Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004356

Physical Location & Seq

Genomic Coordinates Reverse (-)

59877325 .. 59882315

Gene Structure 4991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGACCAAAAGGTTGATGTTACTAGAAGAAAATCAAATTTCCTTCCACTCTGAGGATGGTTTGATTTTTGATGGTGTCAAGGATTATTCTCGTCAAATTGCCGAGATGCTGGGTTTGAGCAGTGACTCTGAATTTCCTCAAGCTGGTGTTCACACAGTACTAGATATTGGTTGTGGTTTTGGTAGCTTTGGCGCTCATTTAGTATCCCTAAAGTTAATGGCTATTTGTATTGCGGCATATGAGGCAACTGGCAGTCAAGTTCAGTTGGCCCTTGAGAGAGGTCTTCCAGCAATGATCGGCAACTTCATCACAAGACAACTTCCATATCCATCTCTGTCATTTGAAATGGTTCATTGTGCTCAATGTGGTATTCTATGGGACAAAAAAGATGGGATGTTTCTTTTAGAAGTTGACCGGGTACTCAAGCCTGGAGGTTACTTTGTTTTAACCTCACCCACAAGCCAGCCATATAGAAGTTCATCGACTATGAAGGAGGGCATAGCTACAGACTCTTCACCAATGGAAGAATTAACCCAGAAAATCTGTTGGACTCTTTTGGCTCAAAAATATGAAACTTTTATCTGGCAGAAAACTGTGGATTCTAATTGCTATACATCTCGCAAGCAGGGTGCTATTCCACTTTGTCAAGAAGAGCATGAGGTTCAATCATATTATAAGCCCCTAGTATCATGTATAAGTGGGACCATGAGCAAACGCTGGACTCCAATCCGAAATAGGTCTAGTTCCCGGTGGAACTCATCTAAGCTTGAAGTTCATGGAAAAAGTTCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

264

Amino Acids

29.49

Weight (kDa)

