Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004356

Physical Location & Seq

Genomic Coordinates Reverse (-)

3523455 .. 3525329

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAGAAGCTCCTGGTTCAGTAAACTCTCCCTCATTTTTGGCCCTAGACCGCCACTCAGTTGGTTACTCTTGTGTGTTGTTAGTGTACTCGCACTAATTGCAGTGCTGGGATCATCTTCTTCTCATACATTTGACTCTTTAACTATCACTCCAGTACCCGACATATATACAAACTATAGGAGGCTAAAGGAGCAAGCGGCGGTTGATTATCTGGAGCTGAGGTCTCTTTCATTGGGGGCTAGTCGACAAAGAGAGCTTGGCCTTTGTAGCAAAGAAAGAGAAAATCACGTGCCTTGTTACAATGTTTCAGCAAACCTTTTAGCCGGGTTTAAAGATGGGGAGGAGTTTGATCGGCATTGTGAAGTATCAAGAAACAGAGAACGGTGTCTAGTTCGCCCTCCTAAGGATTATAAGATCCCCCTGAGGTGGCCAGCTGGTAGGGATGTGATATGGAGTGGAAACGTGAAGATAACCAAAGACCAATTTCTTTCATCTGGAAGCATGACCAAAAGGTTGATGCTACTAGAAGAAAATCAAATCGCCTTTCACTCTGACGATGGTCTGATTTTTGATGGTGTCAAGGATTATTCTCTTCAAATTGCAAAGATGATAGGTTTAAAAAGTGACTCTGACTTTCTTCAAGCCGGTGTGCAAACTGTTCTGGATATTGGTTGCGGTTTTGGTAGTTTCGGAGCTCATTTAGTATCACTGAATGTAATGGCTATTTGTATTGCGGCATACGAGGCAACTGGCAGTCAAGTTCAGTTGACCCTTGAGAGAGGTCTTCCAGCAATGATTGGAAACTTCATTACAAGACAGCTTCCTTACCCAGCATTGTCATTTGAAATGGTTCATTGTGCTCAGTGTGGTATTGTTTGGGACAAAAAAGATTCGATGTTGCTTTTAGAAGTTGACCGGGTACTCAAGCCCGGAGGCTACTTTGTTGTAACCTCATTGACAAGCCAACCATATGGAAGTTCATTGAGCATGAAGAATAGCATGTTCACAACGATGGAGGAATTGACCCCGAAAGTCTGTTGGACTCTAAAAGCTCAGCAATATGAAACTTTTATCTGGCAGAAAACTGTGGATTCTGATTGCTATGCATCTCGTAAGCAGGGTGCTCTACCAGTTTGTAATGAAGGGCAAGACGTTCGATCGATATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

390

Amino Acids

43.44

Weight (kDa)

