Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004356

Physical Location & Seq

Genomic Coordinates Reverse (-)

63889134 .. 63894590

Gene Structure 5457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG387100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGAGAAGCTCCTGGTTGAGTAAACTCTCTCTCATTTTTGGCCCTAGACCGCCACTCAACTGGTTACTCTTGTGCCTCTTGAGTGTACTTGCACTAATTGCAGTGTTGGGATCATCATCTTCAAGTACATTTGATTCTTTAACCCCTAGTTCAGTACCAGACATCTACACAAACTATAGGAGGCTAAAAGAGCAAGCGGCAGTTGATTATTTGGAGCTGAGGTCTCTCTCACTGGGGGGTAGTAGAGAAAAAGAGCTTGGCCTTTGTGGCAGAGATAAAGAACACTCTGTGCCTTGTTACAATGTTTCAGCAAATCTTTTAGCCGGGTATAAAGATGGGGAGGAGTTTGATCGGCATTGTGAAGTATCAAGAGACAGAGAACAGTGTCTAGTTCGCCCCCCTAAGGACTATAAGATCCCTCTGAGGTGGCCAGCTGGTAGGGACGTGATATGGAGTGGAAACGTGAAGATAACCAAAGACCAATTTCTGTCATCTGGAAGCATGACCAAAAGGTTGATGTTACTAGAAGAAAATCAAATTTCCTTCCACTCTGAGGATGGTTTGATTTTTGATGGTGTCAAGGATTATTCTCGTCAAATTGCCGAGATGCTGGGTTTGAGCAGTGACTCTGAATTTCCTCAAGCTGGTGTTCACACAGTACTAGATATTGGTTGTGGTTTTGGTAGCTTTGGCGCTCATTTAGTATCCCTAAAGTTAATGGCTATTTGTATTGCGGCATATGAGGCAACTGGCAGTCAAGTTCAGTTGGCCCTTGAGAGAGGTCTTCCAGCAATGATCGGCAACTTCATCACAAGACAACTTCCATATCCATCTCTGTCATTTGAAATGGTTCATTGTGCTCAATGTGGTATTCTTTGGGACAAAAAAGATGGGATGTTTCTTTTAGAAGTTGACCGGGTACTCAAGCCTGGAGGTTACTTTGTTTTAACCTCACCCACAAGCCAGCCATATGGAAGTTCATCGACTATGAAGGAGGGCATAGCTACAGACTCTTCACCAATGGAAGAATTAACCCAGAAAATCTGTTGGACTCTTTTGGCTCAAAAATATGAAACTTTTATCTGGCAGAAAACTGTGGATTCTAATTGCTATACATCTCGCAAGCAGGGTGCTATTCCACTTTGTCAAGAAGAGCATGAGGTTCAATCATATTATAAGCCCCTAGTATCATGTATAAGTGGGACCATGAGCAAACGCTGGACTCCAATCCGAAATAGGTCTAGTTCCCGGTGGAACTCATCTAAGCTTGAAGTTCATGGAAAGTATTGTTCCATCGTACATTTGTTTTTCTTCACTTCTCTGTCTCTCTTCGCTGGAAGGGAAGTTCAGCCTGATGATTTCTTTGAAGACTTACAGGTTTGGAGATCAGCTCTAAAGAACTATTGGTCTTTGCTTACCCCCTTGATTTTCTCTGACCACCCCAAGAGACCAGGCGATGAAGACCCTTTACCTCCCTTCAACATGATACGCAATGTGCTCGACATGAGTGCTCATTATGGGGGTTTAAATGCTGCTTTTCTGGAGGAAAAGAAATCAGTCTGGGTGATGAATGTTGTGCCTGTTAATGCTCCCTATACACTTCCTCTCATACTAGATCAAGGTTTTGCTGGTGTTTTGCATGACTGGTGCGAACCGTTCCCTACATATCCTCGAACATATGATCTGCTGCATGCAAATGGGCTGCTCTCACACCTGTCTTCAGAGAGGTGCAGCATGATGGACTTATTCTTGGAGATGGACCGGATTCTGCGCCCTGAGGGCTGGGTTGTTCTCTGTGATAAAGTGGGAGCTATAGAGATGGCACGCATGTTTGCTACCCAAGTACGTTGGGAAGCAAGGGTGATTGACCCTCAGAATGGCAGTGACCAGAGACTACTTTTGTTGGAACCCATTGACCATGTTCGTTGTGCTCTCGTCTGCAAGGAATGGCATTCCCTTGCAAAAGAATATAATCTTACAACGCAGCGCTGGCACAGGGTGCTTCCTATGCTCATGATATCTGCCGGATCCTCAAAAATGATGTACAGTGTTTCCGAAAGAAAAAACTACATTAAAAATGTTCAGCTTCCGTACAGACATAAGAGGCTTTTTGGCTCTAGCCATGGTTGGTTGGCCATAGTAGACAAAATTAGTCGTGCCATAACTCTCATGAACCCTTTTGCACAAGCAATGGCGCCCATTCATCTCCCTCATTTGAATGAGGACGTCTCAAAGGTCATCCTATCTGCTGATCCTGCTTTGAATCCGAATAGTTATATGGTTATAGCAATCTACAATTCGATACACTTGACTTTCCTTAAAGGAGGGCAGGAAGATTGGAATTGCATCAGACTAGACACCCTCTTACTGATGTTATGTTTTATAAAAGCCAAATCTACGCGGTATCAATTCATGGAACGATTGTGTCAATCAATGTTAACATGTGTGTTATCAACTCTTCACATCCTCCAGAATTACTGGATGTTCGGGCATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

832

Amino Acids

94.48

Weight (kDa)

7.28

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	97 - 630	5.5e-132	Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_25	PF13649	220 - 312	1.2e-06	Methyltransferase domain
Methyltransf_11	PF08241	221 - 316	1.6e-06	Methyltransferase domain
Beta-prop_KIB1-4	PF03478	681 - 786	6.1e-14	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT2G03480 AT2G03480 AT2G03480
fragaria_vesca	FvH4_4g30250 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD13G1063700.v1.1 MD16G1062200.v1.1 MD16G1062400.v1.1
prunus_persica	Prupe.1G284100_v2.0.a1 Prupe.1G285100_v2.0.a1
pyrus_communis	pycom13g05630 pycom16g05450
rosa_chinensis	RchiOBHm_Chr4g0438551 RchiOBHm_Chr7g0238621
rosa_laevigata	RLG00000006352
rosa_multiflora	Rmu_sc0002327.1_g000004 Rmu_sc0003812.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379560
rosa_rugosa	Rorug04G0311400
rosa_samantha	Rh4AG361800 Rh4BG373200 Rh4CG387100 Rh4DG367800 Rh4DG367900
rosa_wichuraiana	Rw0G006650 Rw0G016600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1176, 2384
AatII	GACGTC	1 cut(s)	2229
AccB1I	GGYRCC	1 cut(s)	2194
AccI	GTMKAC	1 cut(s)	2142
AccII	CGCG	1 cut(s)	2401
AciI	CCGC	4 cut(s)	50, 197, 734, 2401
AclWI	GGATC	5 cut(s)	118, 409, 2022, 2035, 2246
AcoI	YGGCCR	2 cut(s)	428, 2133
AcsI	RAATTY	2 cut(s)	537, 632
AcuI	CTGAAG	1 cut(s)	1704
AcyI	GRCGYC	2 cut(s)	2195, 2226
AdeI	CACNNNGTG	2 cut(s)	289, 1999
AfaI	GTAC	9 cut(s)	87, 127, 156, 660, 921, 1299, 1845, 2045, 2093
AfeI	AGCGCT	1 cut(s)	1988
