Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004356

Physical Location & Seq

Genomic Coordinates Forward (+)

64092702 .. 64094354

Gene Structure 1653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAACAACTTTCTACATTTAGGTGTGAGCCCTTTCCAACATATCCAAGAACTTATGATATGGTGCATGCACAAGGACTTCTTTCTGTTGAAACTGATCAACAGCGCAGGTGTACCATTCTTGATTTATTCACTGAGATTGATCGATTGCTTCGTCCAGAGGGCTGGGTGATCATCCATGACAAAGCTTCTCTCATTGAATCAGCAAGAGCTTTGACAACAGGTTTGAAGTGGGATGCACGGGTGGTAGAGATTGAAAGTAACAGTGATGAGAAACTACTGATATGCCAAAAGCCCTTCTTTAAGAAACAAGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009059 GO:0009664 GO:0009719 GO:0009725 GO:0009735 GO:0009832 GO:0009987 GO:0010033 GO:0010289 GO:0010383 GO:0010393 GO:0010394 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016741 GO:0017144 GO:0022622 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0042221 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

106

Amino Acids

12.34

Weight (kDa)

5.66

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	9 - 98	5.4e-26	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT2G03480 AT2G03480 AT2G03480
fragaria_vesca	FvH4_4g30250 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD13G1063700.v1.1 MD16G1062200.v1.1 MD16G1062400.v1.1
prunus_persica	Prupe.1G284100_v2.0.a1 Prupe.1G285100_v2.0.a1
pyrus_communis	pycom13g05630 pycom16g05450
rosa_chinensis	RchiOBHm_Chr4g0438551 RchiOBHm_Chr7g0238621
rosa_laevigata	RLG00000006352
rosa_multiflora	Rmu_sc0002327.1_g000004 Rmu_sc0003812.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379560
rosa_rugosa	Rorug04G0311400
rosa_samantha	Rh4AG361800 Rh4BG373200 Rh4CG387100 Rh4DG367800 Rh4DG367900
rosa_wichuraiana	Rw0G006650 Rw0G016600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	99
Acc36I	ACCTGC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	92, 200, 229, 257
AluBI	AGCT	2 cut(s)	188, 212
AluI	AGCT	2 cut(s)	188, 212
ArsI	GACNNNNNNTTYG	2 cut(s)	208, 240
AspLEI	GCGC	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	33
BclI	TGATCA	2 cut(s)	97, 171
BfuAI	ACCTGC	1 cut(s)	99
BmsI	GCATC	1 cut(s)	226
Bsa29I	ATCGAT	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	145
BseGI	GGATG	2 cut(s)	174, 241
BseMII	CTCAG	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	165
BshVI	ATCGAT	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	97, 142, 171
BspCNI	CTCAG	1 cut(s)	127
BspDI	ATCGAT	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	99
BssMI	GATC	3 cut(s)	97, 142, 171
Bst4CI	ACNGT	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	174, 241
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	3 cut(s)	100, 145, 174
BstMBI	GATC	3 cut(s)	97, 142, 171
BstNSI	RCATGY	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	165
Bsu15I	ATCGAT	1 cut(s)	145
BsuTUI	ATCGAT	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	174, 241
BtsIMutI	CAGTG	2 cut(s)	132, 271
BveI	ACCTGC	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	1 cut(s)	108
ClaI	ATCGAT	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	2 cut(s)	68, 179
CviJI	RGCY	5 cut(s)	31, 165, 188, 212, 295
CviKI_1	RGCY	5 cut(s)	31, 165, 188, 212, 295
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	3 cut(s)	99, 144, 173
DpnII	GATC	3 cut(s)	97, 142, 171
Eco24I	GRGCYC	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	2 cut(s)	71, 182
FaiI	YATR	6 cut(s)	43, 57, 62, 69, 180, 286
FalI	AAGNNNNNCTT	4 cut(s)	66, 98, 284, 316
FatI	CATG	2 cut(s)	67, 178
FbaI	TGATCA	2 cut(s)	97, 171
FokI	GGATG	2 cut(s)	161, 248
FriOI	GRGCYC	1 cut(s)	33
GlaI	GCGC	1 cut(s)	107
GsaI	CCCAGC	1 cut(s)	169
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	71, 182
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188III	TCNNGA	2 cut(s)	122, 158
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	67, 71, 239
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	71, 182
HspAI	GCGC	1 cut(s)	106
Ksp22I	TGATCA	2 cut(s)	97, 171
Kzo9I	GATC	3 cut(s)	97, 142, 171
LpnPI	CCDG	4 cut(s)	94, 151, 171, 207
LweI	GCATC	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	99, 144, 173
MboI	GATC	3 cut(s)	97, 142, 171
MhlI	GDGCHC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	1 cut(s)	154
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	22
NdeII	GATC	3 cut(s)	97, 142, 171
NlaIII	CATG	2 cut(s)	71, 182
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PaqCI	CACCTGC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	165
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	97, 142, 171
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	5 cut(s)	26, 113, 190, 214, 226
SfaNI	GCATC	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	22
SphI	GCATGC	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	139, 271
TspRI	CASTG	2 cut(s)	139, 271
XceI	RCATGY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.