Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004356

Physical Location & Seq

Genomic Coordinates Reverse (-)

48697848 .. 48698450

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0311400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCCCATAACTGTCCACCAAACAGGGCATGAATCTGATTTGCGCACCCAGGTTGGTTTGGGCTTTCCACTGGGTCACCCAAATGATTTGGACCCTCGTCCAGAAGAGGGCAACCCCTCATCGTCGACCATGATGGCCTCTGCTTCCAAAACAGCCCCTGTTGCCGTCAAGATCTTCGGCCGGCGCACATGTCCAGCCTCCGCATCACCAGTAGCTAACCATCAGGCCGCTGCTCCGCTGTTCCAACTGCCCTCAGGTCGAAGCTCCAACCTTATAGGTCGAAACACCAGATTCGCTCCGCATTGGACCCTGGACTTCCTTGACCGATTGAATTCCCAACCAAGGTGGCTAGGGTTGCCGACAATCCACTTCAAACCCAGTTCGACACTGGCTTTAGACGTCAAAATTACAGTCACGCCCGTCACAACGTCAGTAGCTTTAAGCTGTGCTCTGCTTGGCCTGATTCAACCCCAATCAATTGAAAAATCCCTATCTGCAATCTCATATCAGAAAGCATCAAGGCTCCCCAATGATTTTCCATACGAGTTGTCAGTACCCGTAAGTCTAAGATTCACATCGTTTGGTGAGCAGAAGATCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

200

Amino Acids

21.64

Weight (kDa)

