Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003954

Physical Location & Seq

Genomic Coordinates Forward (+)

78516758 .. 78522212

Gene Structure 5455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53109

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGGATTGGAACAAGCGGAATGTTCTCAGCCAACGGCCTACTGTGCAGTTTAAAAGAAAAGGGAGCGGCAACAAGAAAGGAAACTGGAATAATTCAAACCGCGAACAGTCTTCAGGAAATTCTCAGTCCCTTGATACTGTGTATCGTATACTTTGCCCCTCTAAAAAAATTGGTGGTGTAATTGGAAAAGGTGGTGGCATAATCAAATCCCTGAGAGAAGAGACCCGGTCCAAGATTACAGTTGCTGATTCTGTTCCGGGCTCAGATGAGAGAGTCATTATTATCTTTAGTTCCCCAATCAAAATTTCAAGGAAACAAAATAGTGATGAAGATTCAAAGGAGCCCTTGGAGCCACACTGTGCTGCCCAAGATGCACTTTTGAAAGTTCATGACAGGATTGTAGAGGAAGATCTTTATAATGGAGTTACATTTGATGATGATAATGAGAATATTGTTGTCACAAGACTTCTAGTTCCAAACAACTTGGTAGGATGTCTTCTAGGAAAGCGTGGGGATGTTATTCAAAGATTGCGAAGTGAGACACGTGCAAACATTCGGGTTCTTCCTGCAGATCAGCTTCCTACTTGTGCTATGGATACTGATGAATTGGTGCAGATATCCGGAAAACCGGACGTGGCAAAAAGAGCACTGTATGAAGTGTCTACTCTATTGCATCAGAATCCACGTAAGGACAAACCTCCTTTGGGATTGGCTATACCTTTTGGGGGTCAGGGGTTTCATCTGCCAGGAGCCCCAAATATGCTGCCACCTGGCAATCCAATGTGGCCTAATAGGGAACCTTCCCACAGTATGCCACCAATGCCATGGATGGGAGAATATGGAAATCATTCCTCTGGATATGCTCGAGGAGGGTTTAATGGTGATCCTGCGGGACATGGGGTTGAAGCTTCAGCTGAGTTTTATATAAAGATTTTGTGTTCGGCTGGGAAAATTGGTGGGGTTATTGGCAAGGGGGGTTTTAATGTGAAACAGTTACAAGAGGAAACAGGAGCCAATATTCATGTTCAGGATGCATCAACAGACTCAGAAGAACGTGTGATTCGTGTCTCTGCTTTCGAGGCTTTGCGGAATCCAAGGTCGCAAACAATTGAGGCAATTCTTCAGCTTCAAAACAAAGCAAGTGAATTATCTGATAAAGGTACGATCACGACTAGGCTTCTTGTTCCATCTAGTAAAGTTGGCTGCATCCTTGGACAAGGAGGACAAGTTATTAATGAGATGAGAAGGAGAACCCAGGCAGATATTCGTGTGTACTCGAAAGACGATAGGCCTAAATGTGCAGCTGAAGATGAAGAGCTTGTGCAGATATCTGGGAGCTTTGTTGTTGCTAAAGATGCTTTGGCTGAGATTACATCAAGACTGAGAGTAAGAACTCTGCGTGATACAAATGCTGGAGAAGAACATGCTCCTATTGGCCCTGCGCACAGATTTGGTCCTTCTGGCAGCTTGCCTGTTAGAGGAATGCCACCACCACCTAGTGCAATTAGAGCTGGCAGCTCTGGTCGATATGATCCTCTAAAGGTTGGTAGACATGAATATGAACCAGAGAGATATCTAGTTCTGCCGGCAGCTTCTGGCTATCAAAGAGTCAACAGTGCTTTGGATAGTAGGATTCCAAATAATGCAGTGGATTCTTTTACTGGAATAGGGGGGAGCAACATTTCCCATATTGGAGAGGTATTTTTCGACACCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

572

Amino Acids

62.32

Weight (kDa)

8.67

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	48 - 102	7.4e-12	KH domain
KH_1	PF00013	154 - 220	9e-14	KH domain
KH_1	PF00013	309 - 358	2.2e-11	KH domain
KH_1	PF00013	390 - 458	1.3e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170
