Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004356

Physical Location & Seq

Genomic Coordinates Reverse (-)

58740511 .. 58741564

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG367800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATACGCAATGTGCTCGACATGAGTGCTCATTATGGGGGTTTAAATGCTGCTTTTCTGGAGGAAAAGAAATCAGTCTGGGTGATGAATGTTGTGCCTGTTAATGCTCCCTATACACTTCCTCTCATACTAGATCAAGGTTTTGCTGGTGTTTTGCATGACTGGTGCGAACCATTCCCAACATATCCTCGAACATATGATCTGCTGCATGCAAATGGGCTGCTCTCACACCTGTCTTCAGAGAGGTGCAGCATGATGGACTTATTCTTGGAGATGGACCGGATTCTGCGCCCTGAGGGCTGGGTTGTTCTCTGTGATAAAGTGGGAGCTATAGAGATGGCACGCATGTTTGCTACCCAAGTACGTTGGGAAGCAAGGGTGATTGACCCTCAGAATGGCAGTGACCAGAGACTACTTGTATGCCAAAAACCATTTGTGAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

148

Amino Acids

16.92

Weight (kDa)

6.06

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	2 - 143	7.1e-52	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT2G03480 AT2G03480 AT2G03480
fragaria_vesca	FvH4_4g30250 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD13G1063700.v1.1 MD16G1062200.v1.1 MD16G1062400.v1.1
prunus_persica	Prupe.1G284100_v2.0.a1 Prupe.1G285100_v2.0.a1
pyrus_communis	pycom13g05630 pycom16g05450
rosa_chinensis	RchiOBHm_Chr4g0438551 RchiOBHm_Chr7g0238621
rosa_laevigata	RLG00000006352
rosa_multiflora	Rmu_sc0002327.1_g000004 Rmu_sc0003812.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379560
rosa_rugosa	Rorug04G0311400
rosa_samantha	Rh4AG361800 Rh4BG373200 Rh4CG387100 Rh4DG367800 Rh4DG367900
rosa_wichuraiana	Rw0G006650 Rw0G016600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	395
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw21I	GWGCWC	2 cut(s)	18, 31
Alw26I	GTCTC	1 cut(s)	403
ApeKI	GCWGC	4 cut(s)	50, 205, 220, 249
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	94, 391
AvaII	GGWCC	1 cut(s)	277
AxyI	CCTNAGG	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	18, 31
BbvI	GCAGC	4 cut(s)	37, 192, 207, 261
BccI	CCATC	3 cut(s)	250, 268, 331
BcgI	CGANNNNNNTGC	3 cut(s)	8, 32, 42
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	297
BisI	GCNGC	4 cut(s)	51, 206, 221, 250
BlsI	GCNGC	4 cut(s)	52, 207, 222, 251
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	285, 404
BseNI	ACTGG	1 cut(s)	167
BseXI	GCAGC	4 cut(s)	37, 192, 207, 261
BseYI	CCCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	18, 31
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	403
Bsp1286I	GDGCHC	2 cut(s)	18, 31
Bsp143I	GATC	2 cut(s)	133, 199
BspCNI	CTCAG	2 cut(s)	286, 403
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	133, 199
BstC8I	GCNNGC	2 cut(s)	210, 343
BstDEI	CTNAG	2 cut(s)	294, 390
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	2 cut(s)	136, 202
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	2 cut(s)	133, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNSI	RCATGY	2 cut(s)	212, 349
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	37, 192, 207, 261
BstV2I	GAAGAC	1 cut(s)	228
Bsu36I	CCTNAGG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	210, 343
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	5 cut(s)	22, 158, 209, 253, 346
CviJI	RGCY	3 cut(s)	220, 300, 329
CviKI_1	RGCY	3 cut(s)	220, 300, 329
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	2 cut(s)	294, 390
DpnI	GATC	2 cut(s)	135, 201
DpnII	GATC	2 cut(s)	133, 199
DraI	TTTAAA	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	294
FaeI	CATG	5 cut(s)	25, 161, 212, 256, 349
FatI	CATG	5 cut(s)	21, 157, 208, 252, 345
FauNDI	CATATG	1 cut(s)	196
Fnu4HI	GCNGC	4 cut(s)	51, 206, 221, 250
Fsp4HI	GCNGC	4 cut(s)	51, 206, 221, 250
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	4 cut(s)	51, 206, 221, 250
GsaI	CCCAGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	80
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	5 cut(s)	25, 161, 212, 256, 349
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	94, 391
Hpy188I	TCNGA	2 cut(s)	241, 393
Hpy188III	TCNNGA	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	4 cut(s)	157, 208, 212, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	2 cut(s)	294, 390
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	5 cut(s)	25, 161, 212, 256, 349
HspAI	GCGC	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	133, 199
LmnI	GCTCC	2 cut(s)	112, 326
Lsp1109I	GCAGC	4 cut(s)	37, 192, 207, 261
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	135, 201
MboI	GATC	2 cut(s)	133, 199
MboII	GAAGA	1 cut(s)	228
MhlI	GDGCHC	2 cut(s)	18, 31
MnlI	CCTC	6 cut(s)	55, 132, 198, 237, 289, 399
MseI	TTAA	2 cut(s)	44, 102
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	297
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	2 cut(s)	133, 199
NlaIII	CATG	5 cut(s)	25, 161, 212, 256, 349
NmuCI	GTSAC	1 cut(s)	401
NspI	RCATGY	2 cut(s)	212, 349
PaeI	GCATGC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	4 cut(s)	52, 207, 222, 251
PspFI	CCCAGC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	44, 102
SatI	GCNGC	4 cut(s)	51, 206, 221, 250
Sau3AI	GATC	2 cut(s)	133, 199
Sau96I	GGNCC	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	18, 31
SetI	ASST	5 cut(s)	142, 234, 248, 331, 367
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	213
SphI	GCATGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	131
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	18, 190
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	2 cut(s)	44, 102
Tru9I	TTAA	2 cut(s)	44, 102
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	4 cut(s)	50, 205, 220, 249
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	277
XceI	RCATGY	2 cut(s)	212, 349
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.