Rorug02G0499000

K homology RNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
63159933 .. 63164087
4155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0499000.1

Sequence Viewer

Length: 1785 bp
ATGAGATCTCAATTTCATCTTTGGGCCAATCCACTAATCCAGCATGAAGTCCAGAACCTGCAAGCCCATACACAGTGGTTTCCTAAACCGGCCACACGATGTCGTATTACTTCCCCGTCGGTAAAGATCATTAGCGGTGAGGCGCGGTTCATTAGAGATAGCAACAGAAGCGTCGGAGACGATGGAAGAAAGCCTCTGCAAATTTCCATAACCACCGCCTCAACCTCTTCCACTCAGCCGACGACGACGACGACGACGAAGAAAATGAGCCCTAATTCAAATAGAGAAGCAATGTTAGATGAAGAAGACTCCATGGAATTAGATAGCTTAGTGGTAGAGAAATGCCTTAGGTGTAGCGGCGATTGTGCTAGTGGAAAATTGCTAGTTTGTAGTGTGATTGGGTGCCCGATTTCTGTTCACGAGGAGTGTATGTGTTGTAAGCCTGAAATTGATGAGAAGGGAAGGTTCTACTGCCCTTACTGTGCTTACAAGAGAGCGTTGGTGCGGGAAGAGAAGCTGAGGAGGAAGGCAATGCAAGCTAAGGAGATTCTGTCCATGTTTATCGATAGCGGTAGGGTTAATTTTGCGGTGAATGATGGAGAGGGGAGTAGTGGCAATGGTGGAGGTGAAGGCACATCAGCAGGCATTGGGGCGGTTCGGGATGAGGTGACAGTAGGCAGAGGGATGGATGGTGGCGAAACTGAGGATCGGTCTTTGGAAGTAGAAGAAAATGGACACGGGGAAATGGATGAGGATGTGAGTAAGGGAAATTCGGACCAACAATGTGTGTCGGAGAGGCGTGAGTTTGATAAGAGAAATGAAGATGATGCAGTTGATGGAATTGACCGAGGAGATGGGGATAGTATAAGGGGGAATGAGGAGAATGAAGGCAAAAGTCCGGGAGAAGAACTGATGCGACCAGAGGCAATGGAGGTGCCTGCAGATGACACTGTTGTGCCTGAATCTGGTGATTTCCAGAGTGGTTCTCCTCTATTGCGTAAGAGGCGTTATAAACAAAGAGCTCAAAAGATAGTGCAGCTTCCGTATGCCGTTCCAGTAAGGATAGTGCCTTCTCCATCAACAAAATCATCTTCTTGCCAAACTGATGCTGTAGAGGAGGATGCCGAGAAGCAAAGTGAGAAAGACGCTACCTCCTATTCCTCTGAGTCTAGAAAAGTTTCAGAATCAGACCAAAATGTGGAAGGTACTATCTCCTCCAAGTCAAGAGACATTCCAGAGTCAAACCCAAATCAGAAAGCTACTACCTCCTCCAAGTCCAGAAAAAGTCCAGAGTCGAACCAAAATGAGAAAGTTACTACATCCTGCTTTGAGTCAAGAAAAGTTCCAGAATCAAACCAAAATGAGAAAGCTACCACCTCCTTGTCCTCTGAGTCAAGAGAAATTCCAGAGCCAAACCAAAATGAGAAAGCTACTACCGCCTTCTCCAAGTCAAGAAAAGATCCAGACTCGAACCAAAATGAGAAAACTACTACCTCCTCCACTGAACCGATAAAAGTTCTGGAATCTGGAAGTGAAGAATTGTTATTTCATAATGCCAAGCGGAGGAAAATTAAGTGGACAGCTGAAGAGTTGAAAATGCTAAAGGATGGAGTACGACTATTTTCAGCCCAAGTAAACAAAAATCTTCCCTGGAGGAAAATTTTGGAACTTGGTAAGGCTGTTTTCCACGAGACTCGGACTCCAGATAATCTCAAGGATAAATGGAAGCTCCTAAGCAGAGAAGCAGCTAAAAAAAACAAACTTGATCACTTGGACTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

