Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003954

Physical Location & Seq

Genomic Coordinates Forward (+)

74450484 .. 74456945

Gene Structure 6462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021358

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGGGCCGTTGCCCGCTCTCTTGCTCTGTAACTCGGAGCAAAGTTTCTCAATTGCGTTCAATTCTCTCCTCTCTCTCTCTCTTTCTGCTCGCAGATGGGGAGCACCACTCGACCCAGCAAACGGCGACCATCACTGAGTCCAATTCCGACTCCTCTCTCTCGCTCCGGCCTCAAGTGCTCGAAGCGGAGTCTCTACTAATCGCAGCTGCTCGGCGAGCTGTTTCTGGGAGTATTATGGATTGGAACAAGCGGAATGTTCTCAGCCAACGGCCTACTGTGCAGTTTAAAAGAAAAGGGAGCAGCAACAAGAAAGGAAACTGGAATAATTCAAACTGCGAACAGTCTTCAGGAAATTCTCAGTCCCTCGATACTGTGTATCGTATACTTTGCCCCTCTAAAAAAATTGGTGGTGTAATTGGAAAAGGTGGTGGCATAATCAAATCCCTGAGAGAAGAGACCCGGTCCAAGATTACAGTTGCTGATTCTGTTCTGGGCTCAGATGAGAGAGTAATTATTATCTTTAGTTCCCCGATCAAAATTTCGAGGAAACAAAATAGTGATGAAGATTCAAAGGAGCCCTTGGAGCCACACTGTGCTGCCCAAGATGCACTTTTGAAAGTTCATGACAGGATCGTAGAGGAAGATCTTTATAATGGAGTTACATTTGATGATGATAATGAGAATATTGTTGTCACAAGACTTCTTGTTCCAAACAACTTGGTAGGATGTCTTCTAGGCAAGCGTGGGGATGTTATTCAAAGATTGCGAAGTGAGACACGTGCAAACATTCGGGTTCTTCCTGCAGATCAGCTTCCTACTTGTGCTATGGATACTGATGAATTGGTGCAGATATCTGGAAAACCGGACGTGGCAAAAAGAGCACTTTATGAAGTGTCTACTCTATTGCATCAGAATCCACGTAAGGATAAACCTCCTTTGGAATCGGCTATACCTTTTGGGGGTCGGGGGTTTCATCTGCCAGGAGGCCCAAATATGCTGCCACCTGGCAATCCAATGTGGCCTAATAGGGAACCTTCCCACAGTATGCCACCAATGCCTTGGATAGGAGAATATGGAAATCATTCCTCTGGATATGCTCGAGGAGGTTTTAATGGTGATCCTGCAGGGCATGGGGTTGAAGCTTCAGCTGAGTTTTATATAAAGATTTTGTGTTCAGCTGGGAAAATTGGTGGGGTTATTGGCAAGGGGGGTTTTAATGTGAAACAGTTACAAGAGGAAACAGGAGCCAATATTCATGTTCAGGATGCATCAACAGACTCAGAAGAACGTGTGATTCGTGTCTCTGCTTTCGAGGCTTTGCGGAATCCGAGGTCGCAAACAATTGAGGCAATTCTTCAGCTTCAAAACAAAGCAAGTGAATTATCTGATAAAGGTATGATCACGACTAGGCTTCTTGTTCCATCGAGTAAAGTTGGCTGCATCCTTGGACAAGGAGGGCAAGTTATTAATGAGATGAGGAGGAGAACCCAGGCAGATATTCGTGTGTACTCGAAAGACGATAGGCCTAAGTGTGCAGCTGAAGATGAAGAGCTTGTGCAGATATCTGGGAACTTTGTTGTTGCTAAAGATGCTTTGGCTGAGATTACATCAAGACTGAGAGTAAGAACTCTGCGTGATACAAATTCTGGAGAAGAACATGCTCCTATTGGTGCTGCGCACAGATTTGGTCCTCCTGGCAGCTTGCCTGTTAGAGGAATGCCACCACCACCTAGTGCAATTAGAGCTGGCAGCTCTGGTCGATATGATCCTCTAAAGGTTGGTACACATGAATATGAACCAGAGAGATATCCAGTTCTGCCGGCTGCTTCTGGCTATCGAAGAGTCAACAGTGCTTTGGATAGTAGGATTCCAAATAATGCAGTGGATTCTTTTACTGGAATAGTGGGGAGCAACATTTCCCATATTGGAGAGATTTCAGGACCAAGAGTGAAATTCCAAGACTCCCAAAGTAGTCACCCTGAACATGTTGCTGAGATCCGTGGTCCTGATCAGTTGAATGCAGCACAGAATATCCTTCAGGCCCTCATGGCTTCTATTGGTCAAAATGCAAGTGCTCAGCCAAGTTCCTACAACGCAAATATTCGGCAAGGCTCCTACCACAACATCTCTGATCACCAAAGCCCGTATCATATCAATGCTCCAAGAAGCCCACACCGAATGAATGCTCCACAAAGTCCCTATCGAGTAAATGCGCAGCAAAGTCCATACCAAATTAAGGCTCAGCAAAGCCCCTACCAAACCAATACTCATCAAAGCCCCTACCATATCAATGCTCATCAAGGCCCATACCAAATCAACGCTCAGCAAAGCTCTTATCAGTTGAGTGCTCCGCAAGGATCAAACCCCAACATCAATGCTCCACAAGGTGCATACCGTAACCTTAACTCACAGGAAGCTACGTACCATAACCTTAACTCACAGCAAGGTGCATATCATAACCTTAACTCACAGCAAGGTGCCTACCAGTACCGACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

833

Amino Acids

90.78

Weight (kDa)

8.92

Isoelectric Point (pI)

58.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	126 - 180	3.8e-11	KH domain
KH_1	PF00013	232 - 298	1.5e-13	KH domain
KH_1	PF00013	387 - 436	3.6e-11	KH domain
KH_1	PF00013	468 - 536	2.6e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170
malus_domestica	MD09G1087900.v1.1 MD17G1076800.v1.1 MD17G1076900.v1.1 MD17G1077600.v1.1
prunus_persica	Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1
pyrus_communis	pycom09g01340 pycom17g07720
rosa_chinensis	RchiOBHm_Chr2g0162761 RchiOBHm_Chr2g0162821 RchiOBHm_Chr2g0162871
rosa_laevigata	RLG00000021358
rosa_multiflora	Rmu_co8424937.1_g000001 Rmu_sc0006129.1_g000028
rosa_roxburghii	Rroxscaffold_2G00087750
rosa_rugosa	Rorug02G0498900 Rorug02G0498900 Rorug02G0499000
rosa_samantha	Rh2AG564900 Rh2BG577600 Rh2CG547400 Rh2DG587500
rosa_wichuraiana	Rw2G046750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
Acc16I	TGCGCA	2 cut(s)	1677, 2214
AccB1I	GGYRCC	1 cut(s)	2477
AccBSI	CCGCTC	1 cut(s)	16
AccI	GTMKAC	2 cut(s)	382, 896
AciI	CCGC	5 cut(s)	14, 185, 250, 1321, 2351
AclWI	GGATC	5 cut(s)	638, 1112, 1760, 1990, 2365
AcsI	RAATTY	4 cut(s)	352, 537, 1642, 1952
AcuI	CTGAAG	5 cut(s)	330, 1128, 1340, 1560, 2021
AcvI	CACGTG	1 cut(s)	779
AdeI	CACNNNGTG	3 cut(s)	593, 1733, 2387
AfaI	GTAC	4 cut(s)	1508, 1783, 2423, 2489
AfiI	CCNNNNNNNGG	5 cut(s)	121, 959, 1064, 1712, 2236
AflIII	ACRYGT	3 cut(s)	776, 1288, 1984
AgsI	TTSAA	8 cut(s)	60, 330, 570, 616, 758, 1139, 1364, 2017
AjiI	CACGTC	1 cut(s)	868
AjnI	CCWGG	4 cut(s)	979, 1003, 1488, 1693
Alw21I	GWGCWC	5 cut(s)	105, 180, 883, 2077, 2350
Alw26I	GTCTC	4 cut(s)	195, 449, 767, 1306
AlwI	GGATC	5 cut(s)	638, 1112, 1760, 1990, 2365
AlwNI	CAGNNNCTG	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	1098
AoxI	GGCC	8 cut(s)	4, 167, 269, 985, 1019, 1523, 2040, 2302
