Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002327.1

Orthogroup ID

OG0004356

Physical Location & Seq

Genomic Coordinates Forward (+)

23747 .. 25691

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002327.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgagaagctcctggttgagtaaactctctcttatttttggccctagaccgccactcaactggttactcttgtgcctcgtgagtgtacttgcactaattgcagtgttgggatcatcatcttcaagtacatttgattctttaacccctagttcagtaccagacatctacacaaactataggaggctaaaagagcaagcggcagttgattatttggagctgaggtctctctcactggggagtagtagagaaaaagagcttggcctttgtggtagagataaagaacactctgtgccttgttacaatgtttcagcaaatcttttagccgggtataaagatggggaggagtttgatcggcattgtgaagtatcaagagacagagaacagtgtctagttcgcccccctaaggactataagatccctctgaggtggccagctggtagggacgtgatatggagtggaaacgtgaagataaccaaagaccaatttctgtcatctggaagcatgaccaaaaggttgatgttactagaagaaaatcaaatttccttccactctgaggatggtttgatttttgatggtgtcaaggattattctcgtcaaattgccgagatgctgggtttgagcagtgactctgaatttcctcaagctggtgttcacacagtactagatattggttgtggttttggtagctttggcgctcatttagtatccctaaagttaatggctatttgtattgcggcatatgaggcaactggcagtcaagttcagttggcccttgagagaggtcttccagcaatgatcggcaacttcatcacaagacaacttccatatccatctctgtcgtttgaaatggttcattgtgctcaatgtggtattctttgggacaaaaaagatgggatgtttcttttagaagttgaccgggtactcaagcctggaggttactttgttttaacctcacccacaagccagccatatggaagttcatcgactatgaaggagggcatagctacagactcttcaccaatggaagaattaacccagaaaatctgttggactcttttggctcaaaaatatgaaacttttatctggcagaaaactgtggattctaattgctatacatctcgcaagcagggtgctattccactttgtcaagaagagcatgaggttcagtcatattatagatataggaggtttagaacactaggaaggtatctttcatccagtctggttaatctattttcctatccttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

416

Amino Acids

46.78

Weight (kDa)

