Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003954

Physical Location & Seq

Genomic Coordinates Reverse (-)

9785911 .. 9792605

Gene Structure 6695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGATTGGAACAAGCGGAATGTTCTCAGCCAACGGCCTACTGTGCAGTTTAAAAGAAAAGGGAGCGGCAACAAGAAAGGAAACTGGGATAATTTAAACCGCGAACAGTCTTCAGGAAATTCTCAGTCCCTCGATACTGTGTATCGTATACTTTGCCCCTCTAAAAAAATTGGTGGTGTAATTGGAAAAGGTGGTGGCATAATCAAATCCCTGAGAGAAGAGACCCGGTCCAAGATTACAGTTGCTGATTCTGTTCTGGGCTCAGATGAGAGAGTCATTATTATCTTTAGTTCCCCGATCAAAATTTCAAGGAAACAAAATAGGGATGAAGATTCAAAGGAGCCCTTGGAGCCACACTGTGCTGCCCAAGATGCACTTTTGAAAGTTCATGACAGGATCGTAGAGGAAGATCTTTATAATGGAGTTACATTTGATGATGATAATGAGAATATTGTTGTCACAAGACTTCTAGTTCCAAACAACTTGGTAGGATGTCTTCTAGGAAAGCGTGGGGATGTTATTCAAAGATTGCGAAGTGAGACACTTGCAAACATTCGGGTTCTTCCTACAGATCAGCTTCCTACTTGTGCTATGGATACTGATGAATTGGTGCAGATATCTGGAAAACCGGATGTGGCAAAAAGAGCACTTTATGAAGTGTCTACTCTATTGCATCAGAATCCACGTAAGGATAAACCTCCTTTGGGATCGGCTATACCTTTTGGGGGTCAGGGGTTTAATCTGCCAGGAGCCCCAAATATGCTGCCACCTGGAAATCCAATGTGGCCTAATAGGGAACCTTCCCACAGTATGCCACCAATGCCATGGATAGGAGAATATGGAAATCATTCCTCTAGATATGCTCGAGGAGGTTTTAATGGTGATCCTGTGGGGCATGGGGTTGAAGCTTCAGCTGAGTTTTATATAAAGATTTTGTGCTCAGCTGGGAAAATTGGTGGGGTTATTGGCAAGGGGGTTTTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

328

Amino Acids

35.92

Weight (kDa)