ApoI	RAATTY	4 cut(s)	352, 537, 1642, 1952
AseI	ATTAAT	1 cut(s)	1467
Asp700I	GAANNNNTTC	1 cut(s)	1081
AspLEI	GCGC	2 cut(s)	1678, 2215
AspS9I	GGNCC	8 cut(s)	4, 462, 986, 1688, 1940, 2003, 2041, 2303
AsuC2I	CCSGG	1 cut(s)	460
AsuHPI	GGTGA	3 cut(s)	1127, 1967, 2126
AvaI	CYCGRG	1 cut(s)	1098
AvaII	GGWCC	4 cut(s)	462, 1688, 1940, 2003
BanI	GGYRCC	1 cut(s)	2477
BanII	GRGCYC	2 cut(s)	497, 579
BarI	GAAGNNNNNNTAC	2 cut(s)	714, 746
BbrPI	CACGTG	1 cut(s)	779
BbsI	GAAGAC	2 cut(s)	336, 722
Bbv12I	GWGCWC	5 cut(s)	105, 180, 883, 2077, 2350
BccI	CCATC	3 cut(s)	89, 137, 1429
BceAI	ACGGC	2 cut(s)	138, 284
BciT130I	CCWGG	4 cut(s)	981, 1005, 1490, 1695
BciVI	GTATCC	1 cut(s)	823
BclI	TGATCA	3 cut(s)	1398, 2008, 2131
BcnI	CCSGG	1 cut(s)	460
BcoDI	GTCTC	4 cut(s)	195, 449, 767, 1306
BfaI	CTAG	3 cut(s)	734, 1407, 1731
BfmI	CTRYAG	2 cut(s)	801, 1122
BfuI	GTATCC	1 cut(s)	823
BglI	GCCNNNNNGGC	1 cut(s)	2048
BglII	AGATCT	1 cut(s)	643
BlpI	GCTNAGC	3 cut(s)	2076, 2241, 2322
Bme1390I	CCNGG	5 cut(s)	460, 981, 1005, 1490, 1695
Bme18I	GGWCC	4 cut(s)	462, 1688, 1940, 2003
BmeT110I	CYCGRG	1 cut(s)	1098
BmgBI	CACGTC	1 cut(s)	868
BmgT120I	GGNCC	8 cut(s)	4, 462, 986, 1688, 1940, 2003, 2041, 2303
BmiI	GGNNCC	6 cut(s)	576, 585, 1032, 1246, 2113, 2479
BmrFI	CCNGG	5 cut(s)	460, 981, 1005, 1490, 1695
BmsI	GCATC	6 cut(s)	595, 916, 1255, 1277, 1449, 1579
BpiI	GAAGAC	2 cut(s)	336, 722
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpmI	CTGGAG	1 cut(s)	1668
Bpu1102I	GCTNAGC	3 cut(s)	2076, 2241, 2322
BpuEI	CTTGAG	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	460
BsaAI	YACGTR	3 cut(s)	779, 920, 2421
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	6 cut(s)	579, 1058, 1328, 1444, 1488, 1999
BsaWI	WCCGGW	1 cut(s)	862
BsaXI	ACNNNNNCTCC	2 cut(s)	1446, 1476
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 959, 1064, 1712, 2236
Bse118I	RCCGGY	1 cut(s)	1819
Bse1I	ACTGG	4 cut(s)	323, 1811, 1900, 2485
BseBI	CCWGG	4 cut(s)	981, 1005, 1490, 1695
BseDI	CCNNGG	6 cut(s)	579, 1058, 1328, 1444, 1488, 1999
BseGI	GGATG	4 cut(s)	731, 754, 1270, 1440
BseLI	CCNNNNNNNGG	5 cut(s)	121, 959, 1064, 1712, 2236
BseNI	ACTGG	4 cut(s)	323, 1811, 1900, 2485
BseRI	GAGGAG	5 cut(s)	58, 142, 1116, 1492, 1495
BseYI	CCCAGC	2 cut(s)	114, 1178
BsgI	GTGCAG	4 cut(s)	299, 866, 1554, 1577
BshFI	GGCC	8 cut(s)	6, 169, 271, 987, 1021, 1525, 2042, 2304
