pycom13g05630

Methyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
3706902 .. 3709051
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g05630.1

Sequence Viewer

Length: 1293 bp
ATGAGAAGCTCCTGGTTCAGTAAACTCTCCCTCATTTTAGGCCCTAGACCGCCACTCAATTGGTTACTCTTGTGTGGTGTTATTGTACTTGCACTAATTGCAGTGCTGGGATCATCTTCTTCAAATACATTTGACTCTTTAACTCCCACTTCGGTACCCAACATATATACAAACTATAGGAGGCTAAAGGAGCAAGCGGCGGTTGATTATCTGGAGCTGCGGTCTCTCTCACTGGGGACTAGTCGACAAAGAGAGCTTGGCCTTTGTGGCAAAGAAAGAGAAAATCATGTGCCTTGTTACAATGTTTCAGCAAACGTTTTAGCTGGGTTTAAAGATGGGGAGGAGTTTGATCGACATTGTGAAGTATCAAGAAACAGAGAACGGTGTCTGGTTCGCCCTCCTAAGGATTATAAGATCCCCTTGAGGTGGCCAGCTGGTAGGGATGTGATATGGAGTGCAAACGTGAAGATAACCAAAGACCAATTTCTTTCATCTGGAAGCATGACCAAAAGGTTGATGCTGCTAGAAGAAAATCAAATTGCCTTTCACTCTGAGGATGGTCTGATTTTTGATGGTGTCAAGGATTATTCTCTTCAAATTGCGAAGATGTTAGGTTTGAAAAGTGACTCTGACTTTCTTCAAGCCGGTGTGCAAACTGTACTGGATATTGGTTGCGGTTTTGGTAGTTTTGGAGCTCATTTAGTATCACTGAATGTAATGGCTATTTGTATTGCGGCATATGAGGCAACTGGCAGTCAAGTTCAGTTGACCCTTGAGAGAGGTCTTCCAGCAATGATTGGCAACTTCATTACAAGACAGCTTCCATATCCAGCATTGTCGTTTGAAATGGTTCATTGTGCTCAATGCGGTATTGTTTGGGACAAAAAAGATTGGATGTTGCTTTTAGAAGTTGACCGGGTACTCAAGCCCGGAGGCTACTTTGTTTTAACGTCATCGACAAGCCAACCATATGGAAATTCGTTGAGCATGAAGAATAGCATGGTCACAACAATGGAGGAATTGACCACGAAAGTCTGTTGGACTCTAAAAGCTCAGCAATATGAAACTTATATCTGGCAGAAAACTCTGGATTCTGATTGCTATACATCTCGCAAGCAGGGTGCTCTACCAGTTTGTAATGAAGGGCATGACGTTCGATCATATTATAAGCCTCTCGTATCATGTATAAGTGGGACCACCAGCAAACGCTGGGCTCCAATCCGAAATAGGTCCTCTAGTCCTCATCGATTGAGCTCAGCTGAGATTGAAGTTCATGGAAAGAGTTCAACCTGA

Protein Analysis

431

Amino Acids

48.05

Weight (kDa)