8.99

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	48 - 103	7.2e-12	KH domain
KH_1	PF00013	154 - 220	2.7e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170
malus_domestica	MD09G1087900.v1.1 MD17G1076800.v1.1 MD17G1076900.v1.1 MD17G1077600.v1.1
prunus_persica	Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1
pyrus_communis	pycom09g01340 pycom17g07720
rosa_chinensis	RchiOBHm_Chr2g0162761 RchiOBHm_Chr2g0162821 RchiOBHm_Chr2g0162871
rosa_laevigata	RLG00000021358
rosa_multiflora	Rmu_co8424937.1_g000001 Rmu_sc0006129.1_g000028
rosa_roxburghii	Rroxscaffold_2G00087750
rosa_rugosa	Rorug02G0498900 Rorug02G0498900 Rorug02G0499000
rosa_samantha	Rh2AG564900 Rh2BG577600 Rh2CG547400 Rh2DG587500
rosa_wichuraiana	Rw2G046750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AccBSI	CCGCTC	1 cut(s)	66
AccI	GTMKAC	2 cut(s)	148, 662
AccII	CGCG	1 cut(s)	102
AciI	CCGC	3 cut(s)	16, 66, 100
AclWI	GGATC	3 cut(s)	404, 715, 878
AcsI	RAATTY	2 cut(s)	118, 303
AcuI	CTGAAG	2 cut(s)	96, 894
AdeI	CACNNNGTG	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	704, 725, 830
AgsI	TTSAA	5 cut(s)	309, 336, 382, 524, 905
AjnI	CCWGG	2 cut(s)	745, 769
AluBI	AGCT	4 cut(s)	577, 908, 914, 944
AluI	AGCT	4 cut(s)	577, 908, 914, 944
Alw21I	GWGCWC	2 cut(s)	649, 941
Alw26I	GTCTC	2 cut(s)	215, 533
AlwI	GGATC	3 cut(s)	404, 715, 878
AlwNI	CAGNNNCTG	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	864
AoxI	GGCC	2 cut(s)	35, 785
ApeKI	GCWGC	2 cut(s)	362, 763
ApoI	RAATTY	2 cut(s)	118, 303
Asp700I	GAANNNNTTC	1 cut(s)	847
AspS9I	GGNCC	1 cut(s)	228
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	893
AvaI	CYCGRG	1 cut(s)	864
AvaII	GGWCC	1 cut(s)	228
BanII	GRGCYC	3 cut(s)	263, 345, 754
BarI	GAAGNNNNNNTAC	2 cut(s)	480, 512
BbsI	GAAGAC	2 cut(s)	102, 488
Bbv12I	GWGCWC	2 cut(s)	649, 941
BbvI	GCAGC	2 cut(s)	349, 750
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	747, 771
BciVI	GTATCC	1 cut(s)	589
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	215, 533
BfaI	CTAG	3 cut(s)	470, 500, 855
BfmI	CTRYAG	1 cut(s)	567
BfuI	GTATCC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	3 cut(s)	67, 363, 764
BlpI	GCTNAGC	1 cut(s)	940
BlsI	GCNGC	3 cut(s)	68, 364, 765
Bme1390I	CCNGG	3 cut(s)	226, 747, 771
Bme18I	GGWCC	1 cut(s)	228
BmeT110I	CYCGRG	1 cut(s)	864
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	4 cut(s)	342, 351, 751, 798
BmrFI	CCNGG	3 cut(s)	226, 747, 771
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	361, 682
BmuI	ACTGGG	1 cut(s)	94
BpiI	GAAGAC	2 cut(s)	102, 488
Bpu1102I	GCTNAGC	1 cut(s)	940
BpuMI	CCSGG	1 cut(s)	226
BsaAI	YACGTR	1 cut(s)	686
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	345, 824
BsaWI	WCCGGW	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	3 cut(s)	704, 725, 830
Bse1I	ACTGG	1 cut(s)	89
BseBI	CCWGG	2 cut(s)	747, 771
BseDI	CCNNGG	2 cut(s)	345, 824
BseGI	GGATG	4 cut(s)	331, 497, 520, 637
BseLI	CCNNNNNNNGG	3 cut(s)	704, 725, 830
BseMII	CTCAG	6 cut(s)	40, 137, 203, 276, 906, 954
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	882
BseXI	GCAGC	2 cut(s)	349, 750
BseYI	CCCAGC	1 cut(s)	944
BsgI	GTGCAG	2 cut(s)	65, 632
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	37, 787
BsiHKAI	GWGCWC	2 cut(s)	649, 941
BsiHKCI	CYCGRG	1 cut(s)	864
BsiSI	CCGG	2 cut(s)	226, 629
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	3 cut(s)	704, 725, 830
BsmAI	GTCTC	2 cut(s)	215, 533