AfiI	CCNNNNNNNGG	4 cut(s)	403, 553, 644, 1877
AflIII	ACRYGT	1 cut(s)	2441
AgsI	TTSAA	8 cut(s)	123, 845, 1166, 1271, 1367, 1480, 2218, 2263
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	3 cut(s)	11, 928, 1450
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AloI	GAACNNNNNNTCC	2 cut(s)	1329, 1361
Alw21I	GWGCWC	4 cut(s)	862, 1500, 1513, 1933
Alw26I	GTCTC	6 cut(s)	228, 366, 1329, 1441, 1885, 2233
AlwI	GGATC	5 cut(s)	118, 409, 2022, 2035, 2246
Aor51HI	AGCGCT	1 cut(s)	1988
AoxI	GGCC	5 cut(s)	40, 259, 428, 768, 2133
ApeKI	GCWGC	5 cut(s)	1532, 1687, 1702, 1731, 1984
ApoI	RAATTY	2 cut(s)	537, 632
Asp700I	GAANNNNTTC	1 cut(s)	849
AspLEI	GCGC	4 cut(s)	695, 1773, 1989, 2197
AspS9I	GGNCC	4 cut(s)	41, 769, 1203, 1759
AsuC2I	CCSGG	3 cut(s)	325, 917, 1249
AsuHPI	GGTGA	4 cut(s)	945, 1008, 1576, 1873
AvaII	GGWCC	2 cut(s)	1203, 1759
AxyI	CCTNAGG	2 cut(s)	402, 1776
BalI	TGGCCA	2 cut(s)	430, 2135
BamHI	GGATCC	1 cut(s)	2027
BanI	GGYRCC	1 cut(s)	2194
BarI	GAAGNNNNNNTAC	2 cut(s)	1452, 1484
BbsI	GAAGAC	4 cut(s)	776, 1374, 1467, 1710
Bbv12I	GWGCWC	4 cut(s)	862, 1500, 1513, 1933
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	5 cut(s)	1519, 1674, 1689, 1743, 1996
BccI	CCATC	9 cut(s)	329, 551, 566, 838, 884, 1301, 1732, 1750, 1813
BcgI	CGANNNNNNTGC	4 cut(s)	1480, 1490, 1514, 1524
BciT130I	CCWGG	3 cut(s)	13, 930, 1452
BciVI	GTATCC	1 cut(s)	715
BcnI	CCSGG	3 cut(s)	325, 917, 1249
BcoDI	GTCTC	6 cut(s)	228, 366, 1329, 1441, 1885, 2233
BfmI	CTRYAG	3 cut(s)	175, 1005, 1812
BfoI	RGCGCY	3 cut(s)	696, 1990, 2198
BfuI	GTATCC	1 cut(s)	715
BglI	GCCNNNNNGGC	2 cut(s)	267, 1779
BisI	GCNGC	7 cut(s)	198, 735, 1533, 1688, 1703, 1732, 1985
BlsI	GCNGC	7 cut(s)	199, 736, 1534, 1689, 1704, 1733, 1986
BmcAI	AGTACT	1 cut(s)	660
Bme1390I	CCNGG	6 cut(s)	13, 325, 917, 930, 1249, 1452
Bme18I	GGWCC	2 cut(s)	1203, 1759
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	4 cut(s)	41, 769, 1203, 1759
BmiI	GGNNCC	4 cut(s)	1204, 1908, 2029, 2196
BmrFI	CCNGG	6 cut(s)	13, 325, 917, 930, 1249, 1452
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	597, 2355
BmuI	ACTGGG	1 cut(s)	242
BpiI	GAAGAC	4 cut(s)	776, 1374, 1467, 1710
BplI	GAGNNNNNCTC	4 cut(s)	1375, 1407, 2213, 2245
