Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003954

Physical Location & Seq

Genomic Coordinates Forward (+)

81965378 .. 81971030

Gene Structure 5653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG587500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2277 bp

ATGGATTGGAACAAGCGGAATGTTCTCAGCCAACGGCCTACTGTGCAGTTTAAAAGAAAAGGGAGCGGCAACAAGAAAGGAAACTGGAATAATTCAAACCGCGAACAGTCTTCAGGAAATTCTCAGTCCCTCGATACTGTGTATCGTATACTTTGCCCCTCTAAAAAAATTGGTGGTGTAATTGGAAAAGGTGGTGGCATAATCAAATCCCTGAGAGAAGAGACCCGGTCCAAGATTACAGTTGCTGATTCTGTTCCGGGCTCAGATGAGAGAGTCATTATTATCTTTAGTTCCCCAATCAAAATTTCAAAGAAAAAAAATAGTGATGAAGATTCAAAGGAGCCCTTGGAGCCACACTGTGCTGCCCAAGATGCACTTTTGAAAGTTCATGACAGGATTGTAGAGGAAGATCTTTATAATGGAGTTACATTTGATGATGATAATGAGAATATTGTTGTCACAAGACTTCTAGTTCCAAACAACTTGGTAGGATGTCTTCTAGGAAAGCGTGGGGATGTTATTCAAAGATTGCGAAGTGAGACACGTGCAAACATTCGGGTTCTTCCCGCAGATCAGCTTCCTACTTGTGCTATGGATACTGATGAATTGGTGCAGATATCCGGAAAACCGGACGTGGCAAAAAGAGCACTTTATGAAGTGTCTACTCTATTGCATCAGAATCCACGTAAGGACAAACCTCCTTTGGGATCGGCTATACCTTTTGGGGGTCAGGGGTTTCATCTGCCAGGAGCCCCAAATATGCTGCAACCTGGCAATCCAATGTGGCCTAATAGGGAACCTTCCCACAATATGCCACCAATGCCATGGATAGGAGAATATGGAAATCATTCCTCTGGATATGCTCGAGGAGGGTTTAATGGTGATCCTGCGGGGCATGGGGTTGAAGCTTCAGCTGAGTTTTATGTAAAGATTTTGTGTTCAGCTGGGAAAATTGGTGGGGTTATTGGCAAGGGGGGTTTTAATGTGAAACAGTTACAAGAGGAAACAGGAGCCAATATTCATGTTCAGGATGCATCAACAGACTCAGAAGAACGTGTGATTCGTGTCTCTGCTTTCGAGGCTTTGCGGAATCCAAGGTCGCAAACAATTGAGGCAATTCTTCAGCTTCAAAACAAAGCAAGTGAATTATCTGATAAAGGTATGATCACGACTAGGCTTCTTGTTCCATCGAGTAAAGTTGGCTGCATCCTTGGACAGGGAGGACAAGTTATTAATGAGATGAGAAGGAGAACCCAGGCAGATATTCGTGTGTACTCGAAAGACGATAGGCCTAAATGTGCAGCTGAAGATGAAGAGCTTGTGCAGATATCTGGGAACTTTGTTGTTGCTAAAGATGCTTTGGCTGAGATTACGTCAAGACTGAGAGTAAGAACACTGCGTGATACAAATGCTGGAGAAGAACATGCTCCTATTGGCCCTGCGCACAGATTTGGTCCTCCTGGCAGCTTGCCTGTTAGAGGAATGCCACCACCACCTAGTGCAATTAGAGCTGGCAGCTCTGTTCGATATGATCCTCTAAAGGTTGGTAGACATGAATACGAACCAGAGAGATATCCAGTTCTGCCGGCTGCTTCTGGCTATCAAAGAGTCAACAGTGCTTTGGATGGTAGGATTCCAAATAATGCAGTGGATTCTTTTACTGGAATAGGGGGGAGCAACATTTCCCATATTGGAGAGGTTTCAGGACCGAGAGTGAAATTCCAAGACTCCCAAAGTAGTCGCCCTGAACGTGTTGCTGAGATCCGTGGTCCTGATCAGTTGAATGCAGCACAGAATATCCTTCAGGCCCTCATGGCTTCTATTGGTCAAAATGCAAGTGCTCAGCCAAGTTCCTACCACAACGCAAATACTCGGCAAGGCTCCTACCACAACATCTCTGATCACCAAAGCCCGTATCATGTCAATGCTCCAAGAAGCCCACACCGAATGAATGCTCCACAAAGTCCCTATCGAGTAAATGCGCAGCAAAGTCCATACCAAATCAACCAAATCAAGGCTCAGCAAAGCCCCTACCAAAGCAATACTCATCAAAGCCCCTACCATATCAATGCTCATCAAGGCCCGTACCAAATCAATGCTCAGCAAAGCTCTTATCAGTTGAGTGCTCCACAAGGATCAAACCCCAACATCAATGCTCCACAAGGTGCATACCGTAACCTTAACTCACAGCAAGCTACGTACCATAACCCTAACTCACAGCAAGGTGCATATCATAACCCTAACTCACAGCAAGGTGCCTACCAGTACCGACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

