3 cut(s)	50, 197, 200
BspANI	GGCC	2 cut(s)	42, 430
BspCNI	CTCAG	3 cut(s)	69, 210, 414
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	649
BspPI	GGATC	2 cut(s)	118, 409
BspT107I	GGYRCC	1 cut(s)	647
BspTNI	GGTCTC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	644
BssAI	RCCGGY	1 cut(s)	644
BssMI	GATC	3 cut(s)	110, 349, 414
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	1 cut(s)	384
Bst6I	CTCTTC	1 cut(s)	597
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	195, 432
BstDEI	CTNAG	4 cut(s)	56, 218, 402, 422
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	3 cut(s)	113, 352, 417
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	3 cut(s)	110, 349, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 190
BstNI	CCWGG	1 cut(s)	13
BstPAI	GACNNNNGTC	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	652
BstX2I	RGATCY	1 cut(s)	414
BstXI	CCANNNNNNTGG	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	414
Bsu36I	CCTNAGG	2 cut(s)	402, 422
BsuRI	GGCC	2 cut(s)	42, 430
BtrI	CACGTC	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	195, 432
CciI	TCATGA	1 cut(s)	501
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	3 cut(s)	86, 155, 662
CviAII	CATG	2 cut(s)	287, 502
CviQI	GTAC	3 cut(s)	86, 155, 662
DdeI	CTNAG	4 cut(s)	56, 218, 402, 422
DpnI	GATC	3 cut(s)	112, 351, 416
DpnII	GATC	3 cut(s)	110, 349, 414
DraI	TTTAAA	2 cut(s)	331, 618
EaeI	YGGCCR	1 cut(s)	428
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	135
Eco81I	CCTNAGG	2 cut(s)	402, 422
EcoRII	CCWGG	1 cut(s)	11
FaeI	CATG	2 cut(s)	290, 505
FatI	CATG	2 cut(s)	286, 501
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	4 cut(s)	45, 240, 389, 524
GluI	GCNGC	1 cut(s)	198
GsaI	CCCAGC	2 cut(s)	110, 327
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	42, 430
HapII	CCGG	1 cut(s)	645
Hin1II	CATG	2 cut(s)	290, 505
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HinfI	GANTC	3 cut(s)	134, 498, 626
HpaII	CCGG	1 cut(s)	645
Hpy166II	GTNNAC	3 cut(s)	23, 86, 245
Hpy188I	TCNGA	4 cut(s)	553, 564, 631, 683
Hpy188III	TCNNGA	4 cut(s)	212, 369, 495, 502
Hpy8I	GTNNAC	3 cut(s)	23, 86, 245
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	2 cut(s)	101, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 190
HpyF3I	CTNAG	4 cut(s)	56, 218, 402, 422
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	2 cut(s)	290, 505
Kzo9I	GATC	3 cut(s)	110, 349, 414
LmnI	GCTCC	3 cut(s)	14, 190, 214
LpnPI	CCDG	9 cut(s)	25, 92, 197, 309, 420, 434, 444, 480, 658
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	4 cut(s)	45, 240, 389, 524
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	3 cut(s)	63, 296, 623
MalI	GATC	3 cut(s)	112, 351, 416
MboI	GATC	3 cut(s)	110, 349, 414
MboII	GAAGA	6 cut(s)	108, 111, 478, 539, 584, 629
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	652
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	4 cut(s)	96, 482, 537, 597
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	2 cut(s)	128, 620
MnlI	CCTC	6 cut(s)	41, 174, 213, 334, 408, 417
Mox20I	TGGCCA	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	3 cut(s)	140, 330, 617
Msp20I	TGGCCA	1 cut(s)	430
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	645
MspR9I	CCNGG	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	98, 190
NdeII	GATC	3 cut(s)	110, 349, 414
NlaIII	CATG	2 cut(s)	290, 505
NlaIV	GGNNCC	1 cut(s)	649
NmuCI	GTSAC	1 cut(s)	623
PagI	TCATGA	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	498
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	2 cut(s)	128, 620
PpsI	GAGTC	2 cut(s)	128, 620
PshAI	GACNNNNGTC	1 cut(s)	558
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	11
PspFI	CCCAGC	2 cut(s)	106, 323
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	649
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	414
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	3 cut(s)	87, 156, 663
RsaNI	GTAC	3 cut(s)	86, 155, 662
SalI	GTCGAC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	140, 330, 617
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	3 cut(s)	110, 349, 414
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	2 cut(s)	128, 620
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	652
SfaNI	GCATC	1 cut(s)	507
SfcI	CTRYAG	1 cut(s)	175
Sse9I	AATT	4 cut(s)	96, 482, 537, 597
SsiI	CCGC	3 cut(s)	50, 197, 200
SspMI	CTAG	4 cut(s)	45, 240, 389, 524
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	384
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	1 cut(s)	244
TasI	AATT	4 cut(s)	96, 482, 537, 597
TatI	WGTACW	2 cut(s)	85, 661
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	498
Tru1I	TTAA	3 cut(s)	140, 330, 617
Tru9I	TTAA	3 cut(s)	140, 330, 617
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	623
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	2 cut(s)	219, 658
TspRI	CASTG	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	244
XspI	CTAG	4 cut(s)	45, 240, 389, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.