6.59

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	8 - 238	6.8e-62	Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_31	PF13847	52 - 162	1.2e-06	Methyltransferase domain
Methyltransf_25	PF13649	53 - 145	1.8e-07	Methyltransferase domain
Methyltransf_11	PF08241	54 - 149	2.2e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT2G03480 AT2G03480 AT2G03480
fragaria_vesca	FvH4_4g30250 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD13G1063700.v1.1 MD16G1062200.v1.1 MD16G1062400.v1.1
prunus_persica	Prupe.1G284100_v2.0.a1 Prupe.1G285100_v2.0.a1
pyrus_communis	pycom13g05630 pycom16g05450
rosa_chinensis	RchiOBHm_Chr4g0438551 RchiOBHm_Chr7g0238621
rosa_laevigata	RLG00000006352
rosa_multiflora	Rmu_sc0002327.1_g000004 Rmu_sc0003812.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379560
rosa_rugosa	Rorug04G0311400
rosa_samantha	Rh4AG361800 Rh4BG373200 Rh4CG387100 Rh4DG367800 Rh4DG367900
rosa_wichuraiana	Rw0G006650 Rw0G016600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	675
AciI	CCGC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	36, 131
AfaI	GTAC	2 cut(s)	159, 420
AfiI	CCNNNNNNNGG	2 cut(s)	52, 143
AgsI	TTSAA	3 cut(s)	344, 665, 770
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	4 cut(s)	143, 186, 503, 766
AluI	AGCT	4 cut(s)	143, 186, 503, 766
Alw21I	GWGCWC	1 cut(s)	361
AoxI	GGCC	1 cut(s)	267
ApoI	RAATTY	2 cut(s)	36, 131
Asp700I	GAANNNNTTC	2 cut(s)	348, 784
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	268, 702
AsuC2I	CCSGG	2 cut(s)	416, 748
AsuHPI	GGTGA	2 cut(s)	444, 507
AvaII	GGWCC	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	361
BccI	CCATC	4 cut(s)	50, 65, 337, 383
BciT130I	CCWGG	1 cut(s)	429
BciVI	GTATCC	1 cut(s)	214
BcnI	CCSGG	2 cut(s)	416, 748
BfaI	CTAG	4 cut(s)	23, 161, 683, 741
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
BmcAI	AGTACT	1 cut(s)	159
Bme1390I	CCNGG	3 cut(s)	416, 429, 748
Bme18I	GGWCC	1 cut(s)	702
BmgT120I	GGNCC	2 cut(s)	268, 702
BmiI	GGNNCC	1 cut(s)	703
BmrFI	CCNGG	3 cut(s)	416, 429, 748
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	3 cut(s)	123, 293, 407
BpuMI	CCSGG	2 cut(s)	416, 748
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 143
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	61, 399
BseLI	CCNNNNNNNGG	2 cut(s)	52, 143
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	415, 748
BslFI	GGGAC	2 cut(s)	392, 715
BslI	CCNNNNNNNGG	2 cut(s)	52, 143
BsmFI	GGGAC	2 cut(s)	392, 715
BsnI	GGCC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	703
BspQI	GCTCTTC	1 cut(s)	645
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	157, 595
Bst6I	CTCTTC	2 cut(s)	517, 645
BstC8I	GCNNGC	2 cut(s)	464, 623
BstDEI	CTNAG	2 cut(s)	51, 762
BstF5I	GGATG	2 cut(s)	61, 399
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	297
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	3 cut(s)	414, 427, 746
BstSFI	CTRYAG	1 cut(s)	504
BstV2I	GAAGAC	1 cut(s)	275
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	61, 399
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	464, 623
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	268, 702
Csp6I	GTAC	2 cut(s)	158, 419
CviAII	CATG	4 cut(s)	656, 690, 706, 776
CviQI	GTAC	2 cut(s)	158, 419
DdeI	CTNAG	2 cut(s)	51, 762
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
Eam1104I	CTCTTC	2 cut(s)	517, 645
EarI	CTCTTC	2 cut(s)	517, 645
Eco47I	GGWCC	1 cut(s)	702
EcoRII	CCWGG	1 cut(s)	427
FaeI	CATG	4 cut(s)	659, 693, 709, 779
FaqI	GGGAC	2 cut(s)	392, 715
FatI	CATG	4 cut(s)	655, 689, 705, 775
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	2 cut(s)	68, 406
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	4 cut(s)	23, 161, 683, 741
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	234
GsaI	CCCAGC	1 cut(s)	113
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	415, 748
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	4 cut(s)	659, 693, 709, 779
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	5 cut(s)	125, 509, 550, 599, 721
HpaII	CCGG	2 cut(s)	415, 748
HphI	GGTGA	2 cut(s)	444, 507
Hpy166II	GTNNAC	2 cut(s)	151, 412
Hpy188I	TCNGA	3 cut(s)	52, 130, 731
Hpy188III	TCNNGA	1 cut(s)	647
Hpy8I	GTNNAC	2 cut(s)	151, 412
HpyAV	CCTTC	2 cut(s)	52, 484
HpyCH4III	ACNGT	2 cut(s)	157, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	2 cut(s)	51, 762
Hsp92II	CATG	4 cut(s)	659, 693, 709, 779
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	294
LguI	GCTCTTC	1 cut(s)	645
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	4 cut(s)	23, 161, 683, 741
MaeIII	GTNAC	3 cut(s)	18, 122, 434
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	5 cut(s)	38, 275, 504, 536, 662
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	5 cut(s)	36, 96, 131, 527, 604
MlyI	GAGTC	4 cut(s)	119, 503, 544, 715
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	8 cut(s)	46, 147, 235, 272, 425, 460, 487, 652
MroXI	GAANNNNTTC	2 cut(s)	348, 784
MseI	TTAA	3 cut(s)	215, 446, 530
MspI	CCGG	2 cut(s)	415, 748
MspR9I	CCNGG	3 cut(s)	416, 429, 748
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	2 cut(s)	416, 748
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	4 cut(s)	659, 693, 709, 779
NlaIV	GGNNCC	1 cut(s)	703
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	645
PdmI	GAANNNNTTC	2 cut(s)	348, 784
PfeI	GAWTC	1 cut(s)	599
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	4 cut(s)	119, 503, 544, 715
PpsI	GAGTC	4 cut(s)	119, 503, 544, 715
PsiI	TTATAA	1 cut(s)	675
Psp6I	CCWGG	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	703
PspPI	GGNCC	2 cut(s)	268, 702
RsaI	GTAC	2 cut(s)	159, 420
RsaNI	GTAC	2 cut(s)	158, 419
SapI	GCTCTTC	1 cut(s)	645
SaqAI	TTAA	3 cut(s)	215, 446, 530
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	2 cut(s)	268, 702
ScaI	AGTACT	1 cut(s)	159
SchI	GAGTC	4 cut(s)	119, 503, 544, 715
ScrFI	CCNGG	3 cut(s)	416, 429, 748
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	702
SmlI	CTYRAG	3 cut(s)	138, 272, 422
SmoI	CTYRAG	3 cut(s)	138, 272, 422
Sse9I	AATT	5 cut(s)	36, 96, 131, 527, 604
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	4 cut(s)	23, 161, 683, 741
StyD4I	CCNGG	3 cut(s)	414, 427, 746
TaaI	ACNGT	2 cut(s)	157, 595
TaqI	TCGA	1 cut(s)	482
TasI	AATT	5 cut(s)	36, 96, 131, 527, 604
TatI	WGTACW	1 cut(s)	157
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	3 cut(s)	215, 446, 530
Tru9I	TTAA	3 cut(s)	215, 446, 530
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	6 cut(s)	295, 341, 468, 503, 585, 764
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	702
XapI	RAATTY	2 cut(s)	36, 131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XmnI	GAANNNNTTC	2 cut(s)	348, 784
XspI	CTAG	4 cut(s)	23, 161, 683, 741
ZrmI	AGTACT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.