malus_domestica	MD09G1087900.v1.1 MD17G1076800.v1.1 MD17G1076900.v1.1 MD17G1077600.v1.1
prunus_persica	Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1
pyrus_communis	pycom09g01340 pycom17g07720
rosa_chinensis	RchiOBHm_Chr2g0162761 RchiOBHm_Chr2g0162821 RchiOBHm_Chr2g0162871
rosa_laevigata	RLG00000021358
rosa_multiflora	Rmu_co8424937.1_g000001 Rmu_sc0006129.1_g000028
rosa_roxburghii	Rroxscaffold_2G00087750
rosa_rugosa	Rorug02G0498900 Rorug02G0498900 Rorug02G0499000
rosa_samantha	Rh2AG564900 Rh2BG577600 Rh2CG547400 Rh2DG587500
rosa_wichuraiana	Rw2G046750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
Acc16I	TGCGCA	1 cut(s)	1443
AccBSI	CCGCTC	1 cut(s)	66
AccI	GTMKAC	3 cut(s)	148, 662, 1549
AccII	CGCG	1 cut(s)	102
AccIII	TCCGGA	1 cut(s)	620
AciI	CCGC	5 cut(s)	16, 66, 100, 890, 1087
AclWI	GGATC	2 cut(s)	878, 1526
AcsI	RAATTY	2 cut(s)	118, 303
AcuI	CTGAAG	4 cut(s)	96, 894, 1106, 1326
AcvI	CACGTG	1 cut(s)	545
AdeI	CACNNNGTG	2 cut(s)	359, 1499
AfaI	GTAC	2 cut(s)	1162, 1274
AfiI	CCNNNNNNNGG	4 cut(s)	704, 725, 830, 1478
AflIII	ACRYGT	2 cut(s)	542, 1054
AgsI	TTSAA	7 cut(s)	96, 309, 336, 382, 524, 905, 1130
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	4 cut(s)	745, 769, 1254, 1712
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	3 cut(s)	215, 533, 1072
AlwI	GGATC	2 cut(s)	878, 1526
AlwNI	CAGNNNCTG	2 cut(s)	245, 1595
Ama87I	CYCGRG	1 cut(s)	864
Aor13HI	TCCGGA	1 cut(s)	620
AoxI	GGCC	4 cut(s)	35, 785, 1289, 1435
ApeKI	GCWGC	7 cut(s)	362, 763, 1203, 1301, 1464, 1515, 1589
ApoI	RAATTY	2 cut(s)	118, 303
AseI	ATTAAT	1 cut(s)	1233
Asp700I	GAANNNNTTC	1 cut(s)	847
AspLEI	GCGC	1 cut(s)	1444
AspS9I	GGNCC	3 cut(s)	228, 1436, 1454
AsuC2I	CCSGG	2 cut(s)	226, 258
AsuHPI	GGTGA	1 cut(s)	893
AvaI	CYCGRG	1 cut(s)	864
AvaII	GGWCC	2 cut(s)	228, 1454
BanII	GRGCYC	3 cut(s)	263, 345, 754
BarI	GAAGNNNNNNTAC	2 cut(s)	480, 512
BbrPI	CACGTG	1 cut(s)	545
BbsI	GAAGAC	2 cut(s)	102, 488
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	7 cut(s)	349, 750, 1190, 1313, 1476, 1527, 1601
BccI	CCATC	2 cut(s)	823, 1195
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	4 cut(s)	747, 771, 1256, 1714
BciVI	GTATCC	1 cut(s)	589
BcnI	CCSGG	2 cut(s)	226, 258
BcoDI	GTCTC	3 cut(s)	215, 533, 1072
BfaI	CTAG	6 cut(s)	470, 500, 1173, 1191, 1497, 1577