8.69

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 95 - 421 1.4e-77 Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_25 PF13649 220 - 312 5.8e-07 Methyltransferase domain
Methyltransf_11 PF08241 221 - 316 4.4e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 411, 1167
Acc65I GGTACC 1 cut(s) 154
AccB1I GGYRCC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 244
AciI CCGC 7 cut(s) 50, 197, 200, 220, 675, 734, 867
AclI AACGTT 1 cut(s) 315
AclWI GGATC 2 cut(s) 118, 409
AcoI YGGCCR 1 cut(s) 428
AcsI RAATTY 1 cut(s) 976
AfaI GTAC 4 cut(s) 87, 156, 660, 921
AfiI CCNNNNNNNGG 2 cut(s) 403, 426
AgsI TTSAA 7 cut(s) 123, 596, 619, 641, 845, 1268, 1287
AhlI ACTAGT 1 cut(s) 239
AjnI CCWGG 1 cut(s) 11
Alw21I GWGCWC 4 cut(s) 697, 862, 1126, 1256
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 2 cut(s) 118, 409
AoxI GGCC 3 cut(s) 40, 259, 428
ApeKI GCWGC 2 cut(s) 217, 520
ApoI RAATTY 1 cut(s) 976
Asp700I GAANNNNTTC 2 cut(s) 849, 1282
Asp718I GGTACC 1 cut(s) 154
AspS9I GGNCC 3 cut(s) 41, 1194, 1230
AsuC2I CCSGG 2 cut(s) 917, 930
AvaII GGWCC 2 cut(s) 1194, 1230
AxyI CCTNAGG 1 cut(s) 402
BaeI ACNNNNGTAYC 2 cut(s) 138, 171
BalI TGGCCA 1 cut(s) 430
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 3 cut(s) 697, 1216, 1256
BbsI GAAGAC 1 cut(s) 776
Bbv12I GWGCWC 4 cut(s) 697, 862, 1126, 1256
BbvI GCAGC 2 cut(s) 204, 507
BccI CCATC 3 cut(s) 329, 551, 566
BcgI CGANNNNNNTGC 2 cut(s) 1136, 1170
BciT130I CCWGG 1 cut(s) 13
BcnI CCSGG 2 cut(s) 917, 930
BcoDI GTCTC 1 cut(s) 228
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 4 cut(s) 45, 240, 524, 1236
BfmI CTRYAG 1 cut(s) 175
BglI GCCNNNNNGGC 1 cut(s) 267
BisI GCNGC 4 cut(s) 198, 218, 521, 735
BlpI GCTNAGC 2 cut(s) 1053, 1255
BlsI GCNGC 4 cut(s) 199, 219, 522, 736
Bme1390I CCNGG 3 cut(s) 13, 917, 930
Bme18I GGWCC 2 cut(s) 1194, 1230
BmgT120I GGNCC 3 cut(s) 41, 1194, 1230
BmiI GGNNCC 3 cut(s) 156, 1195, 1215
BmrFI CCNGG 3 cut(s) 13, 917, 930
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 776
BpmI CTGGAG 1 cut(s) 233
Bpu1102I GCTNAGC 2 cut(s) 1053, 1255
BpuEI CTTGAG 3 cut(s) 442, 794, 908
BpuMI CCSGG 2 cut(s) 917, 930
Bsa29I ATCGAT 1 cut(s) 1246
BsaI GGTCTC 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 426
Bse118I RCCGGY 1 cut(s) 644
Bse1I ACTGG 4 cut(s) 237, 666, 754, 1130
Bse21I CCTNAGG 1 cut(s) 402
Bse3DI GCAATG 1 cut(s) 798
BseBI CCWGG 1 cut(s) 13
BseCI ATCGAT 1 cut(s) 1246
BseGI GGATG 3 cut(s) 448, 562, 900
BseLI CCNNNNNNNGG 2 cut(s) 403, 426
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 4 cut(s) 543, 1067, 1251, 1269