9.34

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT2G03480 AT2G03480 AT2G03480
fragaria_vesca	FvH4_4g30250 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD13G1063700.v1.1 MD16G1062200.v1.1 MD16G1062400.v1.1
prunus_persica	Prupe.1G284100_v2.0.a1 Prupe.1G285100_v2.0.a1
pyrus_communis	pycom13g05630 pycom16g05450
rosa_chinensis	RchiOBHm_Chr4g0438551 RchiOBHm_Chr7g0238621
rosa_laevigata	RLG00000006352
rosa_multiflora	Rmu_sc0002327.1_g000004 Rmu_sc0003812.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379560
rosa_rugosa	Rorug04G0311400
rosa_samantha	Rh4AG361800 Rh4BG373200 Rh4CG387100 Rh4DG367800 Rh4DG367900
rosa_wichuraiana	Rw0G006650 Rw0G016600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	402
Acc16I	TGCGCA	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	125
AciI	CCGC	4 cut(s)	201, 228, 236, 299
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	331
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	1 cut(s)	555
AfiI	CCNNNNNNNGG	2 cut(s)	107, 342
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	331, 373, 467, 482
AjnI	CCWGG	2 cut(s)	48, 309
AluBI	AGCT	4 cut(s)	215, 264, 437, 444
AluI	AGCT	4 cut(s)	215, 264, 437, 444
Alw21I	GWGCWC	1 cut(s)	451
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	4 cut(s)	135, 178, 225, 457
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	331
ArsI	GACNNNNNNTTYG	2 cut(s)	396, 428
AspLEI	GCGC	2 cut(s)	45, 186
AspS9I	GGNCC	2 cut(s)	91, 306
AsuHPI	GGTGA	3 cut(s)	68, 198, 596
AvaII	GGWCC	2 cut(s)	91, 306
AxyI	CCTNAGG	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	127, 228
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	50, 311
BfaI	CTAG	1 cut(s)	350
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	2 cut(s)	228, 231
BlsI	GCNGC	2 cut(s)	229, 232
Bme1390I	CCNGG	2 cut(s)	50, 311
Bme18I	GGWCC	2 cut(s)	91, 306
BmgT120I	GGNCC	2 cut(s)	91, 306
BmiI	GGNNCC	3 cut(s)	93, 308, 524
BmrFI	CCNGG	2 cut(s)	50, 311
BmrI	ACTGGG	2 cut(s)	80, 372
BmsI	GCATC	2 cut(s)	212, 524
BmuI	ACTGGG	2 cut(s)	80, 372
BoxI	GACNNNNGTC	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	574
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	3 cut(s)	48, 309, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 342
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	4 cut(s)	75, 209, 378, 393
Bse21I	CCTNAGG	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	574
BseBI	CCWGG	2 cut(s)	50, 311
BseDI	CCNNGG	3 cut(s)	48, 309, 341
BseJI	GATNNNNATC	1 cut(s)	574
BseLI	CCNNNNNNNGG	2 cut(s)	107, 342
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	4 cut(s)	75, 209, 378, 393
BseX3I	CGGCCG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	217
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	4 cut(s)	137, 180, 227, 459
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	2 cut(s)	107, 342
BsnI	GGCC	4 cut(s)	137, 180, 227, 459
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	171, 594
BspACI	CCGC	4 cut(s)	201, 228, 236, 299
BspANI	GGCC	4 cut(s)	137, 180, 227, 459
BspCNI	CTCAG	1 cut(s)	266
BspLI	GGNNCC	3 cut(s)	93, 308, 524
BsrFI	RCCGGY	1 cut(s)	180
BsrI	ACTGG	4 cut(s)	75, 209, 378, 393
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	3 cut(s)	48, 309, 341
BssMI	GATC	2 cut(s)	171, 594
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	2 cut(s)	50, 311
Bst4CI	ACNGT	2 cut(s)	13, 412
Bst6I	CTCTTC	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	253, 566
BstEII	GGTNACC	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	45, 186
BstKTI	GATC	2 cut(s)	174, 597
BstMBI	GATC	2 cut(s)	171, 594
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 355
BstNI	CCWGG	2 cut(s)	50, 311
BstNSI	RCATGY	1 cut(s)	192
BstPAI	GACNNNNGTC	1 cut(s)	96
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	48, 309
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BstZI	CGGCCG	1 cut(s)	178
Bsu36I	CCTNAGG	1 cut(s)	253
BsuRI	GGCC	4 cut(s)	137, 180, 227, 459
BtsIMutI	CAGTG	2 cut(s)	68, 386
Cac8I	GCNNGC	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	2 cut(s)	45, 186
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	91, 306
Csp6I	GTAC	1 cut(s)	554
CspCI	CAANNNNNGTGG	2 cut(s)	326, 361
CviAII	CATG	3 cut(s)	29, 130, 189
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	2 cut(s)	253, 566
DpnI	GATC	2 cut(s)	173, 596