BfmI	CTRYAG	1 cut(s)	567
BfuI	GTATCC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	8 cut(s)	67, 363, 764, 1204, 1302, 1465, 1516, 1590
BlsI	GCNGC	8 cut(s)	68, 364, 765, 1205, 1303, 1466, 1517, 1591
Bme1390I	CCNGG	6 cut(s)	226, 258, 747, 771, 1256, 1714
Bme18I	GGWCC	2 cut(s)	228, 1454
BmeT110I	CYCGRG	1 cut(s)	864
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	3 cut(s)	228, 1436, 1454
BmiI	GGNNCC	5 cut(s)	342, 351, 751, 798, 1012
BmrFI	CCNGG	6 cut(s)	226, 258, 747, 771, 1256, 1714
BmsI	GCATC	6 cut(s)	361, 682, 1021, 1043, 1215, 1345
BpiI	GAAGAC	2 cut(s)	102, 488
BpmI	CTGGAG	1 cut(s)	1434
BpuMI	CCSGG	2 cut(s)	226, 258
BsaAI	YACGTR	2 cut(s)	545, 686
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	5 cut(s)	345, 824, 1094, 1210, 1254
BsaWI	WCCGGW	2 cut(s)	620, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	1212, 1242
Bsc4I	CCNNNNNNNGG	4 cut(s)	704, 725, 830, 1478
Bse118I	RCCGGY	1 cut(s)	1585
Bse1I	ACTGG	2 cut(s)	89, 1666
BseAI	TCCGGA	1 cut(s)	620
BseBI	CCWGG	4 cut(s)	747, 771, 1256, 1714
BseDI	CCNNGG	5 cut(s)	345, 824, 1094, 1210, 1254
BseGI	GGATG	5 cut(s)	497, 520, 834, 1036, 1206
BseLI	CCNNNNNNNGG	4 cut(s)	704, 725, 830, 1478
BseMII	CTCAG	8 cut(s)	40, 137, 203, 276, 906, 1059, 1356, 1373
BseNI	ACTGG	2 cut(s)	89, 1666
BseRI	GAGGAG	1 cut(s)	882
BseXI	GCAGC	7 cut(s)	349, 750, 1190, 1313, 1476, 1527, 1601
BseYI	CCCAGC	1 cut(s)	944
BsgI	GTGCAG	4 cut(s)	65, 632, 1320, 1343
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	4 cut(s)	37, 787, 1291, 1437
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	864
BsiSI	CCGG	5 cut(s)	226, 257, 621, 629, 1586
BslFI	GGGAC	2 cut(s)	112, 906
BslI	CCNNNNNNNGG	4 cut(s)	704, 725, 830, 1478
BsmAI	GTCTC	3 cut(s)	215, 533, 1072
BsmFI	GGGAC	2 cut(s)	112, 906
BsmI	GAATGC	1 cut(s)	1488
BsnI	GGCC	4 cut(s)	37, 787, 1291, 1437
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	864
Bsp1286I	GDGCHC	4 cut(s)	263, 345, 649, 754
Bsp13I	TCCGGA	1 cut(s)	620
Bsp143I	GATC	5 cut(s)	409, 571, 883, 1164, 1531
Bsp19I	CCATGG	1 cut(s)	824
BspACI	CCGC	5 cut(s)	16, 66, 100, 890, 1087
BspANI	GGCC	4 cut(s)	37, 787, 1291, 1437
BspCNI	CTCAG	8 cut(s)	39, 136, 204, 275, 907, 1058, 1357, 1374
BspEI	TCCGGA	1 cut(s)	620
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	5 cut(s)	342, 351, 751, 798, 1012