BseNI ACTGG 4 cut(s) 237, 666, 754, 1130
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 204, 507
BseYI CCCAGC 3 cut(s) 106, 323, 1209
BshFI GGCC 3 cut(s) 42, 261, 430
BshNI GGYRCC 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 1246
BsiHKAI GWGCWC 4 cut(s) 697, 862, 1126, 1256
BsiSI CCGG 3 cut(s) 645, 916, 930
BslFI GGGAC 3 cut(s) 250, 893, 1207
BslI CCNNNNNNNGG 2 cut(s) 403, 426
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 3 cut(s) 250, 893, 1207
BsnI GGCC 3 cut(s) 42, 261, 430
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 5 cut(s) 697, 862, 1126, 1216, 1256
Bsp143I GATC 4 cut(s) 110, 349, 414, 1157
Bsp1720I GCTNAGC 2 cut(s) 1053, 1255
BspACI CCGC 7 cut(s) 50, 197, 200, 220, 675, 734, 867
BspANI GGCC 3 cut(s) 42, 261, 430
BspCNI CTCAG 4 cut(s) 544, 1066, 1252, 1268
BspDI ATCGAT 1 cut(s) 1246
BspLI GGNNCC 3 cut(s) 156, 1195, 1215
BspPI GGATC 2 cut(s) 118, 409
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 798
BsrFI RCCGGY 1 cut(s) 644
BsrI ACTGG 4 cut(s) 237, 666, 754, 1130
BssAI RCCGGY 1 cut(s) 644
BssMI GATC 4 cut(s) 110, 349, 414, 1157
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 384, 658
Bst6I CTCTTC 1 cut(s) 597
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 3 cut(s) 195, 432, 1115
BstDEI CTNAG 5 cut(s) 402, 552, 1053, 1255, 1260
BstF5I GGATG 3 cut(s) 448, 562, 900
BstKTI GATC 4 cut(s) 113, 352, 417, 1160
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 4 cut(s) 110, 349, 414, 1157
BstMWI GCNNNNNNNGC 4 cut(s) 98, 190, 267, 743
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 3 cut(s) 11, 915, 928
BstSFI CTRYAG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 204, 507
BstV2I GAAGAC 1 cut(s) 776
BstX2I RGATCY 1 cut(s) 414
BstXI CCANNNNNNTGG 2 cut(s) 60, 971
BstYI RGATCY 1 cut(s) 414
Bsu15I ATCGAT 1 cut(s) 1246
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 3 cut(s) 42, 261, 430
BsuTUI ATCGAT 1 cut(s) 1246
BtsCI GGATG 3 cut(s) 448, 562, 900
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 3 cut(s) 108, 230, 707
Cac8I GCNNGC 3 cut(s) 195, 432, 1115
Cfr10I RCCGGY 1 cut(s) 644
Cfr13I GGNCC 3 cut(s) 41, 1194, 1230
ClaI ATCGAT 1 cut(s) 1246
Csp6I GTAC 4 cut(s) 86, 155, 659, 920
CviAII CATG 7 cut(s) 287, 502, 988, 1000, 1148, 1182, 1274
CviQI GTAC 4 cut(s) 86, 155, 659, 920
DdeI CTNAG 5 cut(s) 402, 552, 1053, 1255, 1260
DpnI GATC 4 cut(s) 112, 351, 416, 1159
DpnII GATC 4 cut(s) 110, 349, 414, 1157
DraI TTTAAA 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Ecl136II GAGCTC 2 cut(s) 695, 1254
Eco24I GRGCYC 3 cut(s) 697, 1216, 1256
