Rorug03G0264400

LisH domain and HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004505
Physical Location & Seq
Reverse (-)
25687326 .. 25691431
4106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0264400.1

Sequence Viewer

Length: 1122 bp
ATGACCACCTCCCACACCCTCCTCTCGCAGACCCATGGCCAAGCTGGACCTCCACGGCACCGCCACCAAGCCCAAGGAGGCCAAGCTCTAGGGCGGCCGCTTCGAGGAAGGAATCACCGACGCCGTCGAGCCCTTCACCTAGGATTCATCACTGTTGAGGATCTGTTGAGGATAGGGATGGCATTCATGAAGAGCTTACGGAGATGCAGAGGCGAATTGAGGAATGATAGGGAAGACGTATTAAACATCTACAACTTTTTGATGATTTGTCTGGGGACGAAGAATGAGGGTTTGATTGTTCCTGGCTACACACATTTGCAGCGGGCTCAACCTGTTTTGTTTCAGCATTTGCTCTTGGCTTCGTTGAGCAGATGCAGAAACTTGCCACCAACACAGAATGCTATAAATACTGAAATTAAATCCAAAGGACAAGGGAGATTGGCTAGAAGGGTTTACATTGTCTATATGGGAGAAAGAAAGTATGGAAACCCCGAGCTGGCATCTGAGTCTCACCATGAGATTCTGTCATATGTATTTGGAAGGGAAATATTTCCCACTTCCTCTTCAGGAACGAACAATATTTTTGTTCAGTTGTCTCCCTTTGGTCTAGTCTCATGTTGCCTCAACTCCTTTGTCTTAGATGTCACTGAAATTCTGTCTGATCTTGAGCTTTCGATTCAAAGGGTGAAAGTGACAACAACACCAGATGACAGGGTCTTGGACCTGTTCTTCATAACAGATAACATGGATCTTCTGCACACAAAGGAGCGGCAAGATAAGACATTGAAACAGTTGCAAGCCGTATTGGGTGAGTCGTGTACCAGTTGCGAACTTCAGTTGGTAGGTCCTCAGTATGATCCCCACCATGGCATTCCTTCTCTGTCTCCATTAGTAGCTGAAGAGCTATTTAGGTGTGAGCTGTTGGATAAAGAAATCCGTTCTCAAGCTCTTAGTCCTGATATGACGAAATTGAAGAACGCTAATGTAACAATAGACAACTCATTGAGCCCAGCACATACATTACTTCAGATCCACTGTGCTGATCACAAGGGTCTCTTGTATGACATTATGAGAATTTTGAAAGACAACAACATCAAGCACGTGCCTGTCCTGGAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

42.25

Weight (kDa)