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	2 cut(s)	878, 1526
BspQI	GCTCTTC	1 cut(s)	1308
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	1585
BsrI	ACTGG	2 cut(s)	89, 1666
BssAI	RCCGGY	1 cut(s)	1585
BssECI	CCNNGG	5 cut(s)	345, 824, 1094, 1210, 1254
BssMI	GATC	5 cut(s)	409, 571, 883, 1164, 1531
BssNAI	GTATAC	1 cut(s)	149
BssT1I	CCWWGG	4 cut(s)	345, 824, 1094, 1210
Bst1107I	GTATAC	1 cut(s)	149
Bst2UI	CCWGG	4 cut(s)	747, 771, 1256, 1714
Bst4CI	ACNGT	9 cut(s)	43, 108, 139, 241, 359, 651, 809, 993, 1616
Bst6I	CTCTTC	2 cut(s)	213, 1308
BstBAI	YACGTR	2 cut(s)	545, 686
BstC8I	GCNNGC	3 cut(s)	1469, 1513, 1587
BstDEI	CTNAG	8 cut(s)	26, 123, 212, 262, 915, 1045, 1365, 1382
BstDSI	CCRYGG	1 cut(s)	824
BstENI	CCTNNNNNAGG	1 cut(s)	1476
BstF5I	GGATG	5 cut(s)	497, 520, 834, 1036, 1206
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	1444
BstKTI	GATC	5 cut(s)	412, 574, 886, 1167, 1534
BstMAI	GTCTC	3 cut(s)	215, 533, 1072
BstMBI	GATC	5 cut(s)	409, 571, 883, 1164, 1531
BstMWI	GCNNNNNNNGC	8 cut(s)	43, 349, 371, 644, 820, 1079, 1355, 1508
BstNI	CCWGG	4 cut(s)	747, 771, 1256, 1714
BstNSI	RCATGY	1 cut(s)	1427
BstSCI	CCNGG	6 cut(s)	224, 256, 745, 769, 1254, 1712
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	7 cut(s)	349, 750, 1190, 1313, 1476, 1527, 1601
BstV2I	GAAGAC	2 cut(s)	102, 488
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	825
BstYI	RGATCY	1 cut(s)	409
BstZ17I	GTATAC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	589
BsuRI	GGCC	4 cut(s)	37, 787, 1291, 1437
BtgI	CCRYGG	1 cut(s)	824
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	5 cut(s)	497, 520, 834, 1036, 1206
BtsI	GCAGTG	1 cut(s)	1653
BtsIMutI	CAGTG	4 cut(s)	355, 647, 1621, 1653
Cac8I	GCNNGC	3 cut(s)	1469, 1513, 1587
CaiI	CAGNNNCTG	2 cut(s)	245, 1595
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	1444
Cfr10I	RCCGGY	1 cut(s)	1585
Cfr13I	GGNCC	3 cut(s)	228, 1436, 1454
CsiI	ACCWGGT	1 cut(s)	1712
Csp6I	GTAC	2 cut(s)	1161, 1273
CviAII	CATG	6 cut(s)	389, 825, 896, 1022, 1424, 1553
CviQI	GTAC	2 cut(s)	1161, 1273
DdeI	CTNAG	8 cut(s)	26, 123, 212, 262, 915, 1045, 1365, 1382
DpnI	GATC	5 cut(s)	411, 573, 885, 1166, 1533
DpnII	GATC	5 cut(s)	409, 571, 883, 1164, 1531
DraI	TTTAAA	1 cut(s)	52
DraIII	CACNNNGTG	2 cut(s)	359, 1499
Eam1104I	CTCTTC	2 cut(s)	213, 1308
EarI	CTCTTC	2 cut(s)	213, 1308