BshNI	GGYRCC	1 cut(s)	2477
BsiHKAI	GWGCWC	5 cut(s)	105, 180, 883, 2077, 2350
BsiHKCI	CYCGRG	1 cut(s)	1098
BsiSI	CCGG	4 cut(s)	166, 460, 863, 1820
BslFI	GGGAC	2 cut(s)	346, 2181
BslI	CCNNNNNNNGG	5 cut(s)	121, 959, 1064, 1712, 2236
BsmAI	GTCTC	4 cut(s)	195, 449, 767, 1306
BsmFI	GGGAC	2 cut(s)	346, 2181
BsmI	GAATGC	3 cut(s)	1722, 2023, 2188
BsnI	GGCC	8 cut(s)	6, 169, 271, 987, 1021, 1525, 2042, 2304
Bso31I	GGTCTC	1 cut(s)	449
BsoBI	CYCGRG	1 cut(s)	1098
Bsp1286I	GDGCHC	7 cut(s)	105, 180, 497, 579, 883, 2077, 2350
Bsp1720I	GCTNAGC	3 cut(s)	2076, 2241, 2322
BspACI	CCGC	5 cut(s)	14, 185, 250, 1321, 2351
BspANI	GGCC	8 cut(s)	6, 169, 271, 987, 1021, 1525, 2042, 2304
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	6 cut(s)	576, 585, 1032, 1246, 2113, 2479
BspMAI	CTGCAG	2 cut(s)	805, 1126
BspPI	GGATC	5 cut(s)	638, 1112, 1760, 1990, 2365
BspQI	GCTCTTC	1 cut(s)	1542
BspT107I	GGYRCC	1 cut(s)	2477
BspTNI	GGTCTC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	1819
BsrI	ACTGG	4 cut(s)	323, 1811, 1900, 2485
BssAI	RCCGGY	1 cut(s)	1819
BssECI	CCNNGG	6 cut(s)	579, 1058, 1328, 1444, 1488, 1999
BssNAI	GTATAC	1 cut(s)	383
BssT1I	CCWWGG	3 cut(s)	579, 1058, 1444
Bst1107I	GTATAC	1 cut(s)	383
Bst2UI	CCWGG	4 cut(s)	981, 1005, 1490, 1695
Bst4CI	ACNGT	9 cut(s)	277, 342, 373, 475, 593, 1043, 1227, 1850, 2396
Bst6I	CTCTTC	3 cut(s)	447, 1542, 1834
BstBAI	YACGTR	3 cut(s)	779, 920, 2421
BstC8I	GCNNGC	7 cut(s)	14, 90, 216, 740, 1703, 1747, 1821
BstDSI	CCRYGG	1 cut(s)	1999
BstENI	CCTNNNNNAGG	2 cut(s)	1062, 1710
BstF5I	GGATG	4 cut(s)	731, 754, 1270, 1440
BstHHI	GCGC	2 cut(s)	1678, 2215
BstMAI	GTCTC	4 cut(s)	195, 449, 767, 1306
BstNI	CCWGG	4 cut(s)	981, 1005, 1490, 1695
BstNSI	RCATGY	2 cut(s)	1661, 1988
BstSCI	CCNGG	5 cut(s)	458, 979, 1003, 1488, 1693
BstSFI	CTRYAG	2 cut(s)	801, 1122
BstSNI	TACGTA	1 cut(s)	2421
BstV2I	GAAGAC	2 cut(s)	336, 722
BstX2I	RGATCY	2 cut(s)	643, 1995
BstXI	CCANNNNNNTGG	1 cut(s)	1059
BstYI	RGATCY	2 cut(s)	643, 1995
BstZ17I	GTATAC	1 cut(s)	383
BsuI	GTATCC	1 cut(s)	823
BsuRI	GGCC	8 cut(s)	6, 169, 271, 987, 1021, 1525, 2042, 2304
BtgI	CCRYGG	1 cut(s)	1999
BtrI	CACGTC	1 cut(s)	868
BtsCI	GGATG	4 cut(s)	731, 754, 1270, 1440
BtsI	GCAGTG	1 cut(s)	1887
BtsIMutI	CAGTG	4 cut(s)	132, 589, 1855, 1887
Cac8I	GCNNGC	7 cut(s)	14, 90, 216, 740, 1703, 1747, 1821
CaiI	CAGNNNCTG	1 cut(s)	479