8.82

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT_ACR9_3rd PF24931 328 - 366 1.2e-17 ACR9-like, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 57
AccBSI CCGCTC 1 cut(s) 769
AciI CCGC 5 cut(s) 61, 94, 98, 322, 769
AclWI GGATC 4 cut(s) 168, 756, 851, 1024
AcoI YGGCCR 2 cut(s) 37, 95
AcsI RAATTY 2 cut(s) 651, 1074
AcuI CTGAAG 4 cut(s) 549, 818, 918, 1010
AcvI CACGTG 1 cut(s) 1102
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 1 cut(s) 820
AfiI CCNNNNNNNGG 3 cut(s) 104, 496, 866
AgsI TTSAA 4 cut(s) 680, 787, 973, 1081
AjnI CCWGG 2 cut(s) 301, 1110
AluBI AGCT 9 cut(s) 44, 86, 195, 496, 670, 896, 904, 919, 947
AluI AGCT 9 cut(s) 44, 86, 195, 496, 670, 896, 904, 919, 947
Alw26I GTCTC 5 cut(s) 513, 600, 616, 888, 1058
AlwI GGATC 4 cut(s) 168, 756, 851, 1024
Ama87I CYCGRG 1 cut(s) 491
AoxI GGCC 3 cut(s) 37, 79, 95
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 2 cut(s) 651, 1074
Asp700I GAANNNNTTC 1 cut(s) 549
AspA2I CCTAGG 1 cut(s) 139
AspS9I GGNCC 3 cut(s) 47, 721, 845
AsuHPI GGTGA 5 cut(s) 107, 128, 503, 697, 821
AvaI CYCGRG 1 cut(s) 491
AvaII GGWCC 3 cut(s) 47, 721, 845
AvrII CCTAGG 1 cut(s) 139
BalI TGGCCA 1 cut(s) 39
BanI GGYRCC 1 cut(s) 57
BanII GRGCYC 3 cut(s) 133, 328, 1010
BbrPI CACGTG 1 cut(s) 1102
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 172
BceAI ACGGC 3 cut(s) 71, 108, 785
BciT130I CCWGG 2 cut(s) 303, 1112
BclI TGATCA 1 cut(s) 1042
BcoDI GTCTC 5 cut(s) 513, 600, 616, 888, 1058
BfaI CTAG 4 cut(s) 89, 140, 444, 608
BisI GCNGC 4 cut(s) 95, 98, 320, 770
BlnI CCTAGG 1 cut(s) 139
BlsI GCNGC 4 cut(s) 96, 99, 321, 771
Bme1390I CCNGG 2 cut(s) 303, 1112
Bme18I GGWCC 3 cut(s) 47, 721, 845
BmeT110I CYCGRG 1 cut(s) 491
BmgT120I GGNCC 3 cut(s) 47, 721, 845
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 2 cut(s) 303, 1112
BmsI GCATC 3 cut(s) 194, 362, 509
BpiI GAAGAC 1 cut(s) 240
BpuEI CTTGAG 2 cut(s) 686, 927
BsaAI YACGTR 1 cut(s) 1102
BsaHI GRCGYC 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 1058
BsaJI CCNNGG 5 cut(s) 34, 53, 73, 139, 865
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 496, 866
Bse1I ACTGG 1 cut(s) 822
BseBI CCWGG 2 cut(s) 303, 1112
BseDI CCNNGG 5 cut(s) 34, 53, 73, 139, 865
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 3 cut(s) 104, 496, 866
BseMII CTCAG 2 cut(s) 495, 863
BseNI ACTGG 1 cut(s) 822
BseRI GAGGAG 1 cut(s) 11
BseX3I CGGCCG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 331
BseYI CCCAGC 1 cut(s) 1009
BsgI GTGCAG 1 cut(s) 740
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 3 cut(s) 39, 81, 97
BshNI GGYRCC 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 491
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 3 cut(s) 104, 496, 866
BsmAI GTCTC 5 cut(s) 513, 600, 616, 888, 1058
BsmFI GGGAC 1 cut(s) 289
BsmI GAATGC 3 cut(s) 182, 403, 870
BsnI GGCC 3 cut(s) 39, 81, 97
Bso31I GGTCTC 1 cut(s) 1058
BsoBI CYCGRG 1 cut(s) 491
Bsp1286I GDGCHC 3 cut(s) 133, 328, 1010
Bsp143I GATC 6 cut(s) 160, 661, 748, 856, 1029, 1042
Bsp19I CCATGG 2 cut(s) 34, 865
BspACI CCGC 5 cut(s) 61, 94, 98, 322, 769
BspANI GGCC 3 cut(s) 39, 81, 97
BspCNI CTCAG 2 cut(s) 496, 862
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 59
BspPI GGATC 4 cut(s) 168, 756, 851, 1024
BspQI GCTCTTC 2 cut(s) 185, 894
BspT107I GGYRCC 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 1058
BsrBI CCGCTC 1 cut(s) 769
BsrI ACTGG 1 cut(s) 822
BssECI CCNNGG 5 cut(s) 34, 53, 73, 139, 865
BssMI GATC 6 cut(s) 160, 661, 748, 856, 1029, 1042
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 4 cut(s) 34, 73, 139, 865
Bst2UI CCWGG 2 cut(s) 303, 1112
Bst4CI ACNGT 3 cut(s) 154, 792, 1037
Bst6I CTCTTC 3 cut(s) 185, 568, 894
BstACI GRCGYC 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 1102
BstC8I GCNNGC 3 cut(s) 324, 498, 798
BstDEI CTNAG 4 cut(s) 504, 637, 849, 950
BstDSI CCRYGG 3 cut(s) 34, 53, 865
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 6 cut(s) 163, 664, 751, 859, 1032, 1045
BstMAI GTCTC 5 cut(s) 513, 600, 616, 888, 1058
BstMBI GATC 6 cut(s) 160, 661, 748, 856, 1029, 1042
BstMCI CGRYCG 1 cut(s) 98
BstNI CCWGG 2 cut(s) 303, 1112
BstSCI CCNGG 2 cut(s) 301, 1110
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 3 cut(s) 160, 748, 1029
BstYI RGATCY 3 cut(s) 160, 748, 1029
BstZI CGGCCG 1 cut(s) 95
BsuRI GGCC 3 cut(s) 39, 81, 97
BtgI CCRYGG 3 cut(s) 34, 53, 865
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 3 cut(s) 150, 645, 1033
Cac8I GCNNGC 3 cut(s) 324, 498, 798
CciI TCATGA 1 cut(s) 186
CciNI GCGGCCGC 1 cut(s) 95
Cfr13I GGNCC 3 cut(s) 47, 721, 845
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 819
CviAII CATG 6 cut(s) 35, 187, 515, 615, 745, 866
CviQI GTAC 1 cut(s) 819
DdeI CTNAG 4 cut(s) 504, 637, 849, 950
DpnI GATC 6 cut(s) 162, 663, 750, 858, 1031, 1044
DpnII GATC 6 cut(s) 160, 661, 748, 856, 1029, 1042
EaeI YGGCCR 2 cut(s) 37, 95
EagI CGGCCG 1 cut(s) 95
Eam1104I CTCTTC 3 cut(s) 185, 568, 894
EarI CTCTTC 3 cut(s) 185, 568, 894
EclXI CGGCCG 1 cut(s) 95
Eco130I CCWWGG 4 cut(s) 34, 73, 139, 865
Eco24I GRGCYC 3 cut(s) 133, 328, 1010
Eco31I GGTCTC 1 cut(s) 1058
Eco47I GGWCC 3 cut(s) 47, 721, 845
Eco52I CGGCCG 1 cut(s) 95
Eco57I CTGAAG 4 cut(s) 549, 818, 918, 1010
Eco72I CACGTG 1 cut(s) 1102
Eco88I CYCGRG 1 cut(s) 491
EcoO109I RGGNCCY 1 cut(s) 845
EcoRII CCWGG 2 cut(s) 301, 1110
EcoT14I CCWWGG 4 cut(s) 34, 73, 139, 865
EcoT38I GRGCYC 3 cut(s) 133, 328, 1010
ErhI CCWWGG 4 cut(s) 34, 73, 139, 865
FaeI CATG 6 cut(s) 38, 190, 518, 618, 748, 869
FalI AAGNNNNNCTT 2 cut(s) 1040, 1072
FaqI GGGAC 1 cut(s) 289
FatI CATG 6 cut(s) 34, 186, 514, 614, 744, 865
FauI CCCGC 1 cut(s) 315
FauNDI CATATG 1 cut(s) 529
FbaI TGATCA 1 cut(s) 1042
Fnu4HI GCNGC 4 cut(s) 95, 98, 320, 770
FokI GGATG 1 cut(s) 190
FriOI GRGCYC 3 cut(s) 133, 328, 1010
Fsp4HI GCNGC 4 cut(s) 95, 98, 320, 770
FspBI CTAG 4 cut(s) 89, 140, 444, 608
GluI GCNGC 4 cut(s) 95, 98, 320, 770
GsaI CCCAGC 1 cut(s) 1013
HaeIII GGCC 3 cut(s) 39, 81, 97
HgaI GACGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 6 cut(s) 38, 190, 518, 618, 748, 869
HinfI GANTC 6 cut(s) 112, 144, 506, 520, 676, 812
HphI GGTGA 5 cut(s) 107, 128, 503, 697, 821
Hpy166II GTNNAC 2 cut(s) 454, 819
Hpy188I TCNGA 3 cut(s) 505, 661, 1029
Hpy188III TCNNGA 4 cut(s) 187, 567, 665, 956
Hpy8I GTNNAC 2 cut(s) 454, 819
Hpy99I CGWCG 2 cut(s) 123, 129
HpyAV CCTTC 5 cut(s) 102, 143, 441, 534, 885
HpyCH4III ACNGT 3 cut(s) 154, 792, 1037
HpyCH4IV ACGT 2 cut(s) 237, 1101
HpyCH4V TGCA 5 cut(s) 207, 319, 375, 757, 796
HpyF3I CTNAG 4 cut(s) 504, 637, 849, 950
HpySE526I ACGT 2 cut(s) 237, 1101
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 6 cut(s) 38, 190, 518, 618, 748, 869
Ksp22I TGATCA 1 cut(s) 1042
Kzo9I GATC 6 cut(s) 160, 661, 748, 856, 1029, 1042
LguI GCTCTTC 2 cut(s) 185, 894
LmnI GCTCC 1 cut(s) 766
