Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004505

Physical Location & Seq

Genomic Coordinates Reverse (-)

29776488 .. 29778959

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1249200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTTTCTGAGAAAGGGGCAAGTTTCTTTTACATTTCTTTTATTGCATCACTGCCTCTATAGGAGGTCAGGATCAGAAATGTTTTTCTTTTCTTTTGAAACCATTCAGATCCTTGCTGATGCTTTGCCGAAGATTGTTCCTTATGTTTTGATTAACCATCGGGAGGCATGTGTTAACCTTGCTAAGAATGTAGGAGAGATGAGAACAGGAACAGAATTGGTTCCCCAGTGTTGGGAACAAATAAATCTTATGTATGAGGAACGCAGGCTGCTAGTTGCTCAATCATGTGGAGAGTTTGCAGAGTTTGTCTGGCCTGAGATTCGTGATTCTCTTATACGTAATCTCACATTGCTGCTTCCACTCTTCCCGACCATGGACACATATTTCAAGGTCGAGGAATTGATGTTCCAATTGGTCTGTGATCCCTCTGGAGTGGTGGTGGAAACGACGCTTAAGCAATTAGTCCCTGCAGTAAACAAGTGGGGAAACAAATTAGACCATATCTTAAGAGTTCTACTCTCATATATCAAGCTCTGTTCAGGTCAGTTTCGCTGTCCTCCTCTTTCGGGCGTTGAAGGTTCTGTGGAGTCACATCTTCATGTTTTAGGTGAACGAGAACGCTGGAATGTTGATGTTTTACCACGAATGCTAGAGGAAATTCTTCCATATGTGCACCAGAAAGCAATTGAGATGTGCCCAGTTTCTTCTGATCCCGAAACAGCTGGAACAATATTTTCCAAATCTTTCCTTGAATTGTATGCAGGTGGACATGTTCAATTGCCTGCATTTGAGTGGCTACATGTCGACTGCTTTCCTGCTTTAATACAGCTCGCATGTTTGTTACCTCCAAAAGAGGACAATTTGCGAAGCCAAATCACCAAGTTTCTATTGGCTGTATCAGAACTCTACGGGGATTCTTATTTGACACACATAATGCTGCCTGTATTCTTGTTAGCTGTTGGGGAAGAAGCTGAATTGACATTTTTCCCATCCGCAACGCATTCCGGAATCAAAGGTTTGAGGCCAAGAACGACTGTGGCTAAGAGATTGGCTACTATGTGTGTCCTACCTCTTCTCTTGGCTGGTGTTTTGGGTGGTCCAAGTAAGCATGAACAATTGGTCGAGTATCTGAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

42.99

Weight (kDa)