7.48

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT1G13860 AT2G03480 AT2G03480 AT2G03480
fragaria_vesca	FvH4_4g30250 FvH4_5g37070 FvH4_5g37070
malus_domestica	MD13G1063700.v1.1 MD16G1062200.v1.1 MD16G1062400.v1.1
prunus_persica	Prupe.1G284100_v2.0.a1 Prupe.1G285100_v2.0.a1
pyrus_communis	pycom13g05630 pycom16g05450
rosa_chinensis	RchiOBHm_Chr4g0438551 RchiOBHm_Chr7g0238621
rosa_laevigata	RLG00000006352
rosa_multiflora	Rmu_sc0002327.1_g000004 Rmu_sc0003812.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379560
rosa_rugosa	Rorug04G0311400
rosa_samantha	Rh4AG361800 Rh4BG373200 Rh4CG387100 Rh4DG367800 Rh4DG367900
rosa_wichuraiana	Rw0G006650 Rw0G016600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	411, 1168
AccI	GTMKAC	1 cut(s)	244
AciI	CCGC	5 cut(s)	50, 197, 200, 675, 734
AclWI	GGATC	2 cut(s)	118, 409
AcoI	YGGCCR	1 cut(s)	428
AcvI	CACGTG	1 cut(s)	289
AfaI	GTAC	3 cut(s)	87, 156, 921
AfiI	CCNNNNNNNGG	2 cut(s)	403, 426
AgsI	TTSAA	3 cut(s)	596, 641, 845
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	7 cut(s)	9, 217, 256, 434, 695, 820, 1052
AluI	AGCT	7 cut(s)	9, 217, 256, 434, 695, 820, 1052
Alw21I	GWGCWC	3 cut(s)	697, 862, 1126
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	118, 409
AoxI	GGCC	3 cut(s)	40, 259, 428
Asp700I	GAANNNNTTC	1 cut(s)	849
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	3 cut(s)	325, 917, 930
AxyI	CCTNAGG	2 cut(s)	402, 422
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BalI	TGGCCA	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	697
BbrPI	CACGTG	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	776
Bbv12I	GWGCWC	3 cut(s)	697, 862, 1126
BbvCI	CCTCAGC	1 cut(s)	218
BccI	CCATC	4 cut(s)	329, 551, 566, 1006
BcgI	CGANNNNNNTGC	2 cut(s)	1136, 1170
BciT130I	CCWGG	1 cut(s)	13
BcnI	CCSGG	3 cut(s)	325, 917, 930
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	4 cut(s)	45, 240, 389, 524
BfmI	CTRYAG	1 cut(s)	175
BisI	GCNGC	2 cut(s)	198, 735
BlpI	GCTNAGC	1 cut(s)	1053
BlsI	GCNGC	2 cut(s)	199, 736
Bme1390I	CCNGG	4 cut(s)	13, 325, 917, 930
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	4 cut(s)	13, 325, 917, 930
BmsI	GCATC	2 cut(s)	507, 1115
BoxI	GACNNNNGTC	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	776
BpmI	CTGGAG	2 cut(s)	135, 233
Bpu10I	CCTNAGC	1 cut(s)	218
Bpu1102I	GCTNAGC	1 cut(s)	1053
BpuEI	CTTGAG	2 cut(s)	794, 908
BpuMI	CCSGG	3 cut(s)	325, 917, 930
Bsa29I	ATCGAT	1 cut(s)	1160
BsaAI	YACGTR	1 cut(s)	289
BsaI	GGTCTC	1 cut(s)	228
BsaXI	ACNNNNNCTCC	4 cut(s)	133, 163, 206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 426
Bse118I	RCCGGY	1 cut(s)	644
Bse1I	ACTGG	3 cut(s)	152, 754, 1130
Bse21I	CCTNAGG	2 cut(s)	402, 422
Bse3DI	GCAATG	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	13
BseCI	ATCGAT	1 cut(s)	1160
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	2 cut(s)	403, 426
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	5 cut(s)	70, 209, 413, 875, 1067
BseNI	ACTGG	3 cut(s)	152, 754, 1130
BseRI	GAGGAG	1 cut(s)	356
BseYI	CCCAGC	2 cut(s)	106, 829
Bsh1285I	CGRYCG	1 cut(s)	1160
BshFI	GGCC	3 cut(s)	42, 261, 430
BshVI	ATCGAT	1 cut(s)	1160
BsiEI	CGRYCG	1 cut(s)	1160
BsiHKAI	GWGCWC	3 cut(s)	697, 862, 1126
BsiSI	CCGG	4 cut(s)	324, 645, 916, 930
BslFI	GGGAC	1 cut(s)	893
BslI	CCNNNNNNNGG	2 cut(s)	403, 426
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	893
BsnI	GGCC	3 cut(s)	42, 261, 430
Bso31I	GGTCTC	1 cut(s)	228