758

Amino Acids

82.91

Weight (kDa)

9.23

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	48 - 104	6.3e-12	KH domain
KH_1	PF00013	154 - 220	1.3e-13	KH domain
KH_1	PF00013	309 - 358	3e-11	KH domain
KH_1	PF00013	390 - 458	2.3e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003954)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170 FvH4_6g45170
malus_domestica	MD09G1087900.v1.1 MD17G1076800.v1.1 MD17G1076900.v1.1 MD17G1077600.v1.1
prunus_persica	Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1 Prupe.3G237700_v2.0.a1
pyrus_communis	pycom09g01340 pycom17g07720
rosa_chinensis	RchiOBHm_Chr2g0162761 RchiOBHm_Chr2g0162821 RchiOBHm_Chr2g0162871
rosa_laevigata	RLG00000021358
rosa_multiflora	Rmu_co8424937.1_g000001 Rmu_sc0006129.1_g000028
rosa_roxburghii	Rroxscaffold_2G00087750
rosa_rugosa	Rorug02G0498900 Rorug02G0498900 Rorug02G0499000
rosa_samantha	Rh2AG564900 Rh2BG577600 Rh2CG547400 Rh2DG587500
rosa_wichuraiana	Rw2G046750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
Acc16I	TGCGCA	2 cut(s)	1443, 1983
AccB1I	GGYRCC	1 cut(s)	2255
AccBSI	CCGCTC	1 cut(s)	66
AccI	GTMKAC	3 cut(s)	148, 662, 1549
AccII	CGCG	1 cut(s)	102
AccIII	TCCGGA	1 cut(s)	620
AciI	CCGC	6 cut(s)	16, 66, 100, 567, 890, 1087
AclWI	GGATC	5 cut(s)	715, 878, 1526, 1756, 2143
AcsI	RAATTY	3 cut(s)	118, 303, 1718
AcuI	CTGAAG	5 cut(s)	96, 894, 1106, 1326, 1787
AcvI	CACGTG	1 cut(s)	545
AdeI	CACNNNGTG	4 cut(s)	359, 1400, 1499, 2165
AfaI	GTAC	4 cut(s)	1274, 2087, 2201, 2267
AfiI	CCNNNNNNNGG	6 cut(s)	704, 725, 830, 1216, 1478, 2014
AflIII	ACRYGT	3 cut(s)	542, 1054, 1750
AgsI	TTSAA	8 cut(s)	96, 309, 336, 382, 524, 905, 1130, 1783
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	4 cut(s)	745, 769, 1254, 1459
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
Alw21I	GWGCWC	3 cut(s)	649, 1843, 2128
Alw26I	GTCTC	3 cut(s)	215, 533, 1072
AlwI	GGATC	5 cut(s)	715, 878, 1526, 1756, 2143
AlwNI	CAGNNNCTG	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	864
Aor13HI	TCCGGA	1 cut(s)	620
AoxI	GGCC	6 cut(s)	35, 785, 1289, 1435, 1806, 2080
ApeKI	GCWGC	9 cut(s)	362, 763, 1203, 1301, 1464, 1515, 1589, 1787, 1984
ApoI	RAATTY	3 cut(s)	118, 303, 1718
AseI	ATTAAT	1 cut(s)	1233
Asp700I	GAANNNNTTC	1 cut(s)	847
AspLEI	GCGC	2 cut(s)	1444, 1984