CciI	TCATGA	1 cut(s)	622
CfoI	GCGC	2 cut(s)	1678, 2215
Cfr10I	RCCGGY	1 cut(s)	1819
Cfr13I	GGNCC	8 cut(s)	4, 462, 986, 1688, 1940, 2003, 2041, 2303
Csp6I	GTAC	4 cut(s)	1507, 1782, 2422, 2488
CviAII	CATG	7 cut(s)	623, 1130, 1256, 1658, 1787, 1985, 2047
CviQI	GTAC	4 cut(s)	1507, 1782, 2422, 2488
DraI	TTTAAA	1 cut(s)	286
DraIII	CACNNNGTG	3 cut(s)	593, 1733, 2387
Eam1104I	CTCTTC	3 cut(s)	447, 1542, 1834
EarI	CTCTTC	3 cut(s)	447, 1542, 1834
Eco105I	TACGTA	1 cut(s)	2421
Eco130I	CCWWGG	3 cut(s)	579, 1058, 1444
Eco147I	AGGCCT	1 cut(s)	1525
Eco24I	GRGCYC	2 cut(s)	497, 579
Eco31I	GGTCTC	1 cut(s)	449
Eco32I	GATATC	3 cut(s)	852, 1563, 1808
Eco47I	GGWCC	4 cut(s)	462, 1688, 1940, 2003
Eco57I	CTGAAG	5 cut(s)	330, 1128, 1340, 1560, 2021
Eco72I	CACGTG	1 cut(s)	779
Eco88I	CYCGRG	1 cut(s)	1098
EcoNI	CCTNNNNNAGG	2 cut(s)	1062, 1710
EcoO109I	RGGNCCY	1 cut(s)	2041
EcoRII	CCWGG	4 cut(s)	979, 1003, 1488, 1693
EcoRV	GATATC	3 cut(s)	852, 1563, 1808
EcoT14I	CCWWGG	3 cut(s)	579, 1058, 1444
EcoT22I	ATGCAT	1 cut(s)	1270
EcoT38I	GRGCYC	2 cut(s)	497, 579
ErhI	CCWWGG	3 cut(s)	579, 1058, 1444
FaeI	CATG	7 cut(s)	626, 1133, 1259, 1661, 1790, 1988, 2050
FalI	AAGNNNNNCTT	4 cut(s)	563, 595, 594, 626
FaqI	GGGAC	2 cut(s)	346, 2181
FatI	CATG	7 cut(s)	622, 1129, 1255, 1657, 1786, 1984, 2046
FauI	CCCGC	1 cut(s)	21
FbaI	TGATCA	3 cut(s)	1398, 2008, 2131
FblI	GTMKAC	2 cut(s)	382, 896
FokI	GGATG	4 cut(s)	738, 761, 1277, 1427
FriOI	GRGCYC	2 cut(s)	497, 579
FspBI	CTAG	3 cut(s)	734, 1407, 1731
FspI	TGCGCA	2 cut(s)	1677, 2214
GlaI	GCGC	2 cut(s)	1677, 2214
GsaI	CCCAGC	2 cut(s)	118, 1182
GsuI	CTGGAG	1 cut(s)	1668
HaeIII	GGCC	8 cut(s)	6, 169, 271, 987, 1021, 1525, 2042, 2304
HapII	CCGG	4 cut(s)	166, 460, 863, 1820
HhaI	GCGC	2 cut(s)	1678, 2215
Hin1II	CATG	7 cut(s)	626, 1133, 1259, 1661, 1790, 1988, 2050
Hin6I	GCGC	2 cut(s)	1676, 2213
HinP1I	GCGC	2 cut(s)	1676, 2213
HincII	GTYRAC	1 cut(s)	1846
HindII	GTYRAC	1 cut(s)	1846
HindIII	AAGCTT	1 cut(s)	1140
HpaII	CCGG	4 cut(s)	166, 460, 863, 1820
HphI	GGTGA	3 cut(s)	1127, 1967, 2126
Hpy166II	GTNNAC	5 cut(s)	383, 897, 1507, 1784, 1846
Hpy188I	TCNGA	8 cut(s)	36, 148, 499, 912, 1282, 1329, 1387, 2131
Hpy8I	GTNNAC	5 cut(s)	383, 897, 1507, 1784, 1846
HpyAV	CCTTC	2 cut(s)	1044, 2045
HpyCH4III	ACNGT	9 cut(s)	277, 342, 373, 475, 593, 1043, 1227, 1850, 2396
HpyCH4IV	ACGT	5 cut(s)	778, 867, 919, 1288, 2420
