Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003954

Physical Location & Seq

Genomic Coordinates Forward (+)

78484577 .. 78485867

Gene Structure 1291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53104

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGATTGGAACAAGCGGAATGTTCTCAGCCAACGGCCTACTGTGCAGTTTAAAAGAAAAGGGAGCGGCAACAAGAAAGGAAACTGGAATAATTCAAACCGCGAACAGTCTTCAGGAAATTCTCAGTCCCTTGATACTGTGTATCGTATACTTTGCCCCTCTAAAAAAATTGGTGGTGTAATTGGAAAAGGTGGTGGCATAATCAAATCCCTGAGAGAAGAGACCCGGTCCAAGATTACAGTTGCTGATTCTGCTCCGGGCTCAGATGAGAGGGTCATTATTATCTTTAGTTCCCCAATCAAAATTTCAAGGAAACAAAATAGTGATGAAGATTCAAAGGAGCCCTTGGAGCCACACTGTGCTGCCCAAGATGCACTTTTGAAAGTTCATGACAGGATTGTAGAGGAAGATCTTTATAATGGAGTTACATTTGATGATGATAATGAGAATATTGTTGTCACAAGACTTCTAGTTCCAAACAACTTGGTAGGATGTCTTCTAGGAAAGCGTGGGGATGTTATTCAAAGATTGCGAAGTGAGACACGTGCAAACATTTCCTACTTGTGCTATGGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

192

Amino Acids

21.42

Weight (kDa)