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	37, 787
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	864
Bsp1286I	GDGCHC	5 cut(s)	263, 345, 649, 754, 941
Bsp143I	GATC	6 cut(s)	297, 396, 409, 571, 707, 883
Bsp1720I	GCTNAGC	1 cut(s)	940
Bsp19I	CCATGG	1 cut(s)	824
BspACI	CCGC	3 cut(s)	16, 66, 100
BspANI	GGCC	2 cut(s)	37, 787
BspCNI	CTCAG	6 cut(s)	39, 136, 204, 275, 907, 953
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	4 cut(s)	342, 351, 751, 798
BspPI	GGATC	3 cut(s)	404, 715, 878
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	345, 824
BssMI	GATC	6 cut(s)	297, 396, 409, 571, 707, 883
BssNAI	GTATAC	1 cut(s)	149
BssT1I	CCWWGG	2 cut(s)	345, 824
Bst1107I	GTATAC	1 cut(s)	149
Bst2UI	CCWGG	2 cut(s)	747, 771
Bst4CI	ACNGT	6 cut(s)	43, 108, 139, 241, 359, 809
Bst6I	CTCTTC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	686
BstDEI	CTNAG	6 cut(s)	26, 123, 212, 262, 915, 940
BstDSI	CCRYGG	1 cut(s)	824
BstF5I	GGATG	4 cut(s)	331, 497, 520, 637
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	6 cut(s)	300, 399, 412, 574, 710, 886
BstMAI	GTCTC	2 cut(s)	215, 533
BstMBI	GATC	6 cut(s)	297, 396, 409, 571, 707, 883
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 349, 371, 644, 820
BstNI	CCWGG	2 cut(s)	747, 771
BstSCI	CCNGG	3 cut(s)	224, 745, 769
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	349, 750
BstV2I	GAAGAC	2 cut(s)	102, 488
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	825
BstYI	RGATCY	1 cut(s)	409
BstZ17I	GTATAC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	589
BsuRI	GGCC	2 cut(s)	37, 787
BtgI	CCRYGG	1 cut(s)	824
BtsCI	GGATG	4 cut(s)	331, 497, 520, 637
BtsIMutI	CAGTG	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	245
CciI	TCATGA	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	228
CviAII	CATG	3 cut(s)	389, 825, 896
DdeI	CTNAG	6 cut(s)	26, 123, 212, 262, 915, 940
DpnI	GATC	6 cut(s)	299, 398, 411, 573, 709, 885
DpnII	GATC	6 cut(s)	297, 396, 409, 571, 707, 883
DraI	TTTAAA	2 cut(s)	52, 96
DraIII	CACNNNGTG	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	345, 824
Eco24I	GRGCYC	3 cut(s)	263, 345, 754
Eco31I	GGTCTC	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	96, 894
Eco88I	CYCGRG	1 cut(s)	864
EcoRII	CCWGG	2 cut(s)	745, 769
EcoRV	GATATC	1 cut(s)	618
EcoT14I	CCWWGG	2 cut(s)	345, 824
EcoT38I	GRGCYC	3 cut(s)	263, 345, 754
ErhI	CCWWGG	2 cut(s)	345, 824
FaeI	CATG	3 cut(s)	392, 828, 899
FalI	AAGNNNNNCTT	4 cut(s)	329, 361, 360, 392
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	3 cut(s)	388, 824, 895
FblI	GTMKAC	2 cut(s)	148, 662
Fnu4HI	GCNGC	3 cut(s)	67, 363, 764
FokI	GGATG	4 cut(s)	338, 504, 527, 644
FriOI	GRGCYC	3 cut(s)	263, 345, 754
Fsp4HI	GCNGC	3 cut(s)	67, 363, 764
FspBI	CTAG	3 cut(s)	470, 500, 855
GluI	GCNGC	3 cut(s)	67, 363, 764
GsaI	CCCAGC	1 cut(s)	948
HaeIII	GGCC	2 cut(s)	37, 787
HapII	CCGG	2 cut(s)	226, 629
Hin1II	CATG	3 cut(s)	392, 828, 899
HindIII	AAGCTT	1 cut(s)	906
HinfI	GANTC	4 cut(s)	248, 273, 332, 679
HpaII	CCGG	2 cut(s)	226, 629
HphI	GGTGA	1 cut(s)	893
Hpy166II	GTNNAC	2 cut(s)	149, 663
Hpy188I	TCNGA	2 cut(s)	265, 678
Hpy188III	TCNNGA	4 cut(s)	114, 389, 621, 855
Hpy8I	GTNNAC	2 cut(s)	149, 663
HpyAV	CCTTC	1 cut(s)	810
HpyCH4III	ACNGT	6 cut(s)	43, 108, 139, 241, 359, 809
HpyCH4IV	ACGT	1 cut(s)	685
HpyCH4V	TGCA	5 cut(s)	46, 374, 548, 613, 673
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 349, 371, 644, 820
HpyF3I	CTNAG	6 cut(s)	26, 123, 212, 262, 915, 940