AspS9I	GGNCC	7 cut(s)	228, 1436, 1454, 1706, 1769, 1807, 2081
AsuC2I	CCSGG	2 cut(s)	226, 258
AsuHPI	GGTGA	2 cut(s)	893, 1895
AvaI	CYCGRG	1 cut(s)	864
AvaII	GGWCC	4 cut(s)	228, 1454, 1706, 1769
BanI	GGYRCC	1 cut(s)	2255
BanII	GRGCYC	3 cut(s)	263, 345, 754
BarI	GAAGNNNNNNTAC	2 cut(s)	480, 512
BbrPI	CACGTG	1 cut(s)	545
BbsI	GAAGAC	2 cut(s)	102, 488
Bbv12I	GWGCWC	3 cut(s)	649, 1843, 2128
BbvI	GCAGC	9 cut(s)	349, 750, 1190, 1313, 1476, 1527, 1576, 1799, 1996
BccI	CCATC	2 cut(s)	1195, 1619
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	4 cut(s)	747, 771, 1256, 1461
BciVI	GTATCC	1 cut(s)	589
BclI	TGATCA	3 cut(s)	1164, 1774, 1900
BcnI	CCSGG	2 cut(s)	226, 258
BcoDI	GTCTC	3 cut(s)	215, 533, 1072
BfaI	CTAG	4 cut(s)	470, 500, 1173, 1497
BfuI	GTATCC	1 cut(s)	589
BglI	GCCNNNNNGGC	1 cut(s)	1814
BglII	AGATCT	1 cut(s)	409
BlpI	GCTNAGC	3 cut(s)	1842, 2019, 2100
Bme1390I	CCNGG	6 cut(s)	226, 258, 747, 771, 1256, 1461
Bme18I	GGWCC	4 cut(s)	228, 1454, 1706, 1769
BmeT110I	CYCGRG	1 cut(s)	864
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	7 cut(s)	228, 1436, 1454, 1706, 1769, 1807, 2081
BmiI	GGNNCC	7 cut(s)	342, 351, 751, 798, 1012, 1882, 2257
BmrFI	CCNGG	6 cut(s)	226, 258, 747, 771, 1256, 1461
BmsI	GCATC	6 cut(s)	361, 682, 1021, 1043, 1215, 1345
BpiI	GAAGAC	2 cut(s)	102, 488
BpmI	CTGGAG	1 cut(s)	1434
Bpu1102I	GCTNAGC	3 cut(s)	1842, 2019, 2100
BpuMI	CCSGG	2 cut(s)	226, 258
BsaAI	YACGTR	3 cut(s)	545, 686, 2199
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	6 cut(s)	345, 824, 1094, 1210, 1254, 1765
BsaWI	WCCGGW	2 cut(s)	620, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	1212, 1242
Bsc4I	CCNNNNNNNGG	6 cut(s)	704, 725, 830, 1216, 1478, 2014
Bse118I	RCCGGY	1 cut(s)	1585
Bse1I	ACTGG	4 cut(s)	89, 1577, 1666, 2263
BseAI	TCCGGA	1 cut(s)	620
BseBI	CCWGG	4 cut(s)	747, 771, 1256, 1461
BseDI	CCNNGG	6 cut(s)	345, 824, 1094, 1210, 1254, 1765
BseGI	GGATG	5 cut(s)	497, 520, 1036, 1206, 1630
BseLI	CCNNNNNNNGG	6 cut(s)	704, 725, 830, 1216, 1478, 2014
BseNI	ACTGG	4 cut(s)	89, 1577, 1666, 2263
BseRI	GAGGAG	1 cut(s)	882
BseXI	GCAGC	9 cut(s)	349, 750, 1190, 1313, 1476, 1527, 1576, 1799, 1996
BseYI	CCCAGC	1 cut(s)	944
BsgI	GTGCAG	4 cut(s)	65, 632, 1320, 1343
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	6 cut(s)	37, 787, 1291, 1437, 1808, 2082
BshNI	GGYRCC	1 cut(s)	2255
BsiHKAI	GWGCWC	3 cut(s)	649, 1843, 2128
BsiHKCI	CYCGRG	1 cut(s)	864
BsiSI	CCGG	5 cut(s)	226, 257, 621, 629, 1586