9.17

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	48 - 102	6.1e-13	KH domain
KH_1	PF00013	154 - 186	8.3e-08	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170
malus_domestica	MD09G1087900.v1.1 MD17G1076800.v1.1 MD17G1076900.v1.1 MD17G1077600.v1.1
prunus_persica	Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1
pyrus_communis	pycom09g01340 pycom17g07720
rosa_chinensis	RchiOBHm_Chr2g0162761 RchiOBHm_Chr2g0162821 RchiOBHm_Chr2g0162871
rosa_laevigata	RLG00000021358
rosa_multiflora	Rmu_co8424937.1_g000001 Rmu_sc0006129.1_g000028
rosa_roxburghii	Rroxscaffold_2G00087750
rosa_rugosa	Rorug02G0498900 Rorug02G0498900 Rorug02G0499000
rosa_samantha	Rh2AG564900 Rh2BG577600 Rh2CG547400 Rh2DG587500
rosa_wichuraiana	Rw2G046750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AccBSI	CCGCTC	1 cut(s)	66
AccI	GTMKAC	1 cut(s)	148
AccII	CGCG	1 cut(s)	102
AciI	CCGC	3 cut(s)	16, 66, 100
AcsI	RAATTY	2 cut(s)	118, 303
AcuI	CTGAAG	1 cut(s)	96
AcvI	CACGTG	1 cut(s)	545
AdeI	CACNNNGTG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	542
AgsI	TTSAA	5 cut(s)	96, 309, 336, 382, 524
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
Alw26I	GTCTC	2 cut(s)	215, 533
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	2 cut(s)	118, 303
AspS9I	GGNCC	1 cut(s)	228
AsuC2I	CCSGG	2 cut(s)	226, 258
AvaII	GGWCC	1 cut(s)	228
BanII	GRGCYC	2 cut(s)	263, 345
BarI	GAAGNNNNNNTAC	2 cut(s)	480, 512
BbrPI	CACGTG	1 cut(s)	545
BbsI	GAAGAC	2 cut(s)	102, 488
BbvI	GCAGC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	566
BcnI	CCSGG	2 cut(s)	226, 258
BcoDI	GTCTC	2 cut(s)	215, 533
BfaI	CTAG	2 cut(s)	470, 500
BfuI	GTATCC	1 cut(s)	566
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	2 cut(s)	67, 363
BlsI	GCNGC	2 cut(s)	68, 364
Bme1390I	CCNGG	2 cut(s)	226, 258
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	342, 351
BmrFI	CCNGG	2 cut(s)	226, 258
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	2 cut(s)	102, 488
BpuMI	CCSGG	2 cut(s)	226, 258
BsaAI	YACGTR	1 cut(s)	545
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	2 cut(s)	497, 520
BseMII	CTCAG	4 cut(s)	40, 137, 203, 276
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	226, 257
BslFI	GGGAC	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	215, 533
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	37
Bso31I	GGTCTC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	263, 345
Bsp143I	GATC	1 cut(s)	409
BspACI	CCGC	3 cut(s)	16, 66, 100
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	4 cut(s)	39, 136, 204, 275
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	342, 351
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	1 cut(s)	409
BssNAI	GTATAC	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	345
Bst1107I	GTATAC	1 cut(s)	149
Bst4CI	ACNGT	5 cut(s)	43, 108, 139, 241, 359
Bst6I	CTCTTC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	545
BstDEI	CTNAG	4 cut(s)	26, 123, 212, 262
BstF5I	GGATG	2 cut(s)	497, 520
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	2 cut(s)	215, 533
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 251, 349, 371
BstSCI	CCNGG	2 cut(s)	224, 256
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	349
BstV2I	GAAGAC	2 cut(s)	102, 488
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BstZ17I	GTATAC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	497, 520
BtsIMutI	CAGTG	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	245
CciI	TCATGA	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	228
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	5 cut(s)	30, 37, 261, 343, 352
CviKI_1	RGCY	5 cut(s)	30, 37, 261, 343, 352
DdeI	CTNAG	4 cut(s)	26, 123, 212, 262
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DraI	TTTAAA	1 cut(s)	52
DraIII	CACNNNGTG	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	2 cut(s)	263, 345
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	96
Eco72I	CACGTG	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	2 cut(s)	263, 345
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	1 cut(s)	392
FaiI	YATR	5 cut(s)	149, 200, 390, 417, 570
FalI	AAGNNNNNCTT	4 cut(s)	329, 361, 360, 392
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	67, 363
FokI	GGATG	2 cut(s)	504, 527
FriOI	GRGCYC	2 cut(s)	263, 345
Fsp4HI	GCNGC	2 cut(s)	67, 363
FspBI	CTAG	2 cut(s)	470, 500
GluI	GCNGC	2 cut(s)	67, 363
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	2 cut(s)	226, 257
Hin1II	CATG	1 cut(s)	392
HinfI	GANTC	2 cut(s)	248, 332
HpaII	CCGG	2 cut(s)	226, 257
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	2 cut(s)	114, 389
Hpy8I	GTNNAC	1 cut(s)	149
HpyCH4III	ACNGT	5 cut(s)	43, 108, 139, 241, 359
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	3 cut(s)	46, 374, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 251, 349, 371
HpyF3I	CTNAG	4 cut(s)	26, 123, 212, 262
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	1 cut(s)	392
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	4 cut(s)	63, 259, 340, 349
LpnPI	CCDG	6 cut(s)	70, 99, 224, 239, 270, 379
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	2 cut(s)	470, 500
MaeII	ACGT	1 cut(s)	544
MaeIII	GTNAC	2 cut(s)	424, 457
MalI	GATC	1 cut(s)	411
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	1 cut(s)	409
MboII	GAAGA	5 cut(s)	102, 230, 341, 419, 488
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	2 cut(s)	263, 345
MluCI	AATT	5 cut(s)	91, 118, 168, 180, 303
MnlI	CCTC	3 cut(s)	169, 264, 397
MseI	TTAA	1 cut(s)	51
MspI	CCGG	2 cut(s)	226, 257
MspR9I	CCNGG	2 cut(s)	226, 258
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	4 cut(s)	43, 251, 349, 371
NciI	CCSGG	2 cut(s)	226, 258
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	2 cut(s)	342, 351
NmuCI	GTSAC	1 cut(s)	457
PagI	TCATGA	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	248, 332
PflFI	GACNNNGTC	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	68, 364
PmaCI	CACGTG	1 cut(s)	545
PmlI	CACGTG	1 cut(s)	545
Ppu21I	YACGTR	1 cut(s)	545
PsiI	TTATAA	1 cut(s)	417
PspCI	CACGTG	1 cut(s)	545
PspN4I	GGNNCC	2 cut(s)	342, 351
PspPI	GGNCC	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	409
PsyI	GACNNNGTC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	2 cut(s)	67, 363
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	226, 258
SduI	GDGCHC	2 cut(s)	263, 345
SetI	ASST	2 cut(s)	193, 547
SfaNI	GCATC	1 cut(s)	361
SinI	GGWCC	1 cut(s)	228
Sse9I	AATT	5 cut(s)	91, 118, 168, 180, 303
SsiI	CCGC	3 cut(s)	16, 66, 100
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	2 cut(s)	470, 500
StyD4I	CCNGG	2 cut(s)	224, 256
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	5 cut(s)	43, 108, 139, 241, 359
TaiI	ACGT	1 cut(s)	547
TasI	AATT	5 cut(s)	91, 118, 168, 180, 303
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	248, 332
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	2 cut(s)	342, 377
TspRI	CASTG	1 cut(s)	362
Tth111I	GACNNNGTC	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	2 cut(s)	118, 303
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	2 cut(s)	470, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.