Bsp1286I	GDGCHC	3 cut(s)	697, 862, 1126
Bsp143I	GATC	4 cut(s)	110, 349, 414, 1157
Bsp1720I	GCTNAGC	1 cut(s)	1053
BspACI	CCGC	5 cut(s)	50, 197, 200, 675, 734
BspANI	GGCC	3 cut(s)	42, 261, 430
BspCNI	CTCAG	5 cut(s)	69, 210, 414, 874, 1066
BspDI	ATCGAT	1 cut(s)	1160
BspPI	GGATC	2 cut(s)	118, 409
BspTNI	GGTCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	798
BsrFI	RCCGGY	1 cut(s)	644
BsrI	ACTGG	3 cut(s)	152, 754, 1130
BssAI	RCCGGY	1 cut(s)	644
BssMI	GATC	4 cut(s)	110, 349, 414, 1157
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	3 cut(s)	384, 658, 1087
Bst6I	CTCTTC	1 cut(s)	597
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	195, 432
BstDEI	CTNAG	6 cut(s)	56, 218, 402, 422, 861, 1053
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	4 cut(s)	113, 352, 417, 1160
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	4 cut(s)	110, 349, 414, 1157
BstMCI	CGRYCG	1 cut(s)	1160
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 190, 267, 743
BstNI	CCWGG	1 cut(s)	13
BstNSI	RCATGY	1 cut(s)	1003
BstPAI	GACNNNNGTC	1 cut(s)	558
BstSCI	CCNGG	4 cut(s)	11, 323, 915, 928
BstSFI	CTRYAG	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	776
BstX2I	RGATCY	1 cut(s)	414
BstXI	CCANNNNNNTGG	2 cut(s)	60, 971
BstYI	RGATCY	1 cut(s)	414
Bsu15I	ATCGAT	1 cut(s)	1160
Bsu36I	CCTNAGG	2 cut(s)	402, 422
BsuRI	GGCC	3 cut(s)	42, 261, 430
BsuTUI	ATCGAT	1 cut(s)	1160
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	108, 707, 869
Cac8I	GCNNGC	2 cut(s)	195, 432
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	41
ClaI	ATCGAT	1 cut(s)	1160
Csp6I	GTAC	3 cut(s)	86, 155, 920
CviAII	CATG	3 cut(s)	502, 988, 1000
CviQI	GTAC	3 cut(s)	86, 155, 920
DdeI	CTNAG	6 cut(s)	56, 218, 402, 422, 861, 1053
DpnI	GATC	4 cut(s)	112, 351, 416, 1159
DpnII	GATC	4 cut(s)	110, 349, 414, 1157
DraI	TTTAAA	2 cut(s)	331, 618
EaeI	YGGCCR	1 cut(s)	428
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Ecl136II	GAGCTC	1 cut(s)	695
Eco24I	GRGCYC	1 cut(s)	697
Eco31I	GGTCTC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	695
Eco72I	CACGTG	1 cut(s)	289
Eco81I	CCTNAGG	2 cut(s)	402, 422
EcoICRI	GAGCTC	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	11
EcoT22I	ATGCAT	1 cut(s)	1108
EcoT38I	GRGCYC	1 cut(s)	697
FaeI	CATG	3 cut(s)	505, 991, 1003
FaqI	GGGAC	1 cut(s)	893
FatI	CATG	3 cut(s)	501, 987, 999
FauNDI	CATATG	1 cut(s)	970
FblI	GTMKAC	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	198, 735
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	2 cut(s)	198, 735
FspBI	CTAG	4 cut(s)	45, 240, 389, 524
GluI	GCNGC	2 cut(s)	198, 735
GsaI	CCCAGC	2 cut(s)	110, 833
GsuI	CTGGAG	2 cut(s)	135, 233
HaeIII	GGCC	3 cut(s)	42, 261, 430
HapII	CCGG	4 cut(s)	324, 645, 916, 930
Hin1II	CATG	3 cut(s)	505, 991, 1003
HincII	GTYRAC	3 cut(s)	245, 768, 913
HindII	GTYRAC	3 cut(s)	245, 768, 913
HinfI	GANTC	5 cut(s)	134, 626, 890, 1042, 1091
HpaII	CCGG	4 cut(s)	324, 645, 916, 930
Hpy166II	GTNNAC	6 cut(s)	23, 86, 245, 768, 913, 1005
Hpy188I	TCNGA	5 cut(s)	553, 564, 631, 692, 1096
Hpy188III	TCNNGA	4 cut(s)	212, 369, 495, 662
Hpy8I	GTNNAC	6 cut(s)	23, 86, 245, 768, 913, 1005
HpyAV	CCTTC	1 cut(s)	1136
HpyCH4III	ACNGT	3 cut(s)	384, 658, 1087
HpyCH4IV	ACGT	3 cut(s)	288, 462, 1152
HpyCH4V	TGCA	4 cut(s)	101, 602, 652, 1106
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 190, 267, 743
HpyF3I	CTNAG	6 cut(s)	56, 218, 402, 422, 861, 1053
HpySE526I	ACGT	3 cut(s)	288, 462, 1152
