pycom17g07720

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0003954
Physical Location & Seq
Reverse (-)
5626526 .. 5627132
607 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g07720.1

Sequence Viewer

Length: 567 bp
ATGATGCATGGGAACAATCGAAACTTTTTCAAGAAACGCCCTAATATCCAGTTTAAAAGAAGAGGGGGTAACAACAACTACAAGAAAGGAAAGTGGAATGATTCAAGCAGTAAGCAACCTTCAGAGGATTATCAATTGCTCAACACTGTGTATCGTATTCTCTGCCCTTCTAAAAAGATCGGTGGTGTTATTGGGAAGGGTAGCAACATAGTCAAAGCCCTTAAGAGGAGACCCCTGGCAAAGATTAAGGTTTCTGATTCTCTTCTTGGCTCAGATGAGAGAGTAATTATTATCTATATCTCTCCAACAAAAATTTCAAGCAAACAAAATAACCATGAAAATTTAGCTGAGGGAAATGAAATGGAGCCGCATTGTGCTGCCCAGGATGCTCTTTTGAAAGTTCATGACAGGATTGTAGAGGACGATCGTTTTGGTGGAGTTACATTTGATGATGACAACGAGAACAGTGTTGTCCTTCCTACCGATCAGCTTCCAACTTGTGGTATGGAAACTGATGAATTGGTGCTGGTACTCTTTCAATTTTTGTGCTCCTTGCATGTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

189

Amino Acids

21.21

Weight (kDa)