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 3 cut(s) 194, 362, 509
MaeI CTAG 4 cut(s) 89, 140, 444, 608
MaeII ACGT 2 cut(s) 237, 1101
MaeIII GTNAC 3 cut(s) 643, 691, 985
MalI GATC 6 cut(s) 162, 663, 750, 858, 1031, 1044
MbiI CCGCTC 1 cut(s) 769
MboI GATC 6 cut(s) 160, 661, 748, 856, 1029, 1042
MboII GAAGA 8 cut(s) 202, 245, 292, 555, 721, 743, 911, 985
MflI RGATCY 3 cut(s) 160, 748, 1029
MhlI GDGCHC 3 cut(s) 133, 328, 1010
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 5 cut(s) 215, 414, 651, 968, 1074
MluNI TGGCCA 1 cut(s) 39
MlyI GAGTC 2 cut(s) 515, 821
MmeI TCCRAC 1 cut(s) 903
Mox20I TGGCCA 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 549
MscI TGGCCA 1 cut(s) 39
MseI TTAA 2 cut(s) 242, 417
Msp20I TGGCCA 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 322
MspR9I CCNGG 2 cut(s) 303, 1112
Mva1269I GAATGC 3 cut(s) 182, 403, 870
MvaI CCWGG 2 cut(s) 303, 1112
NcoI CCATGG 2 cut(s) 34, 865
NdeI CATATG 1 cut(s) 529
NdeII GATC 6 cut(s) 160, 661, 748, 856, 1029, 1042
NlaIII CATG 6 cut(s) 38, 190, 518, 618, 748, 869
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 2 cut(s) 643, 691
NotI GCGGCCGC 1 cut(s) 95
PagI TCATGA 1 cut(s) 186
PciSI GCTCTTC 2 cut(s) 185, 894
PctI GAATGC 3 cut(s) 182, 403, 870
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 4 cut(s) 112, 144, 520, 676
PflFI GACNNNGTC 2 cut(s) 123, 713
PfoI TCCNGGA 1 cut(s) 1110
PkrI GCNGC 4 cut(s) 96, 99, 321, 771
PleI GAGTC 2 cut(s) 514, 820
PmaCI CACGTG 1 cut(s) 1102
PmlI CACGTG 1 cut(s) 1102
PpsI GAGTC 2 cut(s) 514, 820
Ppu21I YACGTR 1 cut(s) 1102
PpuMI RGGWCCY 1 cut(s) 845
Psp5II RGGWCCY 1 cut(s) 845
Psp6I CCWGG 2 cut(s) 301, 1110
PspCI CACGTG 1 cut(s) 1102
PspFI CCCAGC 1 cut(s) 1009
PspGI CCWGG 2 cut(s) 301, 1110
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 3 cut(s) 47, 721, 845
PspPPI RGGWCCY 1 cut(s) 845
PsuI RGATCY 3 cut(s) 160, 748, 1029
PsyI GACNNNGTC 2 cut(s) 123, 713
RsaI GTAC 1 cut(s) 820
RsaNI GTAC 1 cut(s) 819
SapI GCTCTTC 2 cut(s) 185, 894
SaqAI TTAA 2 cut(s) 242, 417
SatI GCNGC 4 cut(s) 95, 98, 320, 770
Sau3AI GATC 6 cut(s) 160, 661, 748, 856, 1029, 1042
Sau96I GGNCC 3 cut(s) 47, 721, 845
SchI GAGTC 2 cut(s) 515, 821
ScrFI CCNGG 2 cut(s) 303, 1112
SduI GDGCHC 3 cut(s) 133, 328, 1010
SfaNI GCATC 3 cut(s) 194, 362, 509
SinI GGWCC 3 cut(s) 47, 721, 845
SmlI CTYRAG 2 cut(s) 665, 942
SmoI CTYRAG 2 cut(s) 665, 942
Sse9I AATT 5 cut(s) 215, 414, 651, 968, 1074
SsiI CCGC 5 cut(s) 61, 94, 98, 322, 769
SspI AATATT 2 cut(s) 549, 580
SspMI CTAG 4 cut(s) 89, 140, 444, 608
StyD4I CCNGG 2 cut(s) 301, 1110
StyI CCWWGG 4 cut(s) 34, 73, 139, 865
TaaI ACNGT 3 cut(s) 154, 792, 1037
TaiI ACGT 2 cut(s) 240, 1104
TaqI TCGA 3 cut(s) 103, 127, 674
TasI AATT 5 cut(s) 215, 414, 651, 968, 1074
TauI GCSGC 3 cut(s) 97, 100, 772
TfiI GAWTC 4 cut(s) 112, 144, 520, 676
Tru1I TTAA 2 cut(s) 242, 417
Tru9I TTAA 2 cut(s) 242, 417
TscAI CASTG 3 cut(s) 157, 652, 1040
TseFI GTSAC 2 cut(s) 643, 691
TseI GCWGC 1 cut(s) 319
Tsp45I GTSAC 2 cut(s) 643, 691
TspDTI ATGAA 4 cut(s) 136, 175, 203, 721
TspGWI ACGGA 2 cut(s) 214, 926
TspRI CASTG 3 cut(s) 157, 652, 1040
Tth111I GACNNNGTC 2 cut(s) 123, 713
VpaK11BI GGWCC 3 cut(s) 47, 721, 845
XapI RAATTY 2 cut(s) 651, 1074
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XmaJI CCTAGG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 4 cut(s) 89, 140, 444, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.