594

Amino Acids

65.99

Weight (kDa)

5.72

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1011
Acc36I ACCTGC 1 cut(s) 66
AccB1I GGYRCC 2 cut(s) 402, 934
AccB7I CCANNNNNTGG 1 cut(s) 1198
AccII CGCG 1 cut(s) 145
AclWI GGATC 2 cut(s) 714, 1454
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 4 cut(s) 201, 769, 1401, 1659
AcuI CTGAAG 1 cut(s) 1605
AfaI GTAC 2 cut(s) 1207, 1614
AfiI CCNNNNNNNGG 3 cut(s) 965, 1198, 1563
AgsI TTSAA 2 cut(s) 279, 1594
AjnI CCWGG 1 cut(s) 1649
AleI CACNNNNGTG 1 cut(s) 953
Alw21I GWGCWC 1 cut(s) 1024
Alw26I GTCTC 3 cut(s) 171, 1221, 1685
AlwI GGATC 2 cut(s) 714, 1454
AlwNI CAGNNNCTG 1 cut(s) 58
AoxI GGCC 2 cut(s) 24, 90
ApeKI GCWGC 2 cut(s) 1036, 1745
ApoI RAATTY 4 cut(s) 201, 769, 1401, 1659
Asp700I GAANNNNTTC 1 cut(s) 1177
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 24, 775
AsuC2I CCSGG 1 cut(s) 900
AsuHPI GGTGA 5 cut(s) 149, 601, 638, 679, 980
AvaII GGWCC 1 cut(s) 775
AxyI CCTNAGG 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 407
BanI GGYRCC 2 cut(s) 402, 934
BanII GRGCYC 2 cut(s) 272, 1024
BauI CACGAG 2 cut(s) 419, 1688
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 1024
BbvCI CCTCAGC 1 cut(s) 518
BbvI GCAGC 2 cut(s) 1048, 1757
BccI CCATC 8 cut(s) 176, 590, 679, 683, 830, 848, 1084, 1601
BceAI ACGGC 1 cut(s) 1034
BciT130I CCWGG 1 cut(s) 1651
BclI TGATCA 1 cut(s) 1765
BcnI CCSGG 1 cut(s) 900
BcoDI GTCTC 3 cut(s) 171, 1221, 1685
BfaI CTAG 3 cut(s) 369, 383, 1170
BfmI CTRYAG 2 cut(s) 939, 1110
BfuAI ACCTGC 1 cut(s) 66
BglII AGATCT 1 cut(s) 5
BisI GCNGC 3 cut(s) 358, 1037, 1746
BlsI GCNGC 3 cut(s) 359, 1038, 1747
Bme1390I CCNGG 2 cut(s) 900, 1651
Bme18I GGWCC 1 cut(s) 775
BmgT120I GGNCC 2 cut(s) 24, 775
BmiI GGNNCC 2 cut(s) 404, 936
BmrFI CCNGG 2 cut(s) 900, 1651
BmsI GCATC 4 cut(s) 817, 903, 1096, 1111
BpiI GAAGAC 1 cut(s) 312
BplI GAGNNNNNCTC 2 cut(s) 970, 1002
BpmI CTGGAG 2 cut(s) 1672, 1686
Bpu10I CCTNAGC 3 cut(s) 518, 540, 1733
BpuEI CTTGAG 1 cut(s) 1697
BpuMI CCSGG 1 cut(s) 900
Bsa29I ATCGAT 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 312, 847, 1649
BsaXI ACNNNNNCTCC 9 cut(s) 416, 446, 536, 566, 1136, 1166, 1684, 1714, 1760
Bsc4I CCNNNNNNNGG 3 cut(s) 965, 1198, 1563
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 1055
Bse21I CCTNAGG 1 cut(s) 347
Bse3DI GCAATG 4 cut(s) 297, 537, 622, 933
BseBI CCWGG 1 cut(s) 1651
BseCI ATCGAT 1 cut(s) 564
BseDI CCNNGG 3 cut(s) 312, 847, 1649
BseGI GGATG 8 cut(s) 667, 690, 694, 754, 760, 1126, 1319, 1612
BseLI CCNNNNNNNGG 3 cut(s) 965, 1198, 1563