BpmI	CTGGAG	3 cut(s)	951, 1562, 2453
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	4 cut(s)	100, 624, 794, 908
BpuMI	CCSGG	3 cut(s)	325, 917, 1249
BsaBI	GATNNNNATC	1 cut(s)	115
BsaHI	GRCGYC	2 cut(s)	2195, 2226
BsaI	GGTCTC	2 cut(s)	228, 1441
BsaJI	CCNNGG	1 cut(s)	2122
BsaWI	WCCGGW	1 cut(s)	1761
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	4 cut(s)	403, 553, 644, 1877
Bse1I	ACTGG	5 cut(s)	65, 237, 754, 1649, 2483
Bse21I	CCTNAGG	2 cut(s)	402, 1776
Bse3DI	GCAATG	3 cut(s)	798, 1498, 2196
Bse8I	GATNNNNATC	1 cut(s)	115
BseBI	CCWGG	3 cut(s)	13, 930, 1452
BseDI	CCNNGG	1 cut(s)	2122
BseGI	GGATG	5 cut(s)	562, 900, 2238, 2463, 2487
BseJI	GATNNNNATC	1 cut(s)	115
BseLI	CCNNNNNNNGG	4 cut(s)	403, 553, 644, 1877
BseMI	GCAATG	3 cut(s)	798, 1498, 2196
BseMII	CTCAG	5 cut(s)	209, 413, 543, 1767, 1886
BseNI	ACTGG	5 cut(s)	65, 237, 754, 1649, 2483
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	5 cut(s)	1519, 1674, 1689, 1743, 1996
BseYI	CCCAGC	2 cut(s)	610, 1782
BsgI	GTGCAG	1 cut(s)	1750
Bsh1236I	CGCG	1 cut(s)	2401
BshFI	GGCC	5 cut(s)	42, 261, 430, 770, 2135
BshNI	GGYRCC	1 cut(s)	2194
BsiHKAI	GWGCWC	4 cut(s)	862, 1500, 1513, 1933
BsiSI	CCGG	5 cut(s)	324, 916, 1249, 1762, 2025
BslFI	GGGAC	3 cut(s)	455, 893, 1216
BslI	CCNNNNNNNGG	4 cut(s)	403, 553, 644, 1877
BsmAI	GTCTC	6 cut(s)	228, 366, 1329, 1441, 1885, 2233
BsmBI	CGTCTC	1 cut(s)	2233
BsmFI	GGGAC	3 cut(s)	455, 893, 1216
BsmI	GAATGC	2 cut(s)	1951, 2491
BsnI	GGCC	5 cut(s)	42, 261, 430, 770, 2135
Bso31I	GGTCTC	2 cut(s)	228, 1441
Bsp1286I	GDGCHC	4 cut(s)	862, 1500, 1513, 1933
Bsp1407I	TGTACA	1 cut(s)	2043
Bsp143I	GATC	9 cut(s)	110, 349, 414, 795, 1385, 1615, 1681, 2027, 2251
Bsp19I	CCATGG	1 cut(s)	2122
BspACI	CCGC	4 cut(s)	50, 197, 734, 2401
BspANI	GGCC	5 cut(s)	42, 261, 430, 770, 2135
BspCNI	CTCAG	5 cut(s)	210, 414, 544, 1768, 1885
BspFNI	CGCG	1 cut(s)	2401
BspHI	TCATGA	3 cut(s)	2013, 2169, 2495
BspLI	GGNNCC	4 cut(s)	1204, 1908, 2029, 2196
BspPI	GGATC	5 cut(s)	118, 409, 2022, 2035, 2246
BspQI	GCTCTTC	1 cut(s)	1146
BspT107I	GGYRCC	1 cut(s)	2194
BspTNI	GGTCTC	2 cut(s)	228, 1441
BsrDI	GCAATG	3 cut(s)	798, 1498, 2196
BsrGI	TGTACA	1 cut(s)	2043
BsrI	ACTGG	5 cut(s)	65, 237, 754, 1649, 2483