BslFI	GGGAC	2 cut(s)	112, 1950
BslI	CCNNNNNNNGG	6 cut(s)	704, 725, 830, 1216, 1478, 2014
BsmAI	GTCTC	3 cut(s)	215, 533, 1072
BsmFI	GGGAC	2 cut(s)	112, 1950
BsmI	GAATGC	3 cut(s)	1488, 1789, 1957
BsnI	GGCC	6 cut(s)	37, 787, 1291, 1437, 1808, 2082
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	864
Bsp1286I	GDGCHC	6 cut(s)	263, 345, 649, 754, 1843, 2128
Bsp13I	TCCGGA	1 cut(s)	620
Bsp1720I	GCTNAGC	3 cut(s)	1842, 2019, 2100
Bsp19I	CCATGG	1 cut(s)	824
BspACI	CCGC	6 cut(s)	16, 66, 100, 567, 890, 1087
BspANI	GGCC	6 cut(s)	37, 787, 1291, 1437, 1808, 2082
BspEI	TCCGGA	1 cut(s)	620
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	7 cut(s)	342, 351, 751, 798, 1012, 1882, 2257
BspPI	GGATC	5 cut(s)	715, 878, 1526, 1756, 2143
BspQI	GCTCTTC	1 cut(s)	1308
BspT107I	GGYRCC	1 cut(s)	2255
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	1585
BsrI	ACTGG	4 cut(s)	89, 1577, 1666, 2263
BssAI	RCCGGY	1 cut(s)	1585
BssECI	CCNNGG	6 cut(s)	345, 824, 1094, 1210, 1254, 1765
BssNAI	GTATAC	1 cut(s)	149
BssT1I	CCWWGG	4 cut(s)	345, 824, 1094, 1210
Bst1107I	GTATAC	1 cut(s)	149
Bst2UI	CCWGG	4 cut(s)	747, 771, 1256, 1461
Bst4CI	ACNGT	8 cut(s)	43, 108, 139, 241, 359, 993, 1616, 2174
Bst6I	CTCTTC	2 cut(s)	213, 1308
BstBAI	YACGTR	3 cut(s)	545, 686, 2199
BstC8I	GCNNGC	4 cut(s)	1469, 1513, 1587, 2193
BstDSI	CCRYGG	2 cut(s)	824, 1765
BstENI	CCTNNNNNAGG	2 cut(s)	1214, 1476
BstF5I	GGATG	5 cut(s)	497, 520, 1036, 1206, 1630
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	1444, 1984
BstMAI	GTCTC	3 cut(s)	215, 533, 1072
BstMWI	GCNNNNNNNGC	9 cut(s)	43, 349, 371, 644, 820, 1079, 1355, 1508, 1814
BstNI	CCWGG	4 cut(s)	747, 771, 1256, 1461
BstNSI	RCATGY	1 cut(s)	1427
BstSCI	CCNGG	6 cut(s)	224, 256, 745, 769, 1254, 1459
BstSNI	TACGTA	1 cut(s)	2199
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	9 cut(s)	349, 750, 1190, 1313, 1476, 1527, 1576, 1799, 1996
BstV2I	GAAGAC	2 cut(s)	102, 488
BstX2I	RGATCY	2 cut(s)	409, 1761
BstXI	CCANNNNNNTGG	1 cut(s)	825
BstYI	RGATCY	2 cut(s)	409, 1761
BstZ17I	GTATAC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	589
BsuRI	GGCC	6 cut(s)	37, 787, 1291, 1437, 1808, 2082
BtgI	CCRYGG	2 cut(s)	824, 1765
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	5 cut(s)	497, 520, 1036, 1206, 1630
BtsI	GCAGTG	2 cut(s)	1394, 1653
BtsIMutI	CAGTG	4 cut(s)	355, 1394, 1621, 1653
Cac8I	GCNNGC	4 cut(s)	1469, 1513, 1587, 2193
CaiI	CAGNNNCTG	1 cut(s)	245
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	2 cut(s)	1444, 1984