8.84

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 51 - 98 2.6e-07 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 500
AciI CCGC 1 cut(s) 368
AcsI RAATTY 2 cut(s) 312, 340
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 1 cut(s) 531
AfiI CCNNNNNNNGG 2 cut(s) 225, 500
AflII CTTAAG 1 cut(s) 221
AgsI TTSAA 5 cut(s) 31, 105, 318, 397, 539
AjnI CCWGG 2 cut(s) 234, 381
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AluBI AGCT 2 cut(s) 347, 490
AluI AGCT 2 cut(s) 347, 490
Alw21I GWGCWC 1 cut(s) 551
Alw26I GTCTC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 2 cut(s) 312, 340
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
BarI GAAGNNNNNNTAC 2 cut(s) 103, 135
Bbv12I GWGCWC 1 cut(s) 551
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 364
BciT130I CCWGG 2 cut(s) 236, 383
BcoDI GTCTC 1 cut(s) 223
BfrI CTTAAG 1 cut(s) 221
BisI GCNGC 2 cut(s) 368, 378
BlsI GCNGC 2 cut(s) 369, 379
Bme1390I CCNGG 2 cut(s) 236, 383
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 2 cut(s) 236, 383
BmsI GCATC 1 cut(s) 376
Bpu10I CCTNAGC 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 234, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 500
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 2 cut(s) 236, 383
BseDI CCNNGG 2 cut(s) 234, 381
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 2 cut(s) 225, 500
BseMII CTCAG 2 cut(s) 285, 339
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 241
BseXI GCAGC 1 cut(s) 364
Bsh1285I CGRYCG 1 cut(s) 427
BsiEI CGRYCG 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 225, 500
BsmAI GTCTC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 551
Bsp143I GATC 3 cut(s) 177, 424, 484
BspACI CCGC 1 cut(s) 368
BspCNI CTCAG 2 cut(s) 284, 340
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 366
BspTI CTTAAG 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 234, 381
BssMI GATC 3 cut(s) 177, 424, 484
Bst2UI CCWGG 2 cut(s) 236, 383
Bst4CI ACNGT 2 cut(s) 148, 467
Bst6I CTCTTC 2 cut(s) 55, 267
BstAFI CTTAAG 1 cut(s) 221
BstDEI CTNAG 2 cut(s) 271, 348
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 3 cut(s) 180, 427, 487
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 3 cut(s) 177, 424, 484
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 2 cut(s) 236, 383
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 2 cut(s) 234, 381
BstV1I GCAGC 1 cut(s) 364
BtsCI GGATG 1 cut(s) 391
BtsIMutI CAGTG 2 cut(s) 144, 472
CciI TCATGA 1 cut(s) 403
Csp6I GTAC 1 cut(s) 530
CviAII CATG 4 cut(s) 8, 335, 404, 557
CviJI RGCY 5 cut(s) 218, 270, 347, 367, 490
CviKI_1 RGCY 5 cut(s) 218, 270, 347, 367, 490
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 2 cut(s) 271, 348
DpnI GATC 3 cut(s) 179, 426, 486
DpnII GATC 3 cut(s) 177, 424, 484
DraI TTTAAA 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 55, 267
EarI CTCTTC 2 cut(s) 55, 267
Eco31I GGTCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 105
EcoRII CCWGG 2 cut(s) 234, 381
EcoT22I ATGCAT 1 cut(s) 9
FaeI CATG 4 cut(s) 11, 338, 407, 560
FaiI YATR 7 cut(s) 9, 209, 297, 336, 405, 506, 558
FatI CATG 4 cut(s) 7, 334, 403, 556
Fnu4HI GCNGC 2 cut(s) 368, 378
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 2 cut(s) 368, 378
GluI GCNGC 2 cut(s) 368, 378
Hin1II CATG 4 cut(s) 11, 338, 407, 560
HinfI GANTC 2 cut(s) 101, 257
Hpy188I TCNGA 3 cut(s) 124, 256, 274
Hpy188III TCNNGA 2 cut(s) 31, 404
HpyAV CCTTC 4 cut(s) 129, 177, 190, 485
HpyCH4III ACNGT 2 cut(s) 148, 467
HpyCH4V TGCA 2 cut(s) 7, 556
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpyF3I CTNAG 2 cut(s) 271, 348
Hsp92II CATG 4 cut(s) 11, 338, 407, 560
Kzo9I GATC 3 cut(s) 177, 424, 484
LmnI GCTCC 2 cut(s) 364, 554
LpnPI CCDG 7 cut(s) 62, 221, 248, 368, 394, 395, 512
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 1 cut(s) 376
MaeIII GTNAC 2 cut(s) 68, 439
MalI GATC 3 cut(s) 179, 426, 486
MboI GATC 3 cut(s) 177, 424, 484
MboII GAAGA 2 cut(s) 72, 254
MfeI CAATTG 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 551
MluCI AATT 6 cut(s) 134, 285, 312, 340, 518, 539
MmeI TCCRAC 2 cut(s) 329, 518
MnlI CCTC 5 cut(s) 56, 118, 219, 343, 412
Mph1103I ATGCAT 1 cut(s) 9
MseI TTAA 3 cut(s) 54, 222, 246
MspCI CTTAAG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 236, 383
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 2 cut(s) 236, 383
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 3 cut(s) 177, 424, 484
NlaIII CATG 4 cut(s) 11, 338, 407, 560
NlaIV GGNNCC 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 9
NspI RCATGY 1 cut(s) 560
PagI TCATGA 1 cut(s) 403
PfeI GAWTC 2 cut(s) 101, 257
PflMI CCANNNNNTGG 1 cut(s) 500
PkrI GCNGC 2 cut(s) 369, 379
Ple19I CGATCG 1 cut(s) 427
Psp6I CCWGG 2 cut(s) 234, 381
PspGI CCWGG 2 cut(s) 234, 381
PspN4I GGNNCC 1 cut(s) 366
PvuI CGATCG 1 cut(s) 427
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
SaqAI TTAA 3 cut(s) 54, 222, 246
SatI GCNGC 2 cut(s) 368, 378
Sau3AI GATC 3 cut(s) 177, 424, 484
ScrFI CCNGG 2 cut(s) 236, 383
SduI GDGCHC 1 cut(s) 551
SetI ASST 4 cut(s) 121, 252, 349, 492
SfaNI GCATC 1 cut(s) 376
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 6 cut(s) 134, 285, 312, 340, 518, 539
SsiI CCGC 1 cut(s) 368
StyD4I CCNGG 2 cut(s) 234, 381
TaaI ACNGT 2 cut(s) 148, 467
TaqI TCGA 1 cut(s) 19
TasI AATT 6 cut(s) 134, 285, 312, 340, 518, 539
TauI GCSGC 1 cut(s) 370
TfiI GAWTC 2 cut(s) 101, 257
Tru1I TTAA 3 cut(s) 54, 222, 246
Tru9I TTAA 3 cut(s) 54, 222, 246
TscAI CASTG 2 cut(s) 151, 472
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 4 cut(s) 351, 372, 392, 531
TspRI CASTG 2 cut(s) 151, 472
Van91I CCANNNNNTGG 1 cut(s) 500
Vha464I CTTAAG 1 cut(s) 221
XapI RAATTY 2 cut(s) 312, 340
XceI RCATGY 1 cut(s) 560
Zsp2I ATGCAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.