BseMI GCAATG 4 cut(s) 297, 537, 622, 933
BseMII CTCAG 5 cut(s) 248, 509, 693, 1155, 1380
BseNI ACTGG 1 cut(s) 1055
BseRI GAGGAG 9 cut(s) 437, 535, 864, 893, 978, 1130, 1204, 1258, 1486
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 2 cut(s) 1048, 1757
BsgI GTGCAG 1 cut(s) 1055
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 2 cut(s) 26, 92
BshNI GGYRCC 2 cut(s) 402, 934
BshVI ATCGAT 1 cut(s) 564
BsiHKAI GWGCWC 1 cut(s) 1024
BsiSI CCGG 2 cut(s) 89, 899
BslI CCNNNNNNNGG 3 cut(s) 965, 1198, 1563
BsmAI GTCTC 3 cut(s) 171, 1221, 1685
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 2 cut(s) 26, 92
Bsp1286I GDGCHC 3 cut(s) 272, 407, 1024
Bsp143I GATC 5 cut(s) 5, 126, 706, 1459, 1765
Bsp19I CCATGG 1 cut(s) 312
BspANI GGCC 2 cut(s) 26, 92
BspCNI CTCAG 5 cut(s) 247, 510, 694, 1156, 1381
BspDI ATCGAT 1 cut(s) 564
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 404, 936
BspMAI CTGCAG 1 cut(s) 943
BspMI ACCTGC 1 cut(s) 66
BspPI GGATC 2 cut(s) 714, 1454
BspT107I GGYRCC 2 cut(s) 402, 934
BsrDI GCAATG 4 cut(s) 297, 537, 622, 933
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 1055
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 3 cut(s) 312, 847, 1649
BssMI GATC 5 cut(s) 5, 126, 706, 1459, 1765
BssSI CACGAG 2 cut(s) 419, 1688
BssT1I CCWWGG 1 cut(s) 312
Bst2BI CACGAG 2 cut(s) 419, 1688
Bst2UI CCWGG 1 cut(s) 1651
Bst4CI ACNGT 4 cut(s) 75, 482, 673, 952
Bst6I CTCTTC 3 cut(s) 232, 504, 1581
BstC8I GCNNGC 4 cut(s) 63, 537, 643, 939
BstDEI CTNAG 9 cut(s) 234, 328, 347, 518, 540, 702, 1164, 1389, 1733
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 8 cut(s) 667, 690, 694, 754, 760, 1126, 1319, 1612
BstFNI CGCG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 5 cut(s) 8, 129, 709, 1462, 1768
BstMAI GTCTC 3 cut(s) 171, 1221, 1685
BstMBI GATC 5 cut(s) 5, 126, 706, 1459, 1765
BstMWI GCNNNNNNNGC 4 cut(s) 168, 536, 1003, 1436
BstNI CCWGG 1 cut(s) 1651
BstSCI CCNGG 2 cut(s) 898, 1649
BstSFI CTRYAG 2 cut(s) 939, 1110
BstSLI GKGCMC 1 cut(s) 407
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 1048, 1757
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 2 cut(s) 5, 1459
BstYI RGATCY 2 cut(s) 5, 1459
Bsu15I ATCGAT 1 cut(s) 564
Bsu36I CCTNAGG 1 cut(s) 347
BsuRI GGCC 2 cut(s) 26, 92
BsuTUI ATCGAT 1 cut(s) 564
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 8 cut(s) 667, 690, 694, 754, 760, 1126, 1319, 1612
BtsIMutI CAGTG 3 cut(s) 80, 948, 1500
BveI ACCTGC 1 cut(s) 66
Cac8I GCNNGC 4 cut(s) 63, 537, 643, 939
CaiI CAGNNNCTG 1 cut(s) 58