Cfr10I	RCCGGY	1 cut(s)	1585
Cfr13I	GGNCC	7 cut(s)	228, 1436, 1454, 1706, 1769, 1807, 2081
Csp6I	GTAC	4 cut(s)	1273, 2086, 2200, 2266
CviAII	CATG	8 cut(s)	389, 825, 896, 1022, 1424, 1553, 1813, 1919
CviQI	GTAC	4 cut(s)	1273, 2086, 2200, 2266
DraI	TTTAAA	1 cut(s)	52
DraIII	CACNNNGTG	4 cut(s)	359, 1400, 1499, 2165
Eam1104I	CTCTTC	2 cut(s)	213, 1308
EarI	CTCTTC	2 cut(s)	213, 1308
Eco105I	TACGTA	1 cut(s)	2199
Eco130I	CCWWGG	4 cut(s)	345, 824, 1094, 1210
Eco147I	AGGCCT	1 cut(s)	1291
Eco24I	GRGCYC	3 cut(s)	263, 345, 754
Eco31I	GGTCTC	1 cut(s)	215
Eco32I	GATATC	3 cut(s)	618, 1329, 1574
Eco47I	GGWCC	4 cut(s)	228, 1454, 1706, 1769
Eco57I	CTGAAG	5 cut(s)	96, 894, 1106, 1326, 1787
Eco72I	CACGTG	1 cut(s)	545
Eco88I	CYCGRG	1 cut(s)	864
EcoNI	CCTNNNNNAGG	2 cut(s)	1214, 1476
EcoO109I	RGGNCCY	1 cut(s)	1807
EcoRII	CCWGG	4 cut(s)	745, 769, 1254, 1459
EcoRV	GATATC	3 cut(s)	618, 1329, 1574
EcoT14I	CCWWGG	4 cut(s)	345, 824, 1094, 1210
EcoT22I	ATGCAT	1 cut(s)	1036
EcoT38I	GRGCYC	3 cut(s)	263, 345, 754
ErhI	CCWWGG	4 cut(s)	345, 824, 1094, 1210
FaeI	CATG	8 cut(s)	392, 828, 899, 1025, 1427, 1556, 1816, 1922
FalI	AAGNNNNNCTT	4 cut(s)	329, 361, 360, 392
FaqI	GGGAC	2 cut(s)	112, 1950
FatI	CATG	8 cut(s)	388, 824, 895, 1021, 1423, 1552, 1812, 1918
FauI	CCCGC	2 cut(s)	574, 883
FbaI	TGATCA	3 cut(s)	1164, 1774, 1900
FblI	GTMKAC	3 cut(s)	148, 662, 1549
FokI	GGATG	5 cut(s)	504, 527, 1043, 1193, 1637
FriOI	GRGCYC	3 cut(s)	263, 345, 754
FspBI	CTAG	4 cut(s)	470, 500, 1173, 1497
FspI	TGCGCA	2 cut(s)	1443, 1983
GlaI	GCGC	2 cut(s)	1443, 1983
GsaI	CCCAGC	1 cut(s)	948
GsuI	CTGGAG	1 cut(s)	1434
HaeIII	GGCC	6 cut(s)	37, 787, 1291, 1437, 1808, 2082
HapII	CCGG	5 cut(s)	226, 257, 621, 629, 1586
HhaI	GCGC	2 cut(s)	1444, 1984
Hin1II	CATG	8 cut(s)	392, 828, 899, 1025, 1427, 1556, 1816, 1922
Hin6I	GCGC	2 cut(s)	1442, 1982
HinP1I	GCGC	2 cut(s)	1442, 1982
HincII	GTYRAC	1 cut(s)	1612
HindII	GTYRAC	1 cut(s)	1612
HindIII	AAGCTT	1 cut(s)	906
HpaII	CCGG	5 cut(s)	226, 257, 621, 629, 1586
HphI	GGTGA	2 cut(s)	893, 1895
Hpy166II	GTNNAC	5 cut(s)	149, 663, 1273, 1550, 1612
Hpy188I	TCNGA	5 cut(s)	265, 678, 1048, 1153, 1900
Hpy188III	TCNNGA	9 cut(s)	114, 389, 621, 855, 1028, 1168, 1377, 1704, 1772
Hpy8I	GTNNAC	5 cut(s)	149, 663, 1273, 1550, 1612
HpyAV	CCTTC	3 cut(s)	810, 1239, 1811
HpyCH4III	ACNGT	8 cut(s)	43, 108, 139, 241, 359, 993, 1616, 2174
HpyCH4IV	ACGT	7 cut(s)	544, 633, 685, 1054, 1373, 1750, 2198
