Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004356

Physical Location & Seq

Genomic Coordinates Reverse (-)

28582432 .. 28583298

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G284100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGAAGCTCCTGGTCCAATAAACTCCCTCTCATTTTTGGGCCTAGATCGCCACTCAATTGGCTGCTTTTGTGCCTCGTTAGGGTTCTTGCACTAATTCCAGTGTTGGGATCATCCTCTTCAAATACATTTGACTCTCTAACTCCTACTTCAGTACCCGACATCTATACAAACTATAGGAGGCTAAACTTGGCCTTTGTGGCAGAGAAAGAAAATTATGTGCCTTGTTACAATGTTTCAGCAAACCTTTTTGTGGGGTTTAAAGATAGGGAGGAGTTTGATTGGCATTGTGAAGTATCAAGAAACAGAGAACGGTGTCTGGTTCGCCCTCCTAAGGACTATAAGATTCCCCGGAGGTGGCCAGCTGGTAGGGATGTGATATGGAGTGGAAACGTGAAGATAACCAAAGACCAATTTCTTTCGTCTGGGAGCATGACCAAAAGGTTGATGTTACTAGAAGAAAATCAAATTGCCTTTCACTCTGAGGATGGTTTGATTTTGTATGTTGTCGAGGATTATTCTCTTCAAATTGCGAAGATGCTAGGTTTAAATGATGATTCTCAATTTCTTCAAGCCGGTGTAAGCCTTCTTTGTGAGTTACAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

203

Amino Acids

23.18

Weight (kDa)