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 1194, 1230
Eco53kI GAGCTC 2 cut(s) 695, 1254
Eco81I CCTNAGG 1 cut(s) 402
EcoICRI GAGCTC 2 cut(s) 695, 1254
EcoO109I RGGNCCY 2 cut(s) 41, 1230
EcoRII CCWGG 1 cut(s) 11
EcoT38I GRGCYC 3 cut(s) 697, 1216, 1256
FaeI CATG 7 cut(s) 290, 505, 991, 1003, 1151, 1185, 1277
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 3 cut(s) 250, 893, 1207
FatI CATG 7 cut(s) 286, 501, 987, 999, 1147, 1181, 1273
FauNDI CATATG 2 cut(s) 739, 970
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 4 cut(s) 198, 218, 521, 735
FokI GGATG 3 cut(s) 455, 569, 907
FriOI GRGCYC 3 cut(s) 697, 1216, 1256
Fsp4HI GCNGC 4 cut(s) 198, 218, 521, 735
FspBI CTAG 4 cut(s) 45, 240, 524, 1236
GluI GCNGC 4 cut(s) 198, 218, 521, 735
GsaI CCCAGC 3 cut(s) 110, 327, 1213
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 3 cut(s) 42, 261, 430
HapII CCGG 3 cut(s) 645, 916, 930
Hin1II CATG 7 cut(s) 290, 505, 991, 1003, 1151, 1185, 1277
HincII GTYRAC 3 cut(s) 245, 768, 913
HindII GTYRAC 3 cut(s) 245, 768, 913
HinfI GANTC 4 cut(s) 134, 626, 1042, 1091
HpaII CCGG 3 cut(s) 645, 916, 930
Hpy166II GTNNAC 4 cut(s) 23, 245, 768, 913
Hpy188I TCNGA 5 cut(s) 553, 564, 631, 1096, 1223
Hpy188III TCNNGA 4 cut(s) 212, 369, 495, 1088
Hpy8I GTNNAC 4 cut(s) 23, 245, 768, 913
HpyAV CCTTC 1 cut(s) 1136
HpyCH4III ACNGT 2 cut(s) 384, 658
HpyCH4IV ACGT 4 cut(s) 315, 462, 950, 1152
HpyCH4V TGCA 4 cut(s) 92, 101, 458, 652
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 190, 267, 743
HpyF3I CTNAG 5 cut(s) 402, 552, 1053, 1255, 1260
HpySE526I ACGT 4 cut(s) 315, 462, 950, 1152
Hsp92II CATG 7 cut(s) 290, 505, 991, 1003, 1151, 1185, 1277
KpnI GGTACC 1 cut(s) 158
Kzo9I GATC 4 cut(s) 110, 349, 414, 1157
LmnI GCTCC 5 cut(s) 14, 190, 214, 692, 1219
Lsp1109I GCAGC 2 cut(s) 204, 507
LweI GCATC 1 cut(s) 507
MaeI CTAG 4 cut(s) 45, 240, 524, 1236
MaeII ACGT 4 cut(s) 315, 462, 950, 1152
MaeIII GTNAC 4 cut(s) 63, 296, 623, 1003
MalI GATC 4 cut(s) 112, 351, 416, 1159
MboI GATC 4 cut(s) 110, 349, 414, 1157
MboII GAAGA 9 cut(s) 108, 111, 478, 539, 584, 616, 629, 776, 1003
MfeI CAATTG 1 cut(s) 58
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 5 cut(s) 697, 862, 1126, 1216, 1256
MlsI TGGCCA 1 cut(s) 430
MluCI AATT 7 cut(s) 58, 96, 482, 537, 597, 976, 1019
MluNI TGGCCA 1 cut(s) 430
MlyI GAGTC 3 cut(s) 128, 620, 1036
MmeI TCCRAC 1 cut(s) 1019
Mox20I TGGCCA 1 cut(s) 430
MroXI GAANNNNTTC 2 cut(s) 849, 1282
MscI TGGCCA 1 cut(s) 430
MseI TTAA 3 cut(s) 140, 330, 947
MslI CAYNNNNRTG 1 cut(s) 1010
Msp20I TGGCCA 1 cut(s) 430
MspA1I CMGCKG 2 cut(s) 434, 1259