6.08

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16210
fragaria_vesca	FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990
malus_domestica	MD09G1255900.v1.1 MD17G1249200.v1.1 MD17G1249700.v1.1 MD17G1249900.v1.1
prunus_persica	Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1
pyrus_communis	pycom09g17170 pycom09g17180 pycom17g25370
rosa_chinensis	RchiOBHm_Chr3g0494111 RchiOBHm_Chr3g0494121
rosa_laevigata	RLG00000022677
rosa_multiflora	Rmu_sc0010318.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243540 Rroxscaffold_6G00391260
rosa_rugosa	Rorug03G0264300 Rorug03G0264400
rosa_samantha	Rh3AG314100 Rh3BG349900 Rh3CG346800 Rh3DG349300
rosa_wichuraiana	Rw3G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	752
Acc36I	ACCTGC	1 cut(s)	752
AccI	GTMKAC	1 cut(s)	804
AccIII	TCCGGA	1 cut(s)	1004
AciI	CCGC	1 cut(s)	993
AclWI	GGATC	4 cut(s)	79, 103, 416, 704
AcsI	RAATTY	1 cut(s)	657
AfiI	CCNNNNNNNGG	5 cut(s)	163, 231, 232, 373, 566
AflII	CTTAAG	2 cut(s)	452, 505
AflIII	ACRYGT	2 cut(s)	769, 799
AgsI	TTSAA	5 cut(s)	98, 388, 575, 752, 776
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	5 cut(s)	532, 722, 829, 956, 971
AluI	AGCT	5 cut(s)	532, 722, 829, 956, 971
Alw21I	GWGCWC	1 cut(s)	675
Alw44I	GTGCAC	1 cut(s)	671
AlwI	GGATC	4 cut(s)	79, 103, 416, 704
Aor13HI	TCCGGA	1 cut(s)	1004
AoxI	GGCC	2 cut(s)	311, 1022
ApaLI	GTGCAC	1 cut(s)	671
ApeKI	GCWGC	3 cut(s)	268, 352, 937
ApoI	RAATTY	1 cut(s)	657
Asp700I	GAANNNNTTC	3 cut(s)	102, 219, 660
AspS9I	GGNCC	1 cut(s)	1097
AsuHPI	GGTGA	2 cut(s)	620, 868
AvaII	GGWCC	1 cut(s)	1097
BaeGI	GKGCMC	2 cut(s)	675, 698
Bbv12I	GWGCWC	1 cut(s)	675
BbvI	GCAGC	3 cut(s)	255, 339, 924
BccI	CCATC	2 cut(s)	165, 997
BfaI	CTAG	2 cut(s)	272, 650
BfmI	CTRYAG	2 cut(s)	58, 468
BfrI	CTTAAG	2 cut(s)	452, 505
BfuAI	ACCTGC	1 cut(s)	752
BisI	GCNGC	3 cut(s)	269, 353, 938
BlsI	GCNGC	3 cut(s)	270, 354, 939
Bme18I	GGWCC	1 cut(s)	1097
BmgT120I	GGNCC	1 cut(s)	1097
BmiI	GGNNCC	1 cut(s)	222
BmrI	ACTGGG	2 cut(s)	220, 692
BmsI	GCATC	2 cut(s)	55, 109
BmuI	ACTGGG	2 cut(s)	220, 692
BplI	GAGNNNNNCTC	2 cut(s)	501, 533
BpmI	CTGGAG	1 cut(s)	450
BsaAI	YACGTR	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	1004
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	5 cut(s)	163, 231, 232, 373, 566
Bse1I	ACTGG	2 cut(s)	226, 698
Bse3DI	GCAATG	1 cut(s)	347
BseAI	TCCGGA	1 cut(s)	1004
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	989
BseLI	CCNNNNNNNGG	5 cut(s)	163, 231, 232, 373, 566
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	2 cut(s)	306, 1121
BseNI	ACTGG	2 cut(s)	226, 698
BseRI	GAGGAG	1 cut(s)	549
BseSI	GKGCMC	2 cut(s)	675, 698
BseXI	GCAGC	3 cut(s)	255, 339, 924
BshFI	GGCC	2 cut(s)	313, 1024
BsiHKAI	GWGCWC	1 cut(s)	675
BsiSI	CCGG	1 cut(s)	1005
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	5 cut(s)	163, 231, 232, 373, 566
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	2 cut(s)	651, 1000
BsnI	GGCC	2 cut(s)	313, 1024
Bsp1286I	GDGCHC	2 cut(s)	675, 698
Bsp13I	TCCGGA	1 cut(s)	1004
Bsp143I	GATC	4 cut(s)	71, 108, 421, 709
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	1 cut(s)	993
BspANI	GGCC	2 cut(s)	313, 1024
BspCNI	CTCAG	2 cut(s)	307, 1122
BspEI	TCCGGA	1 cut(s)	1004
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	472
BspMI	ACCTGC	1 cut(s)	752
BspPI	GGATC	4 cut(s)	79, 103, 416, 704
BspTI	CTTAAG	2 cut(s)	452, 505
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	226, 698
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	4 cut(s)	71, 108, 421, 709
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	1036
Bst6I	CTCTTC	2 cut(s)	368, 1077
BstAFI	CTTAAG	2 cut(s)	452, 505
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	266, 783, 831
BstDEI	CTNAG	5 cut(s)	8, 183, 315, 1041, 1130
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	989
BstKTI	GATC	4 cut(s)	74, 111, 424, 712
BstMBI	GATC	4 cut(s)	71, 108, 421, 709
BstNSI	RCATGY	4 cut(s)	171, 773, 803, 837
BstSFI	CTRYAG	2 cut(s)	58, 468
BstSLI	GKGCMC	2 cut(s)	675, 698
BstSNI	TACGTA	1 cut(s)	338
BstV1I	GCAGC	3 cut(s)	255, 339, 924
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	313, 1024
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	989
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 233
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	3 cut(s)	266, 783, 831
Cfr13I	GGNCC	1 cut(s)	1097
CseI	GACGC	1 cut(s)	457
CviAII	CATG	8 cut(s)	168, 285, 373, 599, 770, 800, 834, 1109
DdeI	CTNAG	5 cut(s)	8, 183, 315, 1041, 1130
DpnI	GATC	4 cut(s)	73, 110, 423, 711