6.67

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT2G03480 AT2G03480 AT2G03480
fragaria_vesca	FvH4_4g30250 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD13G1063700.v1.1 MD16G1062200.v1.1 MD16G1062400.v1.1
prunus_persica	Prupe.1G284100_v2.0.a1 Prupe.1G285100_v2.0.a1
pyrus_communis	pycom13g05630 pycom16g05450
rosa_chinensis	RchiOBHm_Chr4g0438551 RchiOBHm_Chr7g0238621
rosa_laevigata	RLG00000006352
rosa_multiflora	Rmu_sc0002327.1_g000004 Rmu_sc0003812.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379560
rosa_rugosa	Rorug04G0311400
rosa_samantha	Rh4AG361800 Rh4BG373200 Rh4CG387100 Rh4DG367800 Rh4DG367900
rosa_wichuraiana	Rw0G006650 Rw0G016600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	50, 197, 734
AclWI	GGATC	2 cut(s)	118, 409
AcoI	YGGCCR	1 cut(s)	428
AcsI	RAATTY	2 cut(s)	537, 632
AdeI	CACNNNGTG	1 cut(s)	289
AfaI	GTAC	5 cut(s)	87, 127, 156, 660, 921
AfiI	CCNNNNNNNGG	4 cut(s)	403, 553, 644, 1245
AgsI	TTSAA	2 cut(s)	123, 845
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	11, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	7 cut(s)	9, 217, 256, 434, 644, 687, 1004
AluI	AGCT	7 cut(s)	9, 217, 256, 434, 644, 687, 1004
Alw21I	GWGCWC	1 cut(s)	862
Alw26I	GTCTC	2 cut(s)	228, 366
AlwI	GGATC	2 cut(s)	118, 409
AoxI	GGCC	4 cut(s)	40, 259, 428, 768
ApoI	RAATTY	2 cut(s)	537, 632
Asp700I	GAANNNNTTC	1 cut(s)	849
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	2 cut(s)	41, 769
AsuC2I	CCSGG	2 cut(s)	325, 917
AsuHPI	GGTGA	2 cut(s)	945, 1008
AxyI	CCTNAGG	1 cut(s)	402
BalI	TGGCCA	1 cut(s)	430
BauI	CACGAG	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	776
Bbv12I	GWGCWC	1 cut(s)	862
BbvCI	CCTCAGC	1 cut(s)	218
BccI	CCATC	5 cut(s)	329, 551, 566, 838, 884
BciT130I	CCWGG	2 cut(s)	13, 930
BciVI	GTATCC	1 cut(s)	715
BcnI	CCSGG	2 cut(s)	325, 917
BcoDI	GTCTC	2 cut(s)	228, 366
BfaI	CTAG	6 cut(s)	45, 147, 389, 524, 662, 1199
BfmI	CTRYAG	2 cut(s)	175, 1005
BfoI	RGCGCY	1 cut(s)	696
BfuI	GTATCC	1 cut(s)	715
BisI	GCNGC	2 cut(s)	198, 735
BlsI	GCNGC	2 cut(s)	199, 736
BmcAI	AGTACT	1 cut(s)	660
Bme1390I	CCNGG	4 cut(s)	13, 325, 917, 930
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	2 cut(s)	41, 769
BmrFI	CCNGG	4 cut(s)	13, 325, 917, 930
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	597
BmuI	ACTGGG	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	776
BpmI	CTGGAG	1 cut(s)	951
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	3 cut(s)	624, 794, 908
BpuMI	CCSGG	2 cut(s)	325, 917
BsaBI	GATNNNNATC	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	1244
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	4 cut(s)	403, 553, 644, 1245
Bse1I	ACTGG	4 cut(s)	65, 237, 754, 1218
Bse21I	CCTNAGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	798
Bse8I	GATNNNNATC	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	13, 930
BseDI	CCNNGG	1 cut(s)	1244
BseGI	GGATG	3 cut(s)	562, 900, 1214
BseJI	GATNNNNATC	1 cut(s)	115
BseLI	CCNNNNNNNGG	4 cut(s)	403, 553, 644, 1245
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	3 cut(s)	209, 413, 543
BseNI	ACTGG	4 cut(s)	65, 237, 754, 1218
BseRI	GAGGAG	1 cut(s)	356
BseYI	CCCAGC	1 cut(s)	610
BshFI	GGCC	4 cut(s)	42, 261, 430, 770
BsiHKAI	GWGCWC	1 cut(s)	862
BsiSI	CCGG	2 cut(s)	324, 916
BslFI	GGGAC	2 cut(s)	455, 893
BslI	CCNNNNNNNGG	4 cut(s)	403, 553, 644, 1245