DpnII	GATC	2 cut(s)	171, 594
EaeI	YGGCCR	1 cut(s)	178
EagI	CGGCCG	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EclXI	CGGCCG	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	341
Eco47I	GGWCC	2 cut(s)	91, 306
Eco52I	CGGCCG	1 cut(s)	178
Eco81I	CCTNAGG	1 cut(s)	253
Eco91I	GGTNACC	1 cut(s)	74
EcoO65I	GGTNACC	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	48, 309
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	3 cut(s)	32, 133, 192
FaiI	YATR	7 cut(s)	8, 30, 131, 190, 275, 505, 541
FatI	CATG	3 cut(s)	28, 129, 188
FblI	GTMKAC	1 cut(s)	125
Fnu4HI	GCNGC	2 cut(s)	228, 231
Fsp4HI	GCNGC	2 cut(s)	228, 231
FspBI	CTAG	1 cut(s)	350
FspI	TGCGCA	1 cut(s)	44
GlaI	GCGC	2 cut(s)	44, 185
GluI	GCNGC	2 cut(s)	228, 231
HaeIII	GGCC	4 cut(s)	137, 180, 227, 459
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	2 cut(s)	45, 186
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	3 cut(s)	32, 133, 192
Hin6I	GCGC	2 cut(s)	43, 184
HinP1I	GCGC	2 cut(s)	43, 184
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	4 cut(s)	32, 291, 463, 570
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	3 cut(s)	68, 198, 596
Hpy166II	GTNNAC	2 cut(s)	16, 126
Hpy188I	TCNGA	2 cut(s)	37, 510
Hpy188III	TCNNGA	2 cut(s)	101, 169
Hpy8I	GTNNAC	2 cut(s)	16, 126
Hpy99I	CGWCG	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	13, 412
HpyCH4IV	ACGT	2 cut(s)	399, 428
HpyCH4V	TGCA	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 355
HpyF3I	CTNAG	2 cut(s)	253, 566
HpySE526I	ACGT	2 cut(s)	399, 428
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	32, 133, 192
HspAI	GCGC	2 cut(s)	43, 184
KroI	GCCGGC	1 cut(s)	180
KroNI	GCCGGC	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	171, 594
LmnI	GCTCC	4 cut(s)	238, 269, 301, 528
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	2 cut(s)	212, 524
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	2 cut(s)	399, 428
MaeIII	GTNAC	3 cut(s)	74, 412, 421
MalI	GATC	2 cut(s)	173, 596
MboI	GATC	2 cut(s)	171, 594
MboII	GAAGA	2 cut(s)	116, 166
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	3 cut(s)	331, 405, 477
MmeI	TCCRAC	2 cut(s)	268, 291
MnlI	CCTC	6 cut(s)	100, 105, 127, 148, 208, 262
MroNI	GCCGGC	1 cut(s)	180
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	2 cut(s)	230, 238
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	50, 311
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	2 cut(s)	50, 311
MwoI	GCNNNNNNNGC	2 cut(s)	161, 355
NaeI	GCCGGC	1 cut(s)	182
NdeII	GATC	2 cut(s)	171, 594
NgoMIV	GCCGGC	1 cut(s)	180
NlaIII	CATG	3 cut(s)	32, 133, 192
NlaIV	GGNNCC	3 cut(s)	93, 308, 524
NmuCI	GTSAC	3 cut(s)	74, 412, 421
NsbI	TGCGCA	1 cut(s)	44
NspI	RCATGY	1 cut(s)	192
PciI	ACATGT	1 cut(s)	188
PdiI	GCCGGC	1 cut(s)	182
PfeI	GAWTC	4 cut(s)	32, 291, 463, 570
PkrI	GCNGC	2 cut(s)	229, 232
PscI	ACATGT	1 cut(s)	188
PshAI	GACNNNNGTC	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	48, 309
PspEI	GGTNACC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	48, 309
PspN4I	GGNNCC	3 cut(s)	93, 308, 524
PspPI	GGNCC	2 cut(s)	91, 306
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	171
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	81
SalI	GTCGAC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	2 cut(s)	228, 231
Sau3AI	GATC	2 cut(s)	171, 594
Sau96I	GGNCC	2 cut(s)	91, 306
ScrFI	CCNGG	2 cut(s)	50, 311
SduI	GDGCHC	1 cut(s)	451
SfaNI	GCATC	2 cut(s)	212, 524
SinI	GGWCC	2 cut(s)	91, 306
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	3 cut(s)	331, 405, 477
SsiI	CCGC	4 cut(s)	201, 228, 236, 299
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	48, 309
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	13, 412
TaiI	ACGT	2 cut(s)	402, 431
TaqI	TCGA	5 cut(s)	125, 259, 280, 383, 597
TaqII	GACCGA	1 cut(s)	339
TasI	AATT	3 cut(s)	331, 405, 477
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	4 cut(s)	32, 291, 463, 570
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	2 cut(s)	75, 393
TseFI	GTSAC	3 cut(s)	74, 412, 421
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	3 cut(s)	74, 412, 421
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	2 cut(s)	75, 393
VpaK11BI	GGWCC	2 cut(s)	91, 306
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	125
XspI	CTAG	1 cut(s)	350
ZraI	GACGTC	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.