Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003954

Physical Location & Seq

Genomic Coordinates Reverse (-)

6367072 .. 6368707

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1076800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTTCTCATAAGCTATCCAAGGGTCAACTATGCTATGGAGGGTAGGATCCCAACGAATGCAGTCGATTTTCCTGGAACAGTAGGGCGCAGCATTTCCACTATTAGAGAGGTTGACGTATCAAGAGCGCAGCTCCAAGACTCCCACGGTGGTGGCTCTGAGCATTCTGTTGAGATCGGTGGTTCTGATCATTTGAATGCAGCACAGAATACCCTTCGGGCATTCTTGGCTTCTGCAGATCAAAATGTGAGTTCTCTATCTGGTTCCTACCGCTATGTAAATGCTCCGCAAGTCTCCTACCACGAGATGAATCCTCAGCCCAGCGCCTACCAAATCAATCCTCAGCATGGCCCCTACAAACTCAATCCTCAGCACAGCCCATACCGAATCAATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

133

Amino Acids

14.45

Weight (kDa)

6.57

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170
malus_domestica	MD09G1087900.v1.1 MD17G1076800.v1.1 MD17G1076900.v1.1 MD17G1077600.v1.1
prunus_persica	Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1
pyrus_communis	pycom09g01340 pycom17g07720
rosa_chinensis	RchiOBHm_Chr2g0162761 RchiOBHm_Chr2g0162821 RchiOBHm_Chr2g0162871
rosa_laevigata	RLG00000021358
rosa_multiflora	Rmu_co8424937.1_g000001 Rmu_sc0006129.1_g000028
rosa_roxburghii	Rroxscaffold_2G00087750
rosa_rugosa	Rorug02G0498900 Rorug02G0498900 Rorug02G0499000
rosa_samantha	Rh2AG564900 Rh2BG577600 Rh2CG547400 Rh2DG587500
rosa_wichuraiana	Rw2G046750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	271, 287
AclWI	GGATC	2 cut(s)	43, 56
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	73
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	2 cut(s)	15, 133
AluI	AGCT	2 cut(s)	15, 133
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	43, 56
AoxI	GGCC	1 cut(s)	349
ApeKI	GCWGC	3 cut(s)	90, 130, 200
AspLEI	GCGC	3 cut(s)	90, 130, 326
AspS9I	GGNCC	1 cut(s)	350
BamHI	GGATCC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	302
BbvCI	CCTCAGC	3 cut(s)	315, 342, 369
BbvI	GCAGC	3 cut(s)	102, 142, 212
BciT130I	CCWGG	1 cut(s)	75
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	3 cut(s)	91, 131, 201
BlsI	GCNGC	3 cut(s)	92, 132, 202
Bme1390I	CCNGG	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	3 cut(s)	50, 265, 352
BmrFI	CCNGG	1 cut(s)	75
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
Bpu10I	CCTNAGC	3 cut(s)	315, 342, 369
BsaJI	CCNNGG	2 cut(s)	20, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	20, 145
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	4 cut(s)	150, 329, 356, 383
BseXI	GCAGC	3 cut(s)	102, 142, 212
BseYI	CCCAGC	1 cut(s)	320
BshFI	GGCC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	298
BsmI	GAATGC	4 cut(s)	64, 163, 202, 221
BsnI	GGCC	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	48, 174, 187, 238
BspACI	CCGC	2 cut(s)	271, 287
BspANI	GGCC	1 cut(s)	351
BspCNI	CTCAG	4 cut(s)	151, 328, 355, 382
BspLI	GGNNCC	3 cut(s)	50, 265, 352
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	2 cut(s)	43, 56
BssECI	CCNNGG	2 cut(s)	20, 145
BssMI	GATC	4 cut(s)	48, 174, 187, 238
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	82, 149
BstDEI	CTNAG	5 cut(s)	159, 315, 342, 369, 396
BstDSI	CCRYGG	1 cut(s)	145
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	3 cut(s)	90, 130, 326
BstKTI	GATC	4 cut(s)	51, 177, 190, 241
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	4 cut(s)	48, 174, 187, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	102, 142, 212
BstX2I	RGATCY	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	145
CfoI	GCGC	3 cut(s)	90, 130, 326
Cfr13I	GGNCC	1 cut(s)	350
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	7 cut(s)	15, 133, 156, 230, 319, 351, 378
CviKI_1	RGCY	7 cut(s)	15, 133, 156, 230, 319, 351, 378
DdeI	CTNAG	5 cut(s)	159, 315, 342, 369, 396
DpnI	GATC	4 cut(s)	50, 176, 189, 240
DpnII	GATC	4 cut(s)	48, 174, 187, 238
Eco130I	CCWWGG	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	1 cut(s)	350
FaiI	YATR	6 cut(s)	11, 33, 38, 276, 348, 382
FatI	CATG	1 cut(s)	346
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	3 cut(s)	91, 131, 201
Fsp4HI	GCNGC	3 cut(s)	91, 131, 201
GlaI	GCGC	3 cut(s)	89, 129, 325
GluI	GCNGC	3 cut(s)	91, 131, 201
GsaI	CCCAGC	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	351
HhaI	GCGC	3 cut(s)	90, 130, 326
Hin1II	CATG	1 cut(s)	350
Hin6I	GCGC	3 cut(s)	88, 128, 324
HinP1I	GCGC	3 cut(s)	88, 128, 324
HincII	GTYRAC	2 cut(s)	28, 115
HindII	GTYRAC	2 cut(s)	28, 115
HinfI	GANTC	3 cut(s)	140, 310, 387
Hpy166II	GTNNAC	2 cut(s)	28, 115
Hpy188I	TCNGA	2 cut(s)	160, 187
Hpy188III	TCNNGA	1 cut(s)	123
Hpy8I	GTNNAC	2 cut(s)	28, 115
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	82, 149
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	62, 200, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	5 cut(s)	159, 315, 342, 369, 396
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	350
HspAI	GCGC	3 cut(s)	88, 128, 324
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	48, 174, 187, 238
LmnI	GCTCC	2 cut(s)	138, 289
LpnPI	CCDG	4 cut(s)	60, 87, 246, 334
Lsp1109I	GCAGC	3 cut(s)	102, 142, 212
MaeII	ACGT	1 cut(s)	117
MalI	GATC	4 cut(s)	50, 176, 189, 240
MboI	GATC	4 cut(s)	48, 174, 187, 238
MflI	RGATCY	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	5 cut(s)	34, 103, 324, 351, 378
MslI	CAYNNNNRTG	2 cut(s)	150, 195
MspR9I	CCNGG	1 cut(s)	75
Mva1269I	GAATGC	4 cut(s)	64, 163, 202, 221
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	4 cut(s)	48, 174, 187, 238
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	3 cut(s)	50, 265, 352
OliI	CACNNNNGTG	1 cut(s)	150
PctI	GAATGC	4 cut(s)	64, 163, 202, 221
PfeI	GAWTC	2 cut(s)	310, 387
PfoI	TCCNGGA	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	92, 132, 202
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	50, 265, 352
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	48
RseI	CAYNNNNRTG	2 cut(s)	150, 195
SatI	GCNGC	3 cut(s)	91, 131, 201
Sau3AI	GATC	4 cut(s)	48, 174, 187, 238
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	4 cut(s)	17, 114, 120, 135
SfcI	CTRYAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	2 cut(s)	150, 195
SsiI	CCGC	2 cut(s)	271, 287
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	82, 149
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	310, 387
TseI	GCWGC	3 cut(s)	90, 130, 200
TspDTI	ATGAA	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.