HpySE526I	ACGT	5 cut(s)	778, 867, 919, 1288, 2420
Hsp92II	CATG	7 cut(s)	626, 1133, 1259, 1661, 1790, 1988, 2050
HspAI	GCGC	2 cut(s)	1676, 2213
KroI	GCCGGC	1 cut(s)	1819
KroNI	GCCGGC	1 cut(s)	1821
Ksp22I	TGATCA	3 cut(s)	1398, 2008, 2131
LguI	GCTCTTC	1 cut(s)	1542
LweI	GCATC	6 cut(s)	595, 916, 1255, 1277, 1449, 1579
MaeI	CTAG	3 cut(s)	734, 1407, 1731
MaeII	ACGT	5 cut(s)	778, 867, 919, 1288, 2420
MaeIII	GTNAC	6 cut(s)	28, 658, 691, 1227, 1973, 2396
MbiI	CCGCTC	1 cut(s)	16
MfeI	CAATTG	2 cut(s)	50, 1341
MflI	RGATCY	2 cut(s)	643, 1995
MhlI	GDGCHC	7 cut(s)	105, 180, 497, 579, 883, 2077, 2350
MlyI	GAGTC	6 cut(s)	143, 146, 197, 1271, 1851, 1955
MmeI	TCCRAC	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	1270
MroNI	GCCGGC	1 cut(s)	1819
MroXI	GAANNNNTTC	1 cut(s)	1081
MseI	TTAA	8 cut(s)	285, 1110, 1215, 1467, 2235, 2403, 2433, 2463
MslI	CAYNNNNRTG	3 cut(s)	1791, 2154, 2289
MspA1I	CMGCKG	4 cut(s)	206, 1148, 1178, 1538
MspI	CCGG	4 cut(s)	166, 460, 863, 1820
MspR9I	CCNGG	5 cut(s)	460, 981, 1005, 1490, 1695
MunI	CAATTG	2 cut(s)	50, 1341
Mva1269I	GAATGC	3 cut(s)	1722, 2023, 2188
MvaI	CCWGG	4 cut(s)	981, 1005, 1490, 1695
NaeI	GCCGGC	1 cut(s)	1821
NciI	CCSGG	1 cut(s)	460
NgoMIV	GCCGGC	1 cut(s)	1819
NlaIII	CATG	7 cut(s)	626, 1133, 1259, 1661, 1790, 1988, 2050
NlaIV	GGNNCC	6 cut(s)	576, 585, 1032, 1246, 2113, 2479
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	691, 1973
NsbI	TGCGCA	2 cut(s)	1677, 2214
NsiI	ATGCAT	1 cut(s)	1270
NspI	RCATGY	2 cut(s)	1661, 1988
PaeR7I	CTCGAG	1 cut(s)	1098
PagI	TCATGA	1 cut(s)	622
PceI	AGGCCT	1 cut(s)	1525
PciI	ACATGT	1 cut(s)	1984
PciSI	GCTCTTC	1 cut(s)	1542
PcsI	WCGNNNNNNNCGW	1 cut(s)	1294
PctI	GAATGC	3 cut(s)	1722, 2023, 2188
PdiI	GCCGGC	1 cut(s)	1821
PdmI	GAANNNNTTC	1 cut(s)	1081
PfeI	GAWTC	8 cut(s)	482, 566, 913, 941, 1294, 1324, 1867, 1886
PflFI	GACNNNGTC	1 cut(s)	460
PleI	GAGTC	6 cut(s)	143, 145, 196, 1271, 1850, 1955
PmaCI	CACGTG	1 cut(s)	779
PmlI	CACGTG	1 cut(s)	779
PpsI	GAGTC	6 cut(s)	143, 145, 196, 1271, 1850, 1955
Ppu21I	YACGTR	3 cut(s)	779, 920, 2421
PscI	ACATGT	1 cut(s)	1984
PshBI	ATTAAT	1 cut(s)	1467
PsiI	TTATAA	1 cut(s)	651
Psp6I	CCWGG	4 cut(s)	979, 1003, 1488, 1693
PspCI	CACGTG	1 cut(s)	779
PspFI	CCCAGC	2 cut(s)	114, 1178
PspGI	CCWGG	4 cut(s)	979, 1003, 1488, 1693
PspN4I	GGNNCC	6 cut(s)	576, 585, 1032, 1246, 2113, 2479