Hsp92II	CATG	3 cut(s)	505, 991, 1003
Kzo9I	GATC	4 cut(s)	110, 349, 414, 1157
LmnI	GCTCC	4 cut(s)	14, 190, 214, 692
LweI	GCATC	2 cut(s)	507, 1115
MaeI	CTAG	4 cut(s)	45, 240, 389, 524
MaeII	ACGT	3 cut(s)	288, 462, 1152
MaeIII	GTNAC	4 cut(s)	63, 296, 623, 946
MalI	GATC	4 cut(s)	112, 351, 416, 1159
MboI	GATC	4 cut(s)	110, 349, 414, 1157
MboII	GAAGA	8 cut(s)	108, 111, 478, 539, 584, 629, 776, 1003
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	3 cut(s)	697, 862, 1126
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	4 cut(s)	96, 482, 597, 1019
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	3 cut(s)	128, 620, 1036
MmeI	TCCRAC	1 cut(s)	1019
Mox20I	TGGCCA	1 cut(s)	430
Mph1103I	ATGCAT	1 cut(s)	1108
MroXI	GAANNNNTTC	1 cut(s)	849
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	3 cut(s)	140, 330, 617
MslI	CAYNNNNRTG	1 cut(s)	1010
Msp20I	TGGCCA	1 cut(s)	430
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	4 cut(s)	324, 645, 916, 930
MspR9I	CCNGG	4 cut(s)	13, 325, 917, 930
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	4 cut(s)	98, 190, 267, 743
NciI	CCSGG	3 cut(s)	325, 917, 930
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	4 cut(s)	110, 349, 414, 1157
NlaIII	CATG	3 cut(s)	505, 991, 1003
NmuCI	GTSAC	1 cut(s)	623
NsiI	ATGCAT	1 cut(s)	1108
NspI	RCATGY	1 cut(s)	1003
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	2 cut(s)	890, 1091
PkrI	GCNGC	2 cut(s)	199, 736
Ple19I	CGATCG	1 cut(s)	1160
PleI	GAGTC	3 cut(s)	128, 620, 1036
PmaCI	CACGTG	1 cut(s)	289
PmlI	CACGTG	1 cut(s)	289
PpsI	GAGTC	3 cut(s)	128, 620, 1036
Ppu21I	YACGTR	1 cut(s)	289
PshAI	GACNNNNGTC	1 cut(s)	558
PsiI	TTATAA	2 cut(s)	411, 1168
Psp124BI	GAGCTC	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	11
PspCI	CACGTG	1 cut(s)	289
PspFI	CCCAGC	2 cut(s)	106, 829
PspGI	CCWGG	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	414
PvuI	CGATCG	1 cut(s)	1160
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	3 cut(s)	87, 156, 921
RsaNI	GTAC	3 cut(s)	86, 155, 920
RseI	CAYNNNNRTG	1 cut(s)	1010
SacI	GAGCTC	1 cut(s)	697
SalI	GTCGAC	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	140, 330, 617
SatI	GCNGC	2 cut(s)	198, 735
Sau3AI	GATC	4 cut(s)	110, 349, 414, 1157
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	3 cut(s)	128, 620, 1036
ScrFI	CCNGG	4 cut(s)	13, 325, 917, 930
SduI	GDGCHC	3 cut(s)	697, 862, 1126
SfaNI	GCATC	2 cut(s)	507, 1115
SfcI	CTRYAG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	1010
SmlI	CTYRAG	2 cut(s)	773, 923
SmoI	CTYRAG	2 cut(s)	773, 923
Sse9I	AATT	4 cut(s)	96, 482, 597, 1019
SsiI	CCGC	5 cut(s)	50, 197, 200, 675, 734
SspMI	CTAG	4 cut(s)	45, 240, 389, 524
SstI	GAGCTC	1 cut(s)	697
StyD4I	CCNGG	4 cut(s)	11, 323, 915, 928
TaaI	ACNGT	3 cut(s)	384, 658, 1087
TaiI	ACGT	3 cut(s)	291, 465, 1155
TaqI	TCGA	4 cut(s)	244, 893, 1156, 1160
TasI	AATT	4 cut(s)	96, 482, 597, 1019
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	2 cut(s)	200, 737
TfiI	GAWTC	2 cut(s)	890, 1091
Tru1I	TTAA	3 cut(s)	140, 330, 617
Tru9I	TTAA	3 cut(s)	140, 330, 617
TscAI	CASTG	3 cut(s)	108, 714, 869
TseFI	GTSAC	1 cut(s)	623
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	8 cut(s)	219, 480, 796, 842, 969, 1004, 1077, 1155
TspRI	CASTG	3 cut(s)	108, 714, 869
XceI	RCATGY	1 cut(s)	1003
XmiI	GTMKAC	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	4 cut(s)	45, 240, 389, 524
Zsp2I	ATGCAT	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.