BssECI	CCNNGG	1 cut(s)	2122
BssMI	GATC	9 cut(s)	110, 349, 414, 795, 1385, 1615, 1681, 2027, 2251
BssNI	GRCGYC	2 cut(s)	2195, 2226
BssT1I	CCWWGG	1 cut(s)	2122
Bst2UI	CCWGG	3 cut(s)	13, 930, 1452
Bst4CI	ACNGT	5 cut(s)	384, 658, 1096, 1656, 2048
Bst6I	CTCTTC	4 cut(s)	1018, 1146, 1334, 2463
BstACI	GRCGYC	2 cut(s)	2195, 2226
BstAPI	GCANNNNNTGC	2 cut(s)	98, 1999
BstAUI	TGTACA	1 cut(s)	2043
BstC8I	GCNNGC	7 cut(s)	195, 432, 965, 1124, 1692, 1825, 1991
BstDEI	CTNAG	7 cut(s)	218, 402, 422, 552, 1263, 1776, 1872
BstDSI	CCRYGG	1 cut(s)	2122
BstF5I	GGATG	5 cut(s)	562, 900, 2238, 2463, 2487
BstFNI	CGCG	1 cut(s)	2401
BstH2I	RGCGCY	3 cut(s)	696, 1990, 2198
BstHHI	GCGC	4 cut(s)	695, 1773, 1989, 2197
BstKTI	GATC	9 cut(s)	113, 352, 417, 798, 1388, 1618, 1684, 2030, 2254
BstMAI	GTCTC	6 cut(s)	228, 366, 1329, 1441, 1885, 2233
BstMBI	GATC	9 cut(s)	110, 349, 414, 795, 1385, 1615, 1681, 2027, 2251
BstMWI	GCNNNNNNNGC	9 cut(s)	98, 190, 267, 743, 1779, 1990, 1999, 2008, 2255
BstNI	CCWGG	3 cut(s)	13, 930, 1452
BstNSI	RCATGY	3 cut(s)	1694, 1831, 2445
BstSCI	CCNGG	6 cut(s)	11, 323, 915, 928, 1247, 1450
BstSFI	CTRYAG	3 cut(s)	175, 1005, 1812
BstUI	CGCG	1 cut(s)	2401
BstV1I	GCAGC	5 cut(s)	1519, 1674, 1689, 1743, 1996
BstV2I	GAAGAC	4 cut(s)	776, 1374, 1467, 1710
BstX2I	RGATCY	2 cut(s)	414, 2027
BstXI	CCANNNNNNTGG	2 cut(s)	60, 971
BstYI	RGATCY	2 cut(s)	414, 2027
Bsu36I	CCTNAGG	2 cut(s)	402, 1776
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	5 cut(s)	42, 261, 430, 770, 2135
BtgI	CCRYGG	1 cut(s)	2122
BtgZI	GCGATG	1 cut(s)	1470
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	5 cut(s)	562, 900, 2238, 2463, 2487
BtsI	GCAGTG	3 cut(s)	108, 628, 1888
BtsIMutI	CAGTG	6 cut(s)	108, 230, 389, 628, 1888, 2053
Cac8I	GCNNGC	7 cut(s)	195, 432, 965, 1124, 1692, 1825, 1991
CciI	TCATGA	3 cut(s)	2013, 2169, 2495
CfoI	GCGC	4 cut(s)	695, 1773, 1989, 2197
Cfr13I	GGNCC	4 cut(s)	41, 769, 1203, 1759
Csp6I	GTAC	9 cut(s)	86, 126, 155, 659, 920, 1298, 1844, 2044, 2092
CviQI	GTAC	9 cut(s)	86, 126, 155, 659, 920, 1298, 1844, 2044, 2092
DdeI	CTNAG	7 cut(s)	218, 402, 422, 552, 1263, 1776, 1872
DinI	GGCGCC	1 cut(s)	2196
DpnI	GATC	9 cut(s)	112, 351, 416, 797, 1387, 1617, 1683, 2029, 2253