Eco130I	CCWWGG	4 cut(s)	345, 824, 1094, 1210
Eco147I	AGGCCT	1 cut(s)	1291
Eco24I	GRGCYC	3 cut(s)	263, 345, 754
Eco31I	GGTCTC	1 cut(s)	215
Eco32I	GATATC	3 cut(s)	618, 1329, 1574
Eco47I	GGWCC	2 cut(s)	228, 1454
Eco57I	CTGAAG	4 cut(s)	96, 894, 1106, 1326
Eco72I	CACGTG	1 cut(s)	545
Eco88I	CYCGRG	1 cut(s)	864
EcoNI	CCTNNNNNAGG	1 cut(s)	1476
EcoRII	CCWGG	4 cut(s)	745, 769, 1254, 1712
EcoRV	GATATC	3 cut(s)	618, 1329, 1574
EcoT14I	CCWWGG	4 cut(s)	345, 824, 1094, 1210
EcoT22I	ATGCAT	1 cut(s)	1036
EcoT38I	GRGCYC	3 cut(s)	263, 345, 754
ErhI	CCWWGG	4 cut(s)	345, 824, 1094, 1210
FaeI	CATG	6 cut(s)	392, 828, 899, 1025, 1427, 1556
FalI	AAGNNNNNCTT	4 cut(s)	329, 361, 360, 392
FaqI	GGGAC	2 cut(s)	112, 906
FatI	CATG	6 cut(s)	388, 824, 895, 1021, 1423, 1552
FauI	CCCGC	1 cut(s)	883
FblI	GTMKAC	3 cut(s)	148, 662, 1549
Fnu4HI	GCNGC	8 cut(s)	67, 363, 764, 1204, 1302, 1465, 1516, 1590
FokI	GGATG	5 cut(s)	504, 527, 841, 1043, 1193
FriOI	GRGCYC	3 cut(s)	263, 345, 754
Fsp4HI	GCNGC	8 cut(s)	67, 363, 764, 1204, 1302, 1465, 1516, 1590
FspBI	CTAG	6 cut(s)	470, 500, 1173, 1191, 1497, 1577
FspI	TGCGCA	1 cut(s)	1443
GlaI	GCGC	1 cut(s)	1443
GluI	GCNGC	8 cut(s)	67, 363, 764, 1204, 1302, 1465, 1516, 1590
GsaI	CCCAGC	1 cut(s)	948
GsuI	CTGGAG	1 cut(s)	1434
HaeIII	GGCC	4 cut(s)	37, 787, 1291, 1437
HapII	CCGG	5 cut(s)	226, 257, 621, 629, 1586
HhaI	GCGC	1 cut(s)	1444
Hin1II	CATG	6 cut(s)	392, 828, 899, 1025, 1427, 1556
Hin6I	GCGC	1 cut(s)	1442
HinP1I	GCGC	1 cut(s)	1442
HincII	GTYRAC	1 cut(s)	1612
HindII	GTYRAC	1 cut(s)	1612
HindIII	AAGCTT	1 cut(s)	906
HpaII	CCGG	5 cut(s)	226, 257, 621, 629, 1586
HphI	GGTGA	1 cut(s)	893
Hpy166II	GTNNAC	5 cut(s)	149, 663, 1273, 1550, 1612
Hpy188I	TCNGA	4 cut(s)	265, 678, 1048, 1153
Hpy188III	TCNNGA	7 cut(s)	114, 389, 621, 855, 1028, 1168, 1377
Hpy8I	GTNNAC	5 cut(s)	149, 663, 1273, 1550, 1612
HpyAV	CCTTC	3 cut(s)	810, 1239, 1467
HpyCH4III	ACNGT	9 cut(s)	43, 108, 139, 241, 359, 651, 809, 993, 1616
HpyCH4IV	ACGT	4 cut(s)	544, 633, 685, 1054
HpyF10VI	GCNNNNNNNGC	8 cut(s)	43, 349, 371, 644, 820, 1079, 1355, 1508
HpyF3I	CTNAG	8 cut(s)	26, 123, 212, 262, 915, 1045, 1365, 1382
HpySE526I	ACGT	4 cut(s)	544, 633, 685, 1054
Hsp92II	CATG	6 cut(s)	392, 828, 899, 1025, 1427, 1556
HspAI	GCGC	1 cut(s)	1442
Kpn2I	TCCGGA	1 cut(s)	620
KroI	GCCGGC	1 cut(s)	1585
KroNI	GCCGGC	1 cut(s)	1587
