RchiOBHm_Chr2g0162761

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003954
Physical Location & Seq
Forward (+)
78433338 .. 78433810
473 bp
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UTR
Exon/CDS
Intron
PRQ53100

Sequence Viewer

Length: 426 bp
ATGTACAGTAGCCAAGATATCTTTCTCTACAAGACTCGGTCCAAGATTACAATTGCTGATTTTGTTCCGGGTTCAGATGAGAGAGTAATTATTATATTTAGTTCCCCAATCAAAATTTCAAGGAAACAAAATAGTGATGAAGATTCAAAGGAGCCCTTGGAGCCACATTGTGCTGCCCAAGATGCACTTTTGAAAGTTCATGACAGGATTATAGAGGAAGATCTTTATAATGGAGTTACATTTGATGATGATAATGAGAATATTGTTGTCACAAGACTTCTAGTTCCAAACAACTTGGTAGGATGTCTTCTAGGAAAGCGTGGGGATGTTATTCAAAGATTACGAAGTGAGACACGTGCAAACATTCGAGTTCTTCCTGCAGATCAGCTTCCTACTTGTGTTATGGATACTGATGTCTTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

141

Amino Acids

15.91

Weight (kDa)

4.88

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 91 - 128 9.1e-10 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AcsI RAATTY 1 cut(s) 114
AcvI CACGTG 1 cut(s) 356
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 4 cut(s) 120, 147, 193, 335
AjuI GAANNNNNNNTTGG 3 cut(s) 38, 100, 132
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 69
AvaII GGWCC 1 cut(s) 39
BaeI ACNNNNGTAYC 1 cut(s) 399
BanII GRGCYC 1 cut(s) 156
BarI GAAGNNNNNNTAC 2 cut(s) 291, 323
BbrPI CACGTG 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 160
BciVI GTATCC 1 cut(s) 400
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 2 cut(s) 281, 311
BfmI CTRYAG 1 cut(s) 378
BfuI GTATCC 1 cut(s) 400
BglII AGATCT 1 cut(s) 220
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 153, 162
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 308, 331
BseXI GCAGC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 220, 382
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 153, 162
BspMAI CTGCAG 1 cut(s) 382
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 220, 382
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 8
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 356
BstF5I GGATG 2 cut(s) 308, 331
BstKTI GATC 2 cut(s) 223, 385
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 2 cut(s) 220, 382
BstMWI GCNNNNNNNGC 2 cut(s) 160, 182
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuI GTATCC 1 cut(s) 400
BtsCI GGATG 2 cut(s) 308, 331
CciI TCATGA 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 200
CviJI RGCY 4 cut(s) 12, 154, 163, 388
CviKI_1 RGCY 4 cut(s) 12, 154, 163, 388
CviQI GTAC 1 cut(s) 4
DpnI GATC 2 cut(s) 222, 384
DpnII GATC 2 cut(s) 220, 382
DraIII CACNNNGTG 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 156
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 39
Eco72I CACGTG 1 cut(s) 356
EcoRV GATATC 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 203
FaiI YATR 5 cut(s) 95, 201, 212, 228, 404
FalI AAGNNNNNCTT 4 cut(s) 140, 172, 171, 203
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 2 cut(s) 315, 338
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 2 cut(s) 281, 311
GluI GCNGC 1 cut(s) 174
HapII CCGG 1 cut(s) 68
Hin1II CATG 1 cut(s) 203
HinfI GANTC 2 cut(s) 34, 143
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 3 cut(s) 185, 359, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 182
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 2 cut(s) 220, 382
LmnI GCTCC 2 cut(s) 151, 160
LpnPI CCDG 3 cut(s) 81, 190, 390
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 172
MaeI CTAG 2 cut(s) 281, 311
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 2 cut(s) 235, 268
MalI GATC 2 cut(s) 222, 384
MboI GATC 2 cut(s) 220, 382
MboII GAAGA 4 cut(s) 152, 230, 299, 365
MfeI CAATTG 1 cut(s) 51
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 3 cut(s) 51, 87, 114
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 1 cut(s) 208
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 69
MunI CAATTG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 160, 182
NciI CCSGG 1 cut(s) 69
NdeII GATC 2 cut(s) 220, 382
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 153, 162
NmuCI GTSAC 1 cut(s) 268
PagI TCATGA 1 cut(s) 199
PfeI GAWTC 1 cut(s) 143
PflFI GACNNNGTC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 356
PmlI CACGTG 1 cut(s) 356
PpsI GAGTC 1 cut(s) 28
Ppu21I YACGTR 1 cut(s) 356
PsiI TTATAA 1 cut(s) 228
PspCI CACGTG 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 153, 162
PspPI GGNCC 1 cut(s) 39
PstI CTGCAG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 220
PsyI GACNNNGTC 1 cut(s) 37
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 220, 382
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 156
SetI ASST 2 cut(s) 358, 390
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 39
Sse9I AATT 3 cut(s) 51, 87, 114
SspI AATATT 1 cut(s) 262
SspMI CTAG 2 cut(s) 281, 311
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 358
TaqI TCGA 1 cut(s) 367
TaqII GACCGA 1 cut(s) 27
TasI AATT 3 cut(s) 51, 87, 114
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 143
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 153, 188
Tth111I GACNNNGTC 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 114
XspI CTAG 2 cut(s) 281, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.