CfoI GCGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 24, 775
ClaI ATCGAT 1 cut(s) 564
CseI GACGC 2 cut(s) 160, 1154
Csp6I GTAC 2 cut(s) 1206, 1613
CviAII CATG 3 cut(s) 44, 313, 556
CviQI GTAC 2 cut(s) 1206, 1613
DdeI CTNAG 9 cut(s) 234, 328, 347, 518, 540, 702, 1164, 1389, 1733
DpnI GATC 5 cut(s) 7, 128, 708, 1461, 1767
DpnII GATC 5 cut(s) 5, 126, 706, 1459, 1765
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 3 cut(s) 232, 504, 1581
EarI CTCTTC 3 cut(s) 232, 504, 1581
Ecl136II GAGCTC 1 cut(s) 1022
Eco130I CCWWGG 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 272, 1024
Eco47I GGWCC 1 cut(s) 775
Eco53kI GAGCTC 1 cut(s) 1022
Eco57I CTGAAG 1 cut(s) 1605
Eco81I CCTNAGG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 1022
EcoRII CCWGG 1 cut(s) 1649
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 2 cut(s) 272, 1024
ErhI CCWWGG 1 cut(s) 312
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 3 cut(s) 47, 316, 559
FatI CATG 3 cut(s) 43, 312, 555
FauI CCCGC 1 cut(s) 498
FbaI TGATCA 1 cut(s) 1765
Fnu4HI GCNGC 3 cut(s) 358, 1037, 1746
FokI GGATG 8 cut(s) 674, 697, 701, 761, 767, 1133, 1306, 1619
FriOI GRGCYC 2 cut(s) 272, 1024
Fsp4HI GCNGC 3 cut(s) 358, 1037, 1746
FspBI CTAG 3 cut(s) 369, 383, 1170
GlaI GCGC 1 cut(s) 144
GluI GCNGC 3 cut(s) 358, 1037, 1746
GsuI CTGGAG 2 cut(s) 1672, 1686
HaeIII GGCC 2 cut(s) 26, 92
HapII CCGG 2 cut(s) 89, 899
HgaI GACGC 2 cut(s) 160, 1154
HhaI GCGC 1 cut(s) 145
Hin1II CATG 3 cut(s) 47, 316, 559
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HpaII CCGG 2 cut(s) 89, 899
HphI GGTGA 5 cut(s) 149, 601, 638, 679, 980
Hpy166II GTNNAC 3 cut(s) 418, 1578, 1636
Hpy188I TCNGA 9 cut(s) 176, 775, 793, 1165, 1183, 1189, 1254, 1390, 1698
Hpy8I GTNNAC 3 cut(s) 418, 1578, 1636
Hpy99I CGWCG 8 cut(s) 121, 176, 244, 247, 250, 253, 256, 259
HpyAV CCTTC 8 cut(s) 451, 456, 520, 623, 881, 1080, 1196, 1450
HpyCH4III ACNGT 4 cut(s) 75, 482, 673, 952
HpyCH4V TGCA 6 cut(s) 61, 199, 535, 830, 941, 1036
HpyF10VI GCNNNNNNNGC 4 cut(s) 168, 536, 1003, 1436
HpyF3I CTNAG 9 cut(s) 234, 328, 347, 518, 540, 702, 1164, 1389, 1733
Hsp92II CATG 3 cut(s) 47, 316, 559
HspAI GCGC 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 1765
Kzo9I GATC 5 cut(s) 5, 126, 706, 1459, 1765
LmnI GCTCC 1 cut(s) 1734
Lsp1109I GCAGC 2 cut(s) 1048, 1757
LweI GCATC 4 cut(s) 817, 903, 1096, 1111
MaeI CTAG 3 cut(s) 369, 383, 1170
MaeIII GTNAC 2 cut(s) 667, 1312
MalI GATC 5 cut(s) 7, 128, 708, 1461, 1767
MboI GATC 5 cut(s) 5, 126, 706, 1459, 1765
MflI RGATCY 2 cut(s) 5, 1459