Kzo9I	GATC	5 cut(s)	409, 571, 883, 1164, 1531
LguI	GCTCTTC	1 cut(s)	1308
LmnI	GCTCC	8 cut(s)	63, 340, 349, 749, 1010, 1335, 1432, 1674
Lsp1109I	GCAGC	7 cut(s)	349, 750, 1190, 1313, 1476, 1527, 1601
LweI	GCATC	6 cut(s)	361, 682, 1021, 1043, 1215, 1345
MabI	ACCWGGT	1 cut(s)	1712
MaeI	CTAG	6 cut(s)	470, 500, 1173, 1191, 1497, 1577
MaeII	ACGT	4 cut(s)	544, 633, 685, 1054
MaeIII	GTNAC	3 cut(s)	424, 457, 993
MalI	GATC	5 cut(s)	411, 573, 885, 1166, 1533
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	5 cut(s)	409, 571, 883, 1164, 1531
MfeI	CAATTG	1 cut(s)	1107
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	4 cut(s)	263, 345, 649, 754
MlyI	GAGTC	3 cut(s)	282, 1037, 1617
Mph1103I	ATGCAT	1 cut(s)	1036
MroI	TCCGGA	1 cut(s)	620
MroNI	GCCGGC	1 cut(s)	1585
MroXI	GAANNNNTTC	1 cut(s)	847
MseI	TTAA	4 cut(s)	51, 876, 981, 1233
MslI	CAYNNNNRTG	1 cut(s)	1557
MspA1I	CMGCKG	2 cut(s)	914, 1304
MspI	CCGG	5 cut(s)	226, 257, 621, 629, 1586
MspR9I	CCNGG	6 cut(s)	226, 258, 747, 771, 1256, 1714
MunI	CAATTG	1 cut(s)	1107
Mva1269I	GAATGC	1 cut(s)	1488
MvaI	CCWGG	4 cut(s)	747, 771, 1256, 1714
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	8 cut(s)	43, 349, 371, 644, 820, 1079, 1355, 1508
NaeI	GCCGGC	1 cut(s)	1587
NciI	CCSGG	2 cut(s)	226, 258
NcoI	CCATGG	1 cut(s)	824
NdeII	GATC	5 cut(s)	409, 571, 883, 1164, 1531
NgoMIV	GCCGGC	1 cut(s)	1585
NlaIII	CATG	6 cut(s)	392, 828, 899, 1025, 1427, 1556
NlaIV	GGNNCC	5 cut(s)	342, 351, 751, 798, 1012
NmuCI	GTSAC	1 cut(s)	457
NsbI	TGCGCA	1 cut(s)	1443
NsiI	ATGCAT	1 cut(s)	1036
NspI	RCATGY	1 cut(s)	1427
PaeR7I	CTCGAG	1 cut(s)	864
PagI	TCATGA	1 cut(s)	388
PceI	AGGCCT	1 cut(s)	1291
PciSI	GCTCTTC	1 cut(s)	1308
PcsI	WCGNNNNNNNCGW	1 cut(s)	1060
PctI	GAATGC	1 cut(s)	1488
PdiI	GCCGGC	1 cut(s)	1587
PdmI	GAANNNNTTC	1 cut(s)	847
PfeI	GAWTC	7 cut(s)	248, 332, 679, 1060, 1090, 1633, 1652
PflFI	GACNNNGTC	1 cut(s)	226
PkrI	GCNGC	8 cut(s)	68, 364, 765, 1205, 1303, 1466, 1517, 1591
PleI	GAGTC	3 cut(s)	281, 1037, 1616
PmaCI	CACGTG	1 cut(s)	545
PmlI	CACGTG	1 cut(s)	545
PpsI	GAGTC	3 cut(s)	281, 1037, 1616
Ppu21I	YACGTR	2 cut(s)	545, 686
PshBI	ATTAAT	1 cut(s)	1233
PsiI	TTATAA	1 cut(s)	417
Psp6I	CCWGG	4 cut(s)	745, 769, 1254, 1712
PspCI	CACGTG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	4 cut(s)	745, 769, 1254, 1712
PspN4I	GGNNCC	5 cut(s)	342, 351, 751, 798, 1012