7.6

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT2G03480 AT2G03480 AT2G03480
fragaria_vesca	FvH4_4g30250 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD13G1063700.v1.1 MD16G1062200.v1.1 MD16G1062400.v1.1
prunus_persica	Prupe.1G284100_v2.0.a1 Prupe.1G285100_v2.0.a1
pyrus_communis	pycom13g05630 pycom16g05450
rosa_chinensis	RchiOBHm_Chr4g0438551 RchiOBHm_Chr7g0238621
rosa_laevigata	RLG00000006352
rosa_multiflora	Rmu_sc0002327.1_g000004 Rmu_sc0003812.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379560
rosa_rugosa	Rorug04G0311400
rosa_samantha	Rh4AG361800 Rh4BG373200 Rh4CG387100 Rh4DG367800 Rh4DG367900
rosa_wichuraiana	Rw0G006650 Rw0G016600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	5 cut(s)	82, 107, 253, 334, 357
AgsI	TTSAA	3 cut(s)	123, 527, 572
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	9, 365
AluI	AGCT	2 cut(s)	9, 365
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	3 cut(s)	41, 192, 359
ApeKI	GCWGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	15, 41
AsuC2I	CCSGG	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	15
AxyI	CCTNAGG	1 cut(s)	333
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BalI	TGGCCA	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	1 cut(s)	482
BciT130I	CCWGG	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	352
BfaI	CTAG	3 cut(s)	45, 455, 542
BfmI	CTRYAG	1 cut(s)	175
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	13, 352
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	15, 41
BmrFI	CCNGG	2 cut(s)	13, 352
BmsI	GCATC	1 cut(s)	528
BpuMI	CCSGG	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 107, 253, 334, 357
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	1 cut(s)	101
Bse21I	CCTNAGG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	3 cut(s)	113, 379, 493
BseLI	CCNNNNNNNGG	5 cut(s)	82, 107, 253, 334, 357
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	51
BshFI	GGCC	3 cut(s)	43, 194, 361
BsiSI	CCGG	2 cut(s)	352, 576
BslI	CCNNNNNNNGG	5 cut(s)	82, 107, 253, 334, 357
BsnI	GGCC	3 cut(s)	43, 194, 361
Bsp143I	GATC	2 cut(s)	47, 110
BspANI	GGCC	3 cut(s)	43, 194, 361
BspCNI	CTCAG	1 cut(s)	475
BspPI	GGATC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	575
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	2 cut(s)	47, 110
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	315, 603
Bst6I	CTCTTC	2 cut(s)	124, 528
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	333, 483
BstF5I	GGATG	3 cut(s)	113, 379, 493
BstKTI	GATC	2 cut(s)	50, 113
BstMBI	GATC	2 cut(s)	47, 110
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 200
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	11, 350
BstSFI	CTRYAG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	333
BsuRI	GGCC	3 cut(s)	43, 194, 361
BtsCI	GGATG	3 cut(s)	113, 379, 493
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	363
Cfr10I	RCCGGY	1 cut(s)	575
Cfr13I	GGNCC	2 cut(s)	15, 41
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	1 cut(s)	433
CviJI	RGCY	9 cut(s)	9, 43, 64, 184, 194, 361, 365, 575, 585
CviKI_1	RGCY	9 cut(s)	9, 43, 64, 184, 194, 361, 365, 575, 585
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	2 cut(s)	333, 483
DpnI	GATC	2 cut(s)	49, 112
DpnII	GATC	2 cut(s)	47, 110
DraI	TTTAAA	2 cut(s)	262, 549
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	2 cut(s)	124, 528
EarI	CTCTTC	2 cut(s)	124, 528
Eco47I	GGWCC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	11
FaeI	CATG	1 cut(s)	436
FaiI	YATR	8 cut(s)	168, 177, 219, 342, 382, 434, 504, 607
FatI	CATG	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	3 cut(s)	100, 386, 500
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	3 cut(s)	45, 455, 542
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	43, 194, 361
HapII	CCGG	2 cut(s)	352, 576
Hin1II	CATG	1 cut(s)	436
HinfI	GANTC	3 cut(s)	134, 346, 557
HpaII	CCGG	2 cut(s)	352, 576
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	596
HpyCH4III	ACNGT	2 cut(s)	315, 603
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 200
HpyF3I	CTNAG	2 cut(s)	333, 483
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	47, 110
LmnI	GCTCC	2 cut(s)	14, 429
LpnPI	CCDG	8 cut(s)	25, 114, 305, 351, 365, 375, 411, 589
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	3 cut(s)	45, 455, 542
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	3 cut(s)	227, 450, 597
MalI	GATC	2 cut(s)	49, 112
MboI	GATC	2 cut(s)	47, 110
MboII	GAAGA	6 cut(s)	111, 409, 470, 515, 547, 560
MfeI	CAATTG	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	7 cut(s)	58, 96, 214, 413, 468, 528, 563
MluNI	TGGCCA	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	9 cut(s)	39, 86, 127, 174, 265, 339, 348, 478, 505
Mox20I	TGGCCA	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	2 cut(s)	261, 548
Msp20I	TGGCCA	1 cut(s)	361
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	2 cut(s)	352, 576
MspR9I	CCNGG	2 cut(s)	13, 352
MunI	CAATTG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	49, 200
NciI	CCSGG	1 cut(s)	352
NdeII	GATC	2 cut(s)	47, 110
NlaIII	CATG	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	346, 557
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	15, 41
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	261, 548
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	47, 110
Sau96I	GGNCC	2 cut(s)	15, 41
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	13, 352
SetI	ASST	7 cut(s)	11, 249, 359, 367, 396, 446, 547
SfaNI	GCATC	1 cut(s)	528
SfcI	CTRYAG	1 cut(s)	175
SinI	GGWCC	1 cut(s)	15
Sse9I	AATT	7 cut(s)	58, 96, 214, 413, 468, 528, 563
SspMI	CTAG	3 cut(s)	45, 455, 542
StyD4I	CCNGG	2 cut(s)	11, 350
TaaI	ACNGT	2 cut(s)	315, 603
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	510
TasI	AATT	7 cut(s)	58, 96, 214, 413, 468, 528, 563
TfiI	GAWTC	2 cut(s)	346, 557
Tru1I	TTAA	2 cut(s)	261, 548
Tru9I	TTAA	2 cut(s)	261, 548
TscAI	CASTG	1 cut(s)	108
TseI	GCWGC	1 cut(s)	64
TspRI	CASTG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	15
XspI	CTAG	3 cut(s)	45, 455, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.