MspI CCGG 3 cut(s) 645, 916, 930
MspR9I CCNGG 3 cut(s) 13, 917, 930
MunI CAATTG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 4 cut(s) 98, 190, 267, 743
NciI CCSGG 2 cut(s) 917, 930
NdeI CATATG 2 cut(s) 739, 970
NdeII GATC 4 cut(s) 110, 349, 414, 1157
NlaIII CATG 7 cut(s) 290, 505, 991, 1003, 1151, 1185, 1277
NlaIV GGNNCC 3 cut(s) 156, 1195, 1215
NmuCI GTSAC 2 cut(s) 623, 1003
PdmI GAANNNNTTC 2 cut(s) 849, 1282
PfeI GAWTC 1 cut(s) 1091
PkrI GCNGC 4 cut(s) 199, 219, 522, 736
PleI GAGTC 3 cut(s) 128, 620, 1036
PpsI GAGTC 3 cut(s) 128, 620, 1036
PpuMI RGGWCCY 1 cut(s) 1230
PsiI TTATAA 2 cut(s) 411, 1167
Psp124BI GAGCTC 2 cut(s) 697, 1256
Psp1406I AACGTT 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 1230
Psp6I CCWGG 1 cut(s) 11
PspFI CCCAGC 3 cut(s) 106, 323, 1209
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 3 cut(s) 156, 1195, 1215
PspPI GGNCC 3 cut(s) 41, 1194, 1230
PspPPI RGGWCCY 1 cut(s) 1230
PsuI RGATCY 1 cut(s) 414
PvuII CAGCTG 2 cut(s) 434, 1259
RsaI GTAC 4 cut(s) 87, 156, 660, 921
RsaNI GTAC 4 cut(s) 86, 155, 659, 920
RseI CAYNNNNRTG 1 cut(s) 1010
SacI GAGCTC 2 cut(s) 697, 1256
SalI GTCGAC 1 cut(s) 243
SaqAI TTAA 3 cut(s) 140, 330, 947
SatI GCNGC 4 cut(s) 198, 218, 521, 735
Sau3AI GATC 4 cut(s) 110, 349, 414, 1157
Sau96I GGNCC 3 cut(s) 41, 1194, 1230
SchI GAGTC 3 cut(s) 128, 620, 1036
ScrFI CCNGG 3 cut(s) 13, 917, 930
SduI GDGCHC 5 cut(s) 697, 862, 1126, 1216, 1256
SfaNI GCATC 1 cut(s) 507
SfcI CTRYAG 1 cut(s) 175
SinI GGWCC 2 cut(s) 1194, 1230
SmiMI CAYNNNNRTG 1 cut(s) 1010
SmlI CTYRAG 3 cut(s) 421, 773, 923
SmoI CTYRAG 3 cut(s) 421, 773, 923
SpeI ACTAGT 1 cut(s) 239
Sse9I AATT 7 cut(s) 58, 96, 482, 537, 597, 976, 1019
SsiI CCGC 7 cut(s) 50, 197, 200, 220, 675, 734, 867
SspMI CTAG 4 cut(s) 45, 240, 524, 1236
SstI GAGCTC 2 cut(s) 697, 1256
StyD4I CCNGG 3 cut(s) 11, 915, 928
TaaI ACNGT 2 cut(s) 384, 658
TaiI ACGT 4 cut(s) 318, 465, 953, 1155
TaqI TCGA 5 cut(s) 244, 352, 956, 1156, 1246
TasI AATT 7 cut(s) 58, 96, 482, 537, 597, 976, 1019
TatI WGTACW 2 cut(s) 85, 658
TauI GCSGC 2 cut(s) 200, 737
TfiI GAWTC 1 cut(s) 1091
Tru1I TTAA 3 cut(s) 140, 330, 947
Tru9I TTAA 3 cut(s) 140, 330, 947
TscAI CASTG 3 cut(s) 108, 237, 714
TseFI GTSAC 2 cut(s) 623, 1003
TseI GCWGC 2 cut(s) 217, 520
Tsp45I GTSAC 2 cut(s) 623, 1003
TspDTI ATGAA 7 cut(s) 480, 796, 842, 1004, 1077, 1155, 1262
TspRI CASTG 3 cut(s) 108, 237, 714
VpaK11BI GGWCC 2 cut(s) 1194, 1230
XapI RAATTY 1 cut(s) 976
XmiI GTMKAC 1 cut(s) 244
XmnI GAANNNNTTC 2 cut(s) 849, 1282
XspI CTAG 4 cut(s) 45, 240, 524, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.