PspPI	GGNCC	3 cut(s)	228, 1436, 1454
PspXI	VCTCGAGB	1 cut(s)	864
PstI	CTGCAG	1 cut(s)	571
PstNI	CAGNNNCTG	2 cut(s)	245, 1595
PsuI	RGATCY	1 cut(s)	409
PsyI	GACNNNGTC	1 cut(s)	226
PvuII	CAGCTG	2 cut(s)	914, 1304
RsaI	GTAC	2 cut(s)	1162, 1274
RsaNI	GTAC	2 cut(s)	1161, 1273
RseI	CAYNNNNRTG	1 cut(s)	1557
SapI	GCTCTTC	1 cut(s)	1308
SaqAI	TTAA	4 cut(s)	51, 876, 981, 1233
SatI	GCNGC	8 cut(s)	67, 363, 764, 1204, 1302, 1465, 1516, 1590
Sau3AI	GATC	5 cut(s)	409, 571, 883, 1164, 1531
Sau96I	GGNCC	3 cut(s)	228, 1436, 1454
SchI	GAGTC	3 cut(s)	282, 1037, 1617
ScrFI	CCNGG	6 cut(s)	226, 258, 747, 771, 1256, 1714
SduI	GDGCHC	4 cut(s)	263, 345, 649, 754
SexAI	ACCWGGT	1 cut(s)	1712
SfaNI	GCATC	6 cut(s)	361, 682, 1021, 1043, 1215, 1345
SfcI	CTRYAG	1 cut(s)	567
Sfr274I	CTCGAG	1 cut(s)	864
SinI	GGWCC	2 cut(s)	228, 1454
SlaI	CTCGAG	1 cut(s)	864
SmiMI	CAYNNNNRTG	1 cut(s)	1557
SmlI	CTYRAG	1 cut(s)	864
SmoI	CTYRAG	1 cut(s)	864
SseBI	AGGCCT	1 cut(s)	1291
SsiI	CCGC	5 cut(s)	16, 66, 100, 890, 1087
SspI	AATATT	2 cut(s)	451, 1018
SspMI	CTAG	6 cut(s)	470, 500, 1173, 1191, 1497, 1577
StuI	AGGCCT	1 cut(s)	1291
StyD4I	CCNGG	6 cut(s)	224, 256, 745, 769, 1254, 1712
StyI	CCWWGG	4 cut(s)	345, 824, 1094, 1210
TaaI	ACNGT	9 cut(s)	43, 108, 139, 241, 359, 651, 809, 993, 1616
TaiI	ACGT	4 cut(s)	547, 636, 688, 1057
TaqI	TCGA	5 cut(s)	865, 1077, 1277, 1525, 1707
TatI	WGTACW	1 cut(s)	1272
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	7 cut(s)	248, 332, 679, 1060, 1090, 1633, 1652
Tru1I	TTAA	4 cut(s)	51, 876, 981, 1233
Tru9I	TTAA	4 cut(s)	51, 876, 981, 1233
TscAI	CASTG	4 cut(s)	362, 654, 1621, 1653
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	7 cut(s)	362, 763, 1203, 1301, 1464, 1515, 1589
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	9 cut(s)	342, 377, 618, 669, 728, 1010, 1326, 1569, 1575
TspRI	CASTG	4 cut(s)	362, 654, 1621, 1653
Tth111I	GACNNNGTC	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	228, 1454
VspI	ATTAAT	1 cut(s)	1233
XagI	CCTNNNNNAGG	1 cut(s)	1476
XapI	RAATTY	2 cut(s)	118, 303
XceI	RCATGY	1 cut(s)	1427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	822
XhoI	CTCGAG	1 cut(s)	864
XmiI	GTMKAC	3 cut(s)	148, 662, 1549
XmnI	GAANNNNTTC	1 cut(s)	847
XspI	CTAG	6 cut(s)	470, 500, 1173, 1191, 1497, 1577
Zsp2I	ATGCAT	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.