HpyF10VI	GCNNNNNNNGC	9 cut(s)	43, 349, 371, 644, 820, 1079, 1355, 1508, 1814
HpySE526I	ACGT	7 cut(s)	544, 633, 685, 1054, 1373, 1750, 2198
Hsp92II	CATG	8 cut(s)	392, 828, 899, 1025, 1427, 1556, 1816, 1922
HspAI	GCGC	2 cut(s)	1442, 1982
Kpn2I	TCCGGA	1 cut(s)	620
KroI	GCCGGC	1 cut(s)	1585
KroNI	GCCGGC	1 cut(s)	1587
Ksp22I	TGATCA	3 cut(s)	1164, 1774, 1900
LguI	GCTCTTC	1 cut(s)	1308
Lsp1109I	GCAGC	9 cut(s)	349, 750, 1190, 1313, 1476, 1527, 1576, 1799, 1996
LweI	GCATC	6 cut(s)	361, 682, 1021, 1043, 1215, 1345
MaeI	CTAG	4 cut(s)	470, 500, 1173, 1497
MaeII	ACGT	7 cut(s)	544, 633, 685, 1054, 1373, 1750, 2198
MaeIII	GTNAC	4 cut(s)	424, 457, 993, 2174
MbiI	CCGCTC	1 cut(s)	66
MfeI	CAATTG	1 cut(s)	1107
MflI	RGATCY	2 cut(s)	409, 1761
MhlI	GDGCHC	6 cut(s)	263, 345, 649, 754, 1843, 2128
MlyI	GAGTC	4 cut(s)	282, 1037, 1617, 1721
Mph1103I	ATGCAT	1 cut(s)	1036
MroI	TCCGGA	1 cut(s)	620
MroNI	GCCGGC	1 cut(s)	1585
MroXI	GAANNNNTTC	1 cut(s)	847
MseI	TTAA	5 cut(s)	51, 876, 981, 1233, 2181
MslI	CAYNNNNRTG	2 cut(s)	1923, 2067
MspA1I	CMGCKG	3 cut(s)	914, 944, 1304
MspI	CCGG	5 cut(s)	226, 257, 621, 629, 1586
MspR9I	CCNGG	6 cut(s)	226, 258, 747, 771, 1256, 1461
MunI	CAATTG	1 cut(s)	1107
Mva1269I	GAATGC	3 cut(s)	1488, 1789, 1957
MvaI	CCWGG	4 cut(s)	747, 771, 1256, 1461
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	9 cut(s)	43, 349, 371, 644, 820, 1079, 1355, 1508, 1814
NaeI	GCCGGC	1 cut(s)	1587
NciI	CCSGG	2 cut(s)	226, 258
NcoI	CCATGG	1 cut(s)	824
NgoMIV	GCCGGC	1 cut(s)	1585
NlaIII	CATG	8 cut(s)	392, 828, 899, 1025, 1427, 1556, 1816, 1922
NlaIV	GGNNCC	7 cut(s)	342, 351, 751, 798, 1012, 1882, 2257
NmeAIII	GCCGAG	1 cut(s)	1852
NmuCI	GTSAC	1 cut(s)	457
NsbI	TGCGCA	2 cut(s)	1443, 1983
NsiI	ATGCAT	1 cut(s)	1036
NspI	RCATGY	1 cut(s)	1427
PaeR7I	CTCGAG	1 cut(s)	864
PagI	TCATGA	1 cut(s)	388
PceI	AGGCCT	1 cut(s)	1291
PciSI	GCTCTTC	1 cut(s)	1308
PcsI	WCGNNNNNNNCGW	2 cut(s)	1060, 1747
PctI	GAATGC	3 cut(s)	1488, 1789, 1957
PdiI	GCCGGC	1 cut(s)	1587
PdmI	GAANNNNTTC	1 cut(s)	847
PfeI	GAWTC	7 cut(s)	248, 332, 679, 1060, 1090, 1633, 1652
PflFI	GACNNNGTC	1 cut(s)	226
PleI	GAGTC	4 cut(s)	281, 1037, 1616, 1721
PmaCI	CACGTG	1 cut(s)	545
PmlI	CACGTG	1 cut(s)	545
PpsI	GAGTC	4 cut(s)	281, 1037, 1616, 1721
Ppu21I	YACGTR	3 cut(s)	545, 686, 2199
PshBI	ATTAAT	1 cut(s)	1233
PsiI	TTATAA	1 cut(s)	417
Psp6I	CCWGG	4 cut(s)	745, 769, 1254, 1459
PspCI	CACGTG	1 cut(s)	545
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	4 cut(s)	745, 769, 1254, 1459