DpnII	GATC	9 cut(s)	110, 349, 414, 795, 1385, 1615, 1681, 2027, 2251
DraI	TTTAAA	1 cut(s)	1527
DraIII	CACNNNGTG	2 cut(s)	289, 1999
EaeI	YGGCCR	2 cut(s)	428, 2133
Eam1104I	CTCTTC	4 cut(s)	1018, 1146, 1334, 2463
EarI	CTCTTC	4 cut(s)	1018, 1146, 1334, 2463
Eco130I	CCWWGG	1 cut(s)	2122
Eco31I	GGTCTC	2 cut(s)	228, 1441
Eco32I	GATATC	1 cut(s)	2019
Eco47I	GGWCC	2 cut(s)	1203, 1759
Eco47III	AGCGCT	1 cut(s)	1988
Eco57I	CTGAAG	1 cut(s)	1704
Eco81I	CCTNAGG	2 cut(s)	402, 1776
EcoRII	CCWGG	3 cut(s)	11, 928, 1450
EcoRV	GATATC	1 cut(s)	2019
EcoT14I	CCWWGG	1 cut(s)	2122
EgeI	GGCGCC	1 cut(s)	2196
EheI	GGCGCC	1 cut(s)	2196
ErhI	CCWWGG	1 cut(s)	2122
Esp3I	CGTCTC	1 cut(s)	2233
FaqI	GGGAC	3 cut(s)	455, 893, 1216
FauNDI	CATATG	3 cut(s)	739, 970, 1678
FblI	GTMKAC	1 cut(s)	2142
Fnu4HI	GCNGC	7 cut(s)	198, 735, 1533, 1688, 1703, 1732, 1985
FokI	GGATG	5 cut(s)	569, 907, 2225, 2450, 2494
Fsp4HI	GCNGC	7 cut(s)	198, 735, 1533, 1688, 1703, 1732, 1985
GlaI	GCGC	4 cut(s)	694, 1772, 1988, 2196
GluI	GCNGC	7 cut(s)	198, 735, 1533, 1688, 1703, 1732, 1985
GsaI	CCCAGC	2 cut(s)	614, 1786
GsuI	CTGGAG	3 cut(s)	951, 1562, 2453
HaeII	RGCGCY	3 cut(s)	696, 1990, 2198
HaeIII	GGCC	5 cut(s)	42, 261, 430, 770, 2135
HapII	CCGG	5 cut(s)	324, 916, 1249, 1762, 2025
HhaI	GCGC	4 cut(s)	695, 1773, 1989, 2197
Hin1I	GRCGYC	2 cut(s)	2195, 2226
Hin6I	GCGC	4 cut(s)	693, 1771, 1987, 2195
HinP1I	GCGC	4 cut(s)	693, 1771, 1987, 2195
HincII	GTYRAC	2 cut(s)	913, 2439
HindII	GTYRAC	2 cut(s)	913, 2439
HindIII	AAGCTT	1 cut(s)	1265
HinfI	GANTC	8 cut(s)	134, 626, 1010, 1051, 1100, 1222, 1765, 2263
HpaI	GTTAAC	1 cut(s)	2439
HpaII	CCGG	5 cut(s)	324, 916, 1249, 1762, 2025
HphI	GGTGA	4 cut(s)	945, 1008, 1576, 1873
Hpy166II	GTNNAC	6 cut(s)	23, 86, 652, 913, 2143, 2439
Hpy188III	TCNNGA	9 cut(s)	79, 369, 495, 1148, 1541, 2014, 2170, 2470, 2496
Hpy8I	GTNNAC	6 cut(s)	23, 86, 652, 913, 2143, 2439
HpyAV	CCTTC	4 cut(s)	553, 985, 1332, 1486
HpyCH4III	ACNGT	5 cut(s)	384, 658, 1096, 1656, 2048
HpyCH4IV	ACGT	4 cut(s)	444, 462, 1846, 2226
HpyF10VI	GCNNNNNNNGC	9 cut(s)	98, 190, 267, 743, 1779, 1990, 1999, 2008, 2255
HpyF3I	CTNAG	7 cut(s)	218, 402, 422, 552, 1263, 1776, 1872
HpySE526I	ACGT	4 cut(s)	444, 462, 1846, 2226