HpySE526I	ACGT	1 cut(s)	685
Hsp92II	CATG	3 cut(s)	392, 828, 899
Kzo9I	GATC	6 cut(s)	297, 396, 409, 571, 707, 883
LmnI	GCTCC	4 cut(s)	63, 340, 349, 749
Lsp1109I	GCAGC	2 cut(s)	349, 750
LweI	GCATC	2 cut(s)	361, 682
MaeI	CTAG	3 cut(s)	470, 500, 855
MaeII	ACGT	1 cut(s)	685
MaeIII	GTNAC	2 cut(s)	424, 457
MalI	GATC	6 cut(s)	299, 398, 411, 573, 709, 885
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	6 cut(s)	297, 396, 409, 571, 707, 883
MboII	GAAGA	6 cut(s)	102, 230, 341, 419, 488, 554
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	5 cut(s)	263, 345, 649, 754, 941
MluCI	AATT	7 cut(s)	91, 118, 168, 180, 303, 605, 951
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	7 cut(s)	140, 169, 397, 708, 860, 862, 863
MroXI	GAANNNNTTC	1 cut(s)	847
MseI	TTAA	5 cut(s)	51, 95, 738, 876, 980
MspA1I	CMGCKG	2 cut(s)	914, 944
MspI	CCGG	2 cut(s)	226, 629
MspR9I	CCNGG	3 cut(s)	226, 747, 771
MvaI	CCWGG	2 cut(s)	747, 771
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	5 cut(s)	43, 349, 371, 644, 820
NciI	CCSGG	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	824
NdeII	GATC	6 cut(s)	297, 396, 409, 571, 707, 883
NlaIII	CATG	3 cut(s)	392, 828, 899
NlaIV	GGNNCC	4 cut(s)	342, 351, 751, 798
NmuCI	GTSAC	1 cut(s)	457
PaeR7I	CTCGAG	1 cut(s)	864
PagI	TCATGA	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	847
PfeI	GAWTC	3 cut(s)	248, 332, 679
PflFI	GACNNNGTC	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	68, 364, 765
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	686
PsiI	TTATAA	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	745, 769
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	2 cut(s)	745, 769
PspN4I	GGNNCC	4 cut(s)	342, 351, 751, 798
PspPI	GGNCC	1 cut(s)	228
PspXI	VCTCGAGB	1 cut(s)	864
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	409
PsyI	GACNNNGTC	1 cut(s)	226
PvuII	CAGCTG	2 cut(s)	914, 944
SaqAI	TTAA	5 cut(s)	51, 95, 738, 876, 980
SatI	GCNGC	3 cut(s)	67, 363, 764
Sau3AI	GATC	6 cut(s)	297, 396, 409, 571, 707, 883
Sau96I	GGNCC	1 cut(s)	228
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	3 cut(s)	226, 747, 771
SduI	GDGCHC	5 cut(s)	263, 345, 649, 754, 941
SfaNI	GCATC	2 cut(s)	361, 682
SfcI	CTRYAG	1 cut(s)	567
Sfr274I	CTCGAG	1 cut(s)	864
SinI	GGWCC	1 cut(s)	228
SlaI	CTCGAG	1 cut(s)	864
SmlI	CTYRAG	1 cut(s)	864
SmoI	CTYRAG	1 cut(s)	864
Sse9I	AATT	7 cut(s)	91, 118, 168, 180, 303, 605, 951
SsiI	CCGC	3 cut(s)	16, 66, 100
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	3 cut(s)	470, 500, 855
StyD4I	CCNGG	3 cut(s)	224, 745, 769
StyI	CCWWGG	2 cut(s)	345, 824
TaaI	ACNGT	6 cut(s)	43, 108, 139, 241, 359, 809
TaiI	ACGT	1 cut(s)	688
TaqI	TCGA	2 cut(s)	132, 865
TasI	AATT	7 cut(s)	91, 118, 168, 180, 303, 605, 951
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	3 cut(s)	248, 332, 679
Tru1I	TTAA	5 cut(s)	51, 95, 738, 876, 980
Tru9I	TTAA	5 cut(s)	51, 95, 738, 876, 980
TscAI	CASTG	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	2 cut(s)	362, 763
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	4 cut(s)	342, 377, 618, 669
TspRI	CASTG	1 cut(s)	362
Tth111I	GACNNNGTC	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	2 cut(s)	118, 303
XbaI	TCTAGA	1 cut(s)	854
XcmI	CCANNNNNNNNNTGG	1 cut(s)	822
XhoI	CTCGAG	1 cut(s)	864
XmiI	GTMKAC	2 cut(s)	148, 662
XmnI	GAANNNNTTC	1 cut(s)	847
XspI	CTAG	3 cut(s)	470, 500, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.