PspN4I	GGNNCC	7 cut(s)	342, 351, 751, 798, 1012, 1882, 2257
PspPI	GGNCC	7 cut(s)	228, 1436, 1454, 1706, 1769, 1807, 2081
PspXI	VCTCGAGB	1 cut(s)	864
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	409, 1761
PsyI	GACNNNGTC	1 cut(s)	226
PvuII	CAGCTG	3 cut(s)	914, 944, 1304
RsaI	GTAC	4 cut(s)	1274, 2087, 2201, 2267
RsaNI	GTAC	4 cut(s)	1273, 2086, 2200, 2266
RseI	CAYNNNNRTG	2 cut(s)	1923, 2067
SapI	GCTCTTC	1 cut(s)	1308
SaqAI	TTAA	5 cut(s)	51, 876, 981, 1233, 2181
Sau96I	GGNCC	7 cut(s)	228, 1436, 1454, 1706, 1769, 1807, 2081
SchI	GAGTC	4 cut(s)	282, 1037, 1617, 1721
ScrFI	CCNGG	6 cut(s)	226, 258, 747, 771, 1256, 1461
SduI	GDGCHC	6 cut(s)	263, 345, 649, 754, 1843, 2128
SfaNI	GCATC	6 cut(s)	361, 682, 1021, 1043, 1215, 1345
Sfr274I	CTCGAG	1 cut(s)	864
SinI	GGWCC	4 cut(s)	228, 1454, 1706, 1769
SlaI	CTCGAG	1 cut(s)	864
SmiMI	CAYNNNNRTG	2 cut(s)	1923, 2067
SmlI	CTYRAG	1 cut(s)	864
SmoI	CTYRAG	1 cut(s)	864
SnaBI	TACGTA	1 cut(s)	2199
SseBI	AGGCCT	1 cut(s)	1291
SsiI	CCGC	6 cut(s)	16, 66, 100, 567, 890, 1087
SspI	AATATT	2 cut(s)	451, 1018
SspMI	CTAG	4 cut(s)	470, 500, 1173, 1497
StuI	AGGCCT	1 cut(s)	1291
StyD4I	CCNGG	6 cut(s)	224, 256, 745, 769, 1254, 1459
StyI	CCWWGG	4 cut(s)	345, 824, 1094, 1210
TaaI	ACNGT	8 cut(s)	43, 108, 139, 241, 359, 993, 1616, 2174
TaiI	ACGT	7 cut(s)	547, 636, 688, 1057, 1376, 1753, 2201
TaqI	TCGA	7 cut(s)	132, 865, 1077, 1190, 1277, 1525, 1972
TaqII	GACCGA	1 cut(s)	1723
TatI	WGTACW	1 cut(s)	1272
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	7 cut(s)	248, 332, 679, 1060, 1090, 1633, 1652
Tru1I	TTAA	5 cut(s)	51, 876, 981, 1233, 2181
Tru9I	TTAA	5 cut(s)	51, 876, 981, 1233, 2181
TscAI	CASTG	4 cut(s)	362, 1401, 1621, 1653
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	9 cut(s)	362, 763, 1203, 1301, 1464, 1515, 1589, 1787, 1984
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	9 cut(s)	342, 377, 618, 669, 728, 1010, 1326, 1569, 1964
TspGWI	ACGGA	1 cut(s)	1754
TspRI	CASTG	4 cut(s)	362, 1401, 1621, 1653
Tth111I	GACNNNGTC	1 cut(s)	226
VpaK11BI	GGWCC	4 cut(s)	228, 1454, 1706, 1769
VspI	ATTAAT	1 cut(s)	1233
XagI	CCTNNNNNAGG	2 cut(s)	1214, 1476
XapI	RAATTY	3 cut(s)	118, 303, 1718
XceI	RCATGY	1 cut(s)	1427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	822
XhoI	CTCGAG	1 cut(s)	864
XmiI	GTMKAC	3 cut(s)	148, 662, 1549
XmnI	GAANNNNTTC	1 cut(s)	847
XspI	CTAG	4 cut(s)	470, 500, 1173, 1497
Zsp2I	ATGCAT	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.