BsmAI	GTCTC	2 cut(s)	228, 366
BsmFI	GGGAC	2 cut(s)	455, 893
BsnI	GGCC	4 cut(s)	42, 261, 430, 770
Bso31I	GGTCTC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	862
Bsp143I	GATC	4 cut(s)	110, 349, 414, 795
BspACI	CCGC	3 cut(s)	50, 197, 734
BspANI	GGCC	4 cut(s)	42, 261, 430, 770
BspCNI	CTCAG	3 cut(s)	210, 414, 544
BspPI	GGATC	2 cut(s)	118, 409
BspQI	GCTCTTC	1 cut(s)	1146
BspTNI	GGTCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	798
BsrI	ACTGG	4 cut(s)	65, 237, 754, 1218
BssECI	CCNNGG	1 cut(s)	1244
BssMI	GATC	4 cut(s)	110, 349, 414, 795
BssSI	CACGAG	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	1244
Bst2BI	CACGAG	1 cut(s)	77
Bst2UI	CCWGG	2 cut(s)	13, 930
Bst4CI	ACNGT	3 cut(s)	384, 658, 1096
Bst6I	CTCTTC	2 cut(s)	1018, 1146
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	4 cut(s)	195, 432, 965, 1124
BstDEI	CTNAG	4 cut(s)	218, 402, 422, 552
BstF5I	GGATG	3 cut(s)	562, 900, 1214
BstH2I	RGCGCY	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	4 cut(s)	113, 352, 417, 798
BstMAI	GTCTC	2 cut(s)	228, 366
BstMBI	GATC	4 cut(s)	110, 349, 414, 795
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 190, 743
BstNI	CCWGG	2 cut(s)	13, 930
BstSCI	CCNGG	4 cut(s)	11, 323, 915, 928
BstSFI	CTRYAG	2 cut(s)	175, 1005
BstV2I	GAAGAC	1 cut(s)	776
BstX2I	RGATCY	1 cut(s)	414
BstXI	CCANNNNNNTGG	2 cut(s)	60, 971
BstYI	RGATCY	1 cut(s)	414
Bsu36I	CCTNAGG	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	4 cut(s)	42, 261, 430, 770
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	3 cut(s)	562, 900, 1214
BtsI	GCAGTG	2 cut(s)	108, 628
BtsIMutI	CAGTG	4 cut(s)	108, 230, 389, 628
Cac8I	GCNNGC	4 cut(s)	195, 432, 965, 1124
CfoI	GCGC	1 cut(s)	695
Cfr13I	GGNCC	2 cut(s)	41, 769
Csp6I	GTAC	5 cut(s)	86, 126, 155, 659, 920
CviAII	CATG	2 cut(s)	502, 1157
CviQI	GTAC	5 cut(s)	86, 126, 155, 659, 920
DdeI	CTNAG	4 cut(s)	218, 402, 422, 552
DpnI	GATC	4 cut(s)	112, 351, 416, 797
DpnII	GATC	4 cut(s)	110, 349, 414, 795
DraIII	CACNNNGTG	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	428
Eam1104I	CTCTTC	2 cut(s)	1018, 1146
EarI	CTCTTC	2 cut(s)	1018, 1146
Eco130I	CCWWGG	1 cut(s)	1244
Eco31I	GGTCTC	1 cut(s)	228
Eco81I	CCTNAGG	1 cut(s)	402
EcoRII	CCWGG	2 cut(s)	11, 928
EcoT14I	CCWWGG	1 cut(s)	1244
ErhI	CCWWGG	1 cut(s)	1244
FaeI	CATG	2 cut(s)	505, 1160
FaqI	GGGAC	2 cut(s)	455, 893
FatI	CATG	2 cut(s)	501, 1156
FauNDI	CATATG	2 cut(s)	739, 970
Fnu4HI	GCNGC	2 cut(s)	198, 735
FokI	GGATG	3 cut(s)	569, 907, 1201
Fsp4HI	GCNGC	2 cut(s)	198, 735
FspBI	CTAG	6 cut(s)	45, 147, 389, 524, 662, 1199
GlaI	GCGC	1 cut(s)	694
GluI	GCNGC	2 cut(s)	198, 735
GsaI	CCCAGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	951
HaeII	RGCGCY	1 cut(s)	696
HaeIII	GGCC	4 cut(s)	42, 261, 430, 770
HapII	CCGG	2 cut(s)	324, 916
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	2 cut(s)	505, 1160
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HincII	GTYRAC	1 cut(s)	913
HindII	GTYRAC	1 cut(s)	913
HinfI	GANTC	5 cut(s)	134, 626, 1010, 1051, 1100
HpaII	CCGG	2 cut(s)	324, 916
HphI	GGTGA	2 cut(s)	945, 1008
Hpy166II	GTNNAC	4 cut(s)	23, 86, 652, 913
Hpy188I	TCNGA	3 cut(s)	423, 553, 631
Hpy188III	TCNNGA	4 cut(s)	79, 369, 495, 1148
Hpy8I	GTNNAC	4 cut(s)	23, 86, 652, 913
HpyAV	CCTTC	3 cut(s)	553, 985, 1197
HpyCH4III	ACNGT	3 cut(s)	384, 658, 1096