Hsp92I	GRCGYC	2 cut(s)	2195, 2226
HspAI	GCGC	4 cut(s)	693, 1771, 1987, 2195
KasI	GGCGCC	1 cut(s)	2194
KspAI	GTTAAC	1 cut(s)	2439
Kzo9I	GATC	9 cut(s)	110, 349, 414, 795, 1385, 1615, 1681, 2027, 2251
LguI	GCTCTTC	1 cut(s)	1146
LmnI	GCTCC	4 cut(s)	14, 214, 1594, 1808
Lsp1109I	GCAGC	5 cut(s)	1519, 1674, 1689, 1743, 1996
LweI	GCATC	2 cut(s)	597, 2355
MaeII	ACGT	4 cut(s)	444, 462, 1846, 2226
MaeIII	GTNAC	6 cut(s)	63, 296, 519, 623, 935, 1883
MalI	GATC	9 cut(s)	112, 351, 416, 797, 1387, 1617, 1683, 2029, 2253
MboI	GATC	9 cut(s)	110, 349, 414, 795, 1385, 1615, 1681, 2027, 2251
MflI	RGATCY	2 cut(s)	414, 2027
MhlI	GDGCHC	4 cut(s)	862, 1500, 1513, 1933
MlsI	TGGCCA	2 cut(s)	430, 2135
MluNI	TGGCCA	2 cut(s)	430, 2135
Mly113I	GGCGCC	1 cut(s)	2195
MlyI	GAGTC	4 cut(s)	620, 1004, 1045, 1216
MmeI	TCCRAC	2 cut(s)	1028, 1884
Mox20I	TGGCCA	2 cut(s)	430, 2135
MroXI	GAANNNNTTC	1 cut(s)	849
MscI	TGGCCA	2 cut(s)	430, 2135
MseI	TTAA	9 cut(s)	140, 716, 947, 1031, 1526, 1584, 2073, 2319, 2438
MslI	CAYNNNNRTG	2 cut(s)	1695, 2217
Msp20I	TGGCCA	2 cut(s)	430, 2135
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	5 cut(s)	324, 916, 1249, 1762, 2025
MspR9I	CCNGG	6 cut(s)	13, 325, 917, 930, 1249, 1452
Mva1269I	GAATGC	2 cut(s)	1951, 2491
MvaI	CCWGG	3 cut(s)	13, 930, 1452
MvnI	CGCG	1 cut(s)	2401
MwoI	GCNNNNNNNGC	9 cut(s)	98, 190, 267, 743, 1779, 1990, 1999, 2008, 2255
NarI	GGCGCC	1 cut(s)	2195
NciI	CCSGG	3 cut(s)	325, 917, 1249
NcoI	CCATGG	1 cut(s)	2122
NdeI	CATATG	3 cut(s)	739, 970, 1678
NdeII	GATC	9 cut(s)	110, 349, 414, 795, 1385, 1615, 1681, 2027, 2251
NlaIV	GGNNCC	4 cut(s)	1204, 1908, 2029, 2196
NmeAIII	GCCGAG	1 cut(s)	628
NmuCI	GTSAC	2 cut(s)	623, 1883
NspI	RCATGY	3 cut(s)	1694, 1831, 2445
PaeI	GCATGC	1 cut(s)	1694
PagI	TCATGA	3 cut(s)	2013, 2169, 2495
PciI	ACATGT	1 cut(s)	2441
PciSI	GCTCTTC	1 cut(s)	1146
PctI	GAATGC	2 cut(s)	1951, 2491
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	4 cut(s)	134, 1100, 1765, 2263
PkrI	GCNGC	7 cut(s)	199, 736, 1534, 1689, 1704, 1733, 1986
PleI	GAGTC	4 cut(s)	620, 1004, 1045, 1216
PluTI	GGCGCC	1 cut(s)	2198
PpsI	GAGTC	4 cut(s)	620, 1004, 1045, 1216
PscI	ACATGT	1 cut(s)	2441
PsiI	TTATAA	2 cut(s)	1176, 2384