PspPI	GGNCC	8 cut(s)	4, 462, 986, 1688, 1940, 2003, 2041, 2303
PspXI	VCTCGAGB	1 cut(s)	1098
PstI	CTGCAG	2 cut(s)	805, 1126
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	2 cut(s)	643, 1995
PsyI	GACNNNGTC	1 cut(s)	460
PvuII	CAGCTG	4 cut(s)	206, 1148, 1178, 1538
RsaI	GTAC	4 cut(s)	1508, 1783, 2423, 2489
RsaNI	GTAC	4 cut(s)	1507, 1782, 2422, 2488
RseI	CAYNNNNRTG	3 cut(s)	1791, 2154, 2289
SapI	GCTCTTC	1 cut(s)	1542
SaqAI	TTAA	8 cut(s)	285, 1110, 1215, 1467, 2235, 2403, 2433, 2463
Sau96I	GGNCC	8 cut(s)	4, 462, 986, 1688, 1940, 2003, 2041, 2303
SbfI	CCTGCAGG	1 cut(s)	1126
SchI	GAGTC	6 cut(s)	143, 146, 197, 1271, 1851, 1955
ScrFI	CCNGG	5 cut(s)	460, 981, 1005, 1490, 1695
SdaI	CCTGCAGG	1 cut(s)	1126
SduI	GDGCHC	7 cut(s)	105, 180, 497, 579, 883, 2077, 2350
SfaNI	GCATC	6 cut(s)	595, 916, 1255, 1277, 1449, 1579
SfcI	CTRYAG	2 cut(s)	801, 1122
Sfr274I	CTCGAG	1 cut(s)	1098
SinI	GGWCC	4 cut(s)	462, 1688, 1940, 2003
SlaI	CTCGAG	1 cut(s)	1098
SmiMI	CAYNNNNRTG	3 cut(s)	1791, 2154, 2289
SmlI	CTYRAG	2 cut(s)	171, 1098
SmoI	CTYRAG	2 cut(s)	171, 1098
SnaBI	TACGTA	1 cut(s)	2421
Sse8387I	CCTGCAGG	1 cut(s)	1126
SseBI	AGGCCT	1 cut(s)	1525
SsiI	CCGC	5 cut(s)	14, 185, 250, 1321, 2351
SspI	AATATT	3 cut(s)	685, 1252, 2101
SspMI	CTAG	3 cut(s)	734, 1407, 1731
StuI	AGGCCT	1 cut(s)	1525
StyD4I	CCNGG	5 cut(s)	458, 979, 1003, 1488, 1693
StyI	CCWWGG	3 cut(s)	579, 1058, 1444
TaaI	ACNGT	9 cut(s)	277, 342, 373, 475, 593, 1043, 1227, 1850, 2396
TaiI	ACGT	5 cut(s)	781, 870, 922, 1291, 2423
TatI	WGTACW	1 cut(s)	1506
TfiI	GAWTC	8 cut(s)	482, 566, 913, 941, 1294, 1324, 1867, 1886
Tru1I	TTAA	8 cut(s)	285, 1110, 1215, 1467, 2235, 2403, 2433, 2463
Tru9I	TTAA	8 cut(s)	285, 1110, 1215, 1467, 2235, 2403, 2433, 2463
TscAI	CASTG	4 cut(s)	139, 596, 1855, 1887
TseFI	GTSAC	2 cut(s)	691, 1973
Tsp45I	GTSAC	2 cut(s)	691, 1973
TspGWI	ACGGA	1 cut(s)	1988
TspRI	CASTG	4 cut(s)	139, 596, 1855, 1887
Tth111I	GACNNNGTC	1 cut(s)	460
VpaK11BI	GGWCC	4 cut(s)	462, 1688, 1940, 2003
VspI	ATTAAT	1 cut(s)	1467
XagI	CCTNNNNNAGG	2 cut(s)	1062, 1710
XapI	RAATTY	4 cut(s)	352, 537, 1642, 1952
XceI	RCATGY	2 cut(s)	1661, 1988
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1056
XhoI	CTCGAG	1 cut(s)	1098
XmiI	GTMKAC	2 cut(s)	382, 896
XmnI	GAANNNNTTC	1 cut(s)	1081
XspI	CTAG	3 cut(s)	734, 1407, 1731
Zsp2I	ATGCAT	1 cut(s)	1270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.