HpyCH4IV	ACGT	2 cut(s)	444, 462
HpyCH4V	TGCA	2 cut(s)	92, 101
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 190, 743
HpyF3I	CTNAG	4 cut(s)	218, 402, 422, 552
HpySE526I	ACGT	2 cut(s)	444, 462
Hsp92II	CATG	2 cut(s)	505, 1160
HspAI	GCGC	1 cut(s)	693
Kzo9I	GATC	4 cut(s)	110, 349, 414, 795
LguI	GCTCTTC	1 cut(s)	1146
LmnI	GCTCC	2 cut(s)	14, 214
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	6 cut(s)	45, 147, 389, 524, 662, 1199
MaeII	ACGT	2 cut(s)	444, 462
MaeIII	GTNAC	5 cut(s)	63, 296, 519, 623, 935
MalI	GATC	4 cut(s)	112, 351, 416, 797
MboI	GATC	4 cut(s)	110, 349, 414, 795
MboII	GAAGA	7 cut(s)	111, 478, 539, 776, 1005, 1037, 1163
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	862
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	7 cut(s)	96, 482, 537, 597, 632, 1028, 1105
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	3 cut(s)	620, 1004, 1045
MmeI	TCCRAC	1 cut(s)	1028
Mox20I	TGGCCA	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	849
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	5 cut(s)	140, 716, 947, 1031, 1227
Msp20I	TGGCCA	1 cut(s)	430
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	2 cut(s)	324, 916
MspR9I	CCNGG	4 cut(s)	13, 325, 917, 930
MvaI	CCWGG	2 cut(s)	13, 930
MwoI	GCNNNNNNNGC	3 cut(s)	98, 190, 743
NciI	CCSGG	2 cut(s)	325, 917
NdeI	CATATG	2 cut(s)	739, 970
NdeII	GATC	4 cut(s)	110, 349, 414, 795
NlaIII	CATG	2 cut(s)	505, 1160
NmeAIII	GCCGAG	1 cut(s)	628
NmuCI	GTSAC	1 cut(s)	623
PciSI	GCTCTTC	1 cut(s)	1146
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	2 cut(s)	134, 1100
PkrI	GCNGC	2 cut(s)	199, 736
PleI	GAGTC	3 cut(s)	620, 1004, 1045
PpsI	GAGTC	3 cut(s)	620, 1004, 1045
Psp6I	CCWGG	2 cut(s)	11, 928
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	2 cut(s)	11, 928
PspPI	GGNCC	2 cut(s)	41, 769
PsuI	RGATCY	1 cut(s)	414
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	5 cut(s)	87, 127, 156, 660, 921
RsaNI	GTAC	5 cut(s)	86, 126, 155, 659, 920
SapI	GCTCTTC	1 cut(s)	1146
SaqAI	TTAA	5 cut(s)	140, 716, 947, 1031, 1227
SatI	GCNGC	2 cut(s)	198, 735
Sau3AI	GATC	4 cut(s)	110, 349, 414, 795
Sau96I	GGNCC	2 cut(s)	41, 769
ScaI	AGTACT	1 cut(s)	660
SchI	GAGTC	3 cut(s)	620, 1004, 1045
ScrFI	CCNGG	4 cut(s)	13, 325, 917, 930
SduI	GDGCHC	1 cut(s)	862
SfaNI	GCATC	1 cut(s)	597
SfcI	CTRYAG	2 cut(s)	175, 1005
SmlI	CTYRAG	3 cut(s)	639, 773, 923
SmoI	CTYRAG	3 cut(s)	639, 773, 923
Sse9I	AATT	7 cut(s)	96, 482, 537, 597, 632, 1028, 1105
SsiI	CCGC	3 cut(s)	50, 197, 734
SspMI	CTAG	6 cut(s)	45, 147, 389, 524, 662, 1199
StyD4I	CCNGG	4 cut(s)	11, 323, 915, 928
StyI	CCWWGG	1 cut(s)	1244
TaaI	ACNGT	3 cut(s)	384, 658, 1096
TaiI	ACGT	2 cut(s)	447, 465
TaqI	TCGA	1 cut(s)	983
TasI	AATT	7 cut(s)	96, 482, 537, 597, 632, 1028, 1105
TatI	WGTACW	3 cut(s)	85, 125, 658
TauI	GCSGC	2 cut(s)	200, 737
TfiI	GAWTC	2 cut(s)	134, 1100
Tru1I	TTAA	5 cut(s)	140, 716, 947, 1031, 1227
Tru9I	TTAA	5 cut(s)	140, 716, 947, 1031, 1227
TscAI	CASTG	4 cut(s)	108, 237, 389, 628
TseFI	GTSAC	1 cut(s)	623
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	6 cut(s)	796, 842, 969, 1004, 1086, 1203
TspRI	CASTG	4 cut(s)	108, 237, 389, 628
XapI	RAATTY	2 cut(s)	537, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	6 cut(s)	45, 147, 389, 524, 662, 1199
ZrmI	AGTACT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.