DpnII	GATC	4 cut(s)	71, 108, 421, 709
Eam1104I	CTCTTC	2 cut(s)	368, 1077
EarI	CTCTTC	2 cut(s)	368, 1077
Eco105I	TACGTA	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	1097
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	8 cut(s)	171, 288, 376, 602, 773, 803, 837, 1112
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	8 cut(s)	167, 284, 372, 598, 769, 799, 833, 1108
FauNDI	CATATG	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	804
Fnu4HI	GCNGC	3 cut(s)	269, 353, 938
FokI	GGATG	1 cut(s)	976
Fsp4HI	GCNGC	3 cut(s)	269, 353, 938
FspBI	CTAG	2 cut(s)	272, 650
GluI	GCNGC	3 cut(s)	269, 353, 938
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	313, 1024
HapII	CCGG	1 cut(s)	1005
HgaI	GACGC	1 cut(s)	457
Hin1II	CATG	8 cut(s)	171, 288, 376, 602, 773, 803, 837, 1112
HincII	GTYRAC	2 cut(s)	175, 805
HindII	GTYRAC	2 cut(s)	175, 805
HinfI	GANTC	5 cut(s)	319, 326, 587, 914, 1008
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	1005
HphI	GGTGA	2 cut(s)	620, 868
Hpy166II	GTNNAC	6 cut(s)	175, 475, 611, 673, 767, 805
Hpy188I	TCNGA	6 cut(s)	9, 76, 108, 709, 901, 1131
Hpy188III	TCNNGA	7 cut(s)	69, 161, 323, 367, 429, 713, 1005
Hpy8I	GTNNAC	6 cut(s)	175, 475, 611, 673, 767, 805
Hpy99I	CGWCG	1 cut(s)	451
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	1 cut(s)	1036
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	6 cut(s)	46, 299, 470, 673, 761, 785
HpyF3I	CTNAG	5 cut(s)	8, 183, 315, 1041, 1130
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	8 cut(s)	171, 288, 376, 602, 773, 803, 837, 1112
Kpn2I	TCCGGA	1 cut(s)	1004
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	71, 108, 421, 709
Lsp1109I	GCAGC	3 cut(s)	255, 339, 924
LweI	GCATC	2 cut(s)	55, 109
MaeI	CTAG	2 cut(s)	272, 650
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	2 cut(s)	588, 840
MalI	GATC	4 cut(s)	73, 110, 423, 711
MboI	GATC	4 cut(s)	71, 108, 421, 709
MboII	GAAGA	7 cut(s)	142, 355, 587, 653, 696, 977, 1064
MfeI	CAATTG	4 cut(s)	410, 684, 776, 1115
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	2 cut(s)	675, 698
MlyI	GAGTC	1 cut(s)	596
MroI	TCCGGA	1 cut(s)	1004
MroXI	GAANNNNTTC	3 cut(s)	102, 219, 660
MseI	TTAA	5 cut(s)	153, 174, 453, 506, 821
MslI	CAYNNNNRTG	2 cut(s)	597, 790
MspA1I	CMGCKG	1 cut(s)	722
MspCI	CTTAAG	2 cut(s)	452, 505
MspI	CCGG	1 cut(s)	1005
MunI	CAATTG	4 cut(s)	410, 684, 776, 1115
Mva1269I	GAATGC	2 cut(s)	651, 1000
NcoI	CCATGG	1 cut(s)	372
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	4 cut(s)	71, 108, 421, 709
NlaIII	CATG	8 cut(s)	171, 288, 376, 602, 773, 803, 837, 1112
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	588
NspI	RCATGY	4 cut(s)	171, 773, 803, 837
PaqCI	CACCTGC	1 cut(s)	752
PciI	ACATGT	2 cut(s)	769, 799
PctI	GAATGC	2 cut(s)	651, 1000
PdmI	GAANNNNTTC	3 cut(s)	102, 219, 660
PfeI	GAWTC	4 cut(s)	319, 326, 914, 1008
PkrI	GCNGC	3 cut(s)	270, 354, 939
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
Ppu21I	YACGTR	1 cut(s)	338
PscI	ACATGT	2 cut(s)	769, 799
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	1097
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	108
PvuII	CAGCTG	1 cut(s)	722
RseI	CAYNNNNRTG	2 cut(s)	597, 790
SalI	GTCGAC	1 cut(s)	803
SaqAI	TTAA	5 cut(s)	153, 174, 453, 506, 821
SatI	GCNGC	3 cut(s)	269, 353, 938
Sau3AI	GATC	4 cut(s)	71, 108, 421, 709
Sau96I	GGNCC	1 cut(s)	1097
SchI	GAGTC	1 cut(s)	596
SduI	GDGCHC	2 cut(s)	675, 698
SfaNI	GCATC	2 cut(s)	55, 109
SfcI	CTRYAG	2 cut(s)	58, 468
SinI	GGWCC	1 cut(s)	1097
SmiMI	CAYNNNNRTG	2 cut(s)	597, 790
SmlI	CTYRAG	2 cut(s)	452, 505
SmoI	CTYRAG	2 cut(s)	452, 505
SnaBI	TACGTA	1 cut(s)	338
SsiI	CCGC	1 cut(s)	993
SspI	AATATT	1 cut(s)	732
SspMI	CTAG	2 cut(s)	272, 650
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	1036
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	3 cut(s)	393, 804, 1122
TfiI	GAWTC	4 cut(s)	319, 326, 914, 1008
Tru1I	TTAA	5 cut(s)	153, 174, 453, 506, 821
Tru9I	TTAA	5 cut(s)	153, 174, 453, 506, 821
TscAI	CASTG	2 cut(s)	56, 233
TseFI	GTSAC	1 cut(s)	588
TseI	GCWGC	3 cut(s)	268, 352, 937
Tsp45I	GTSAC	1 cut(s)	588
TspDTI	ATGAA	2 cut(s)	587, 1125
TspRI	CASTG	2 cut(s)	56, 233
Vha464I	CTTAAG	2 cut(s)	452, 505
VneI	GTGCAC	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	1097
XapI	RAATTY	1 cut(s)	657
XceI	RCATGY	4 cut(s)	171, 773, 803, 837
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XmiI	GTMKAC	1 cut(s)	804
XmnI	GAANNNNTTC	3 cut(s)	102, 219, 660
XspI	CTAG	2 cut(s)	272, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.