MhlI GDGCHC 3 cut(s) 272, 407, 1024
MmeI TCCRAC 2 cut(s) 154, 771
MroXI GAANNNNTTC 1 cut(s) 1177
MseI TTAA 2 cut(s) 579, 1572
MslI CAYNNNNRTG 1 cut(s) 953
MspA1I CMGCKG 1 cut(s) 1583
MspI CCGG 2 cut(s) 89, 899
MspR9I CCNGG 2 cut(s) 900, 1651
MvaI CCWGG 1 cut(s) 1651
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 4 cut(s) 168, 536, 1003, 1436
NciI CCSGG 1 cut(s) 900
NcoI CCATGG 1 cut(s) 312
NdeII GATC 5 cut(s) 5, 126, 706, 1459, 1765
NlaIII CATG 3 cut(s) 47, 316, 559
NlaIV GGNNCC 2 cut(s) 404, 936
NmeAIII GCCGAG 1 cut(s) 1150
NmuCI GTSAC 1 cut(s) 667
OliI CACNNNNGTG 1 cut(s) 953
PcsI WCGNNNNNNNCGW 3 cut(s) 248, 251, 254
PdmI GAANNNNTTC 1 cut(s) 1177
PfeI GAWTC 5 cut(s) 547, 962, 1184, 1349, 1523
PflMI CCANNNNNTGG 1 cut(s) 1198
PfoI TCCNGGA 1 cut(s) 898
PkrI GCNGC 3 cut(s) 359, 1038, 1747
PsiI TTATAA 1 cut(s) 1011
Psp124BI GAGCTC 1 cut(s) 1024
Psp6I CCWGG 1 cut(s) 1649
PspGI CCWGG 1 cut(s) 1649
PspN4I GGNNCC 2 cut(s) 404, 936
PspPI GGNCC 2 cut(s) 24, 775
PstI CTGCAG 1 cut(s) 943
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 2 cut(s) 5, 1459
PvuII CAGCTG 1 cut(s) 1583
RsaI GTAC 2 cut(s) 1207, 1614
RsaNI GTAC 2 cut(s) 1206, 1613
RseI CAYNNNNRTG 1 cut(s) 953
SacI GAGCTC 1 cut(s) 1024
SaqAI TTAA 2 cut(s) 579, 1572
SatI GCNGC 3 cut(s) 358, 1037, 1746
Sau3AI GATC 5 cut(s) 5, 126, 706, 1459, 1765
Sau96I GGNCC 2 cut(s) 24, 775
ScrFI CCNGG 2 cut(s) 900, 1651
SduI GDGCHC 3 cut(s) 272, 407, 1024
SfaNI GCATC 4 cut(s) 817, 903, 1096, 1111
SfcI CTRYAG 2 cut(s) 939, 1110
SinI GGWCC 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 953
SmlI CTYRAG 1 cut(s) 1712
SmoI CTYRAG 1 cut(s) 1712
SspMI CTAG 3 cut(s) 369, 383, 1170
SstI GAGCTC 1 cut(s) 1024
StyD4I CCNGG 2 cut(s) 898, 1649
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 4 cut(s) 75, 482, 673, 952
TaqI TCGA 3 cut(s) 564, 1295, 1469
TaqII GACCGA 2 cut(s) 699, 861
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 5 cut(s) 547, 962, 1184, 1349, 1523
Tru1I TTAA 2 cut(s) 579, 1572
Tru9I TTAA 2 cut(s) 579, 1572
TscAI CASTG 3 cut(s) 80, 955, 1507
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 2 cut(s) 1036, 1745
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 7 cut(s) 5, 60, 139, 315, 834, 900, 1538
TspGWI ACGGA 1 cut(s) 1032
TspRI CASTG 3 cut(s) 80, 955, 1507
Van91I CCANNNNNTGG 1 cut(s) 1198
VpaK11BI GGWCC 1 cut(s) 775
XapI RAATTY 4 cut(s) 201, 769, 1401, 1659
XbaI TCTAGA 1 cut(s) 1169
XmnI GAANNNNTTC 1 cut(s) 1177
XspI CTAG 3 cut(s) 369, 383, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.