Psp6I	CCWGG	3 cut(s)	11, 928, 1450
PspFI	CCCAGC	2 cut(s)	610, 1782
PspGI	CCWGG	3 cut(s)	11, 928, 1450
PspN4I	GGNNCC	4 cut(s)	1204, 1908, 2029, 2196
PspPI	GGNCC	4 cut(s)	41, 769, 1203, 1759
PsuI	RGATCY	2 cut(s)	414, 2027
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	9 cut(s)	87, 127, 156, 660, 921, 1299, 1845, 2045, 2093
RsaNI	GTAC	9 cut(s)	86, 126, 155, 659, 920, 1298, 1844, 2044, 2092
RseI	CAYNNNNRTG	2 cut(s)	1695, 2217
SapI	GCTCTTC	1 cut(s)	1146
SaqAI	TTAA	9 cut(s)	140, 716, 947, 1031, 1526, 1584, 2073, 2319, 2438
SatI	GCNGC	7 cut(s)	198, 735, 1533, 1688, 1703, 1732, 1985
Sau3AI	GATC	9 cut(s)	110, 349, 414, 795, 1385, 1615, 1681, 2027, 2251
Sau96I	GGNCC	4 cut(s)	41, 769, 1203, 1759
ScaI	AGTACT	1 cut(s)	660
SchI	GAGTC	4 cut(s)	620, 1004, 1045, 1216
ScrFI	CCNGG	6 cut(s)	13, 325, 917, 930, 1249, 1452
SduI	GDGCHC	4 cut(s)	862, 1500, 1513, 1933
SfaNI	GCATC	2 cut(s)	597, 2355
SfcI	CTRYAG	3 cut(s)	175, 1005, 1812
SfoI	GGCGCC	1 cut(s)	2196
SinI	GGWCC	2 cut(s)	1203, 1759
SmiMI	CAYNNNNRTG	2 cut(s)	1695, 2217
SmlI	CTYRAG	4 cut(s)	79, 639, 773, 923
SmoI	CTYRAG	4 cut(s)	79, 639, 773, 923
SphI	GCATGC	1 cut(s)	1694
SsiI	CCGC	4 cut(s)	50, 197, 734, 2401
SspDI	GGCGCC	1 cut(s)	2194
StyD4I	CCNGG	6 cut(s)	11, 323, 915, 928, 1247, 1450
StyI	CCWWGG	1 cut(s)	2122
TaaI	ACNGT	5 cut(s)	384, 658, 1096, 1656, 2048
TaiI	ACGT	4 cut(s)	447, 465, 1849, 2229
TaqI	TCGA	4 cut(s)	983, 1500, 1672, 2300
TatI	WGTACW	4 cut(s)	85, 125, 658, 2043
TauI	GCSGC	2 cut(s)	200, 737
TfiI	GAWTC	4 cut(s)	134, 1100, 1765, 2263
Tru1I	TTAA	9 cut(s)	140, 716, 947, 1031, 1526, 1584, 2073, 2319, 2438
Tru9I	TTAA	9 cut(s)	140, 716, 947, 1031, 1526, 1584, 2073, 2319, 2438
TscAI	CASTG	6 cut(s)	108, 237, 389, 628, 1888, 2053
TseFI	GTSAC	2 cut(s)	623, 1883
TseI	GCWGC	5 cut(s)	1532, 1687, 1702, 1731, 1984
Tsp45I	GTSAC	2 cut(s)	623, 1883
TspGWI	ACGGA	1 cut(s)	2079
TspRI	CASTG	6 cut(s)	108, 237, 389, 628, 1888, 2053
VpaK11BI	GGWCC	2 cut(s)	1203, 1759
XapI	RAATTY	2 cut(s)	537, 632
XceI	RCATGY	3 cut(s)	1694, 1831, 2445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	2142
XmnI	GAANNNNTTC	1 cut(s)	849
ZraI	GACGTC	1 cut(s)	2227
ZrmI	AGTACT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.