Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004505

Physical Location & Seq

Genomic Coordinates Forward (+)

25655426 .. 25657525

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0264300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAAGTTTAGGGTGTTCTACCTGTTCTTCGAGTCTTGCACCAATAAGGACGCTGTTGTGACATGGCTGACTGGAGGCCCAGGTTGCAGTAGTGAATTGGCTGTGTTCTATGAAAATGGTCCTTTCACGATTTTCTGTTTGAAGGCTTCAGCTGGTAACTCAGACGGCGAGGACCGCAAGTTGACAAGAAAGGAGAAAAACGGAGGATGTAAGATCGAGTACACTACTGAAAAAGCAGCCACGCCATTGCTGGACACAATCAATTACCCAGCTCACATGAAGAATCTATCAACACAGGATCTCGAACAACTAGCAGCAGAGCTCAGAATGGATATTGTTCACAGTGTTTCACAGACAGGTGGGCATCTCAGTTTTAGCTTGGGTGTGGTGGAGCTATCAGTGGCATTGCATCATGTGTTCAGCACCCCTGACGATAAAATCATATGGGATGTTGGTCATCAGGCTTATCCTCATAAAATTCTCACAGGAAGGAGGTCCAAGATGCATACAATGAGGAAAACTTCAGGTCTTGCAGGATTTCCCAAAAGGGATGAGAGCGTTCATGATGCTTTTGGTGTCGGGCACAGTTCTACAAGCATATCTGCTGGTTTAGATATAATGCTACAGGTCAGCAGGAGAGAAAAGAAAGAAGGAATTGCTGCTGATCCAAATATTGACACTAAAATGAAGATGGGTTCACAGTTCAAGGGTAAGATACTAGAAGATAACATGGCTGGCATTCTAAAGCAATGGCACGGTGATGTGAGGAGGAAAAGGAAGAAGGAAGAACAAGAATCACAATCTGCACACGTCTTCTTCCATGGAATGGAGCTCCATGAGGCACAACATATGTATATGCAGATTTCTTTACTTCTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

32.79

Weight (kDa)

8.25

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	5 - 44	2.8e-12	Serine carboxypeptidase
DXP_synthase_N	PF13292	84 - 217	5.9e-58	1-deoxy-D-xylulose-5-phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16210
fragaria_vesca	FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990
malus_domestica	MD09G1255900.v1.1 MD17G1249200.v1.1 MD17G1249700.v1.1 MD17G1249900.v1.1
prunus_persica	Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1
pyrus_communis	pycom09g17170 pycom09g17180 pycom17g25370
rosa_chinensis	RchiOBHm_Chr3g0494111 RchiOBHm_Chr3g0494121
rosa_laevigata	RLG00000022677
rosa_multiflora	Rmu_sc0010318.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243540 Rroxscaffold_6G00391260
rosa_rugosa	Rorug03G0264300 Rorug03G0264400
rosa_samantha	Rh3AG314100 Rh3BG349900 Rh3CG346800 Rh3DG349300
rosa_wichuraiana	Rw3G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	826
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	2 cut(s)	306, 659
AcsI	RAATTY	1 cut(s)	477
AcuI	CTGAAG	2 cut(s)	132, 507
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	826
AflIII	ACRYGT	1 cut(s)	808
AgsI	TTSAA	2 cut(s)	142, 706
AjiI	CACGTC	1 cut(s)	811
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	6 cut(s)	152, 272, 322, 378, 394, 832
AluI	AGCT	6 cut(s)	152, 272, 322, 378, 394, 832
Alw21I	GWGCWC	2 cut(s)	324, 834
AlwI	GGATC	2 cut(s)	306, 659
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	3 cut(s)	236, 314, 659
ApoI	RAATTY	1 cut(s)	477
AspS9I	GGNCC	4 cut(s)	77, 119, 172, 495
AsuHPI	GGTGA	1 cut(s)	770
AvaII	GGWCC	3 cut(s)	119, 172, 495
BaeGI	GKGCMC	1 cut(s)	585
BanII	GRGCYC	2 cut(s)	324, 834
BbsI	GAAGAC	1 cut(s)	805
Bbv12I	GWGCWC	2 cut(s)	324, 834
BbvI	GCAGC	3 cut(s)	248, 326, 646
BccI	CCATC	1 cut(s)	685
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	81
BfaI	CTAG	2 cut(s)	311, 719
BfmI	CTRYAG	1 cut(s)	623
BisI	GCNGC	3 cut(s)	237, 315, 660
BlsI	GCNGC	3 cut(s)	238, 316, 661
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	3 cut(s)	119, 172, 495
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	4 cut(s)	77, 119, 172, 495
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	4 cut(s)	373, 418, 492, 556
BpiI	GAAGAC	1 cut(s)	805
BpmI	CTGGAG	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	79, 820
Bsc4I	CCNNNNNNNGG	1 cut(s)	826
Bse1I	ACTGG	1 cut(s)	76
Bse3DI	GCAATG	3 cut(s)	245, 404, 755
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	79, 820
BseGI	GGATG	3 cut(s)	212, 454, 556
BseLI	CCNNNNNNNGG	1 cut(s)	826
BseMI	GCAATG	3 cut(s)	245, 404, 755
BseMII	CTCAG	3 cut(s)	174, 337, 382
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	781
BseSI	GKGCMC	1 cut(s)	585
BseXI	GCAGC	3 cut(s)	248, 326, 646
BseYI	CCCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	789
BshFI	GGCC	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	324, 834
BslI	CCNNNNNNNGG	1 cut(s)	826
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	1 cut(s)	78
Bsp1286I	GDGCHC	3 cut(s)	324, 585, 834
Bsp143I	GATC	3 cut(s)	213, 298, 664
Bsp19I	CCATGG	1 cut(s)	820
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	3 cut(s)	173, 336, 381
BspHI	TCATGA	1 cut(s)	562
BspPI	GGATC	2 cut(s)	306, 659
BsrDI	GCAATG	3 cut(s)	245, 404, 755
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	79, 820
BssMI	GATC	3 cut(s)	213, 298, 664
BssT1I	CCWWGG	1 cut(s)	820
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	4 cut(s)	344, 587, 702, 758
BstC8I	GCNNGC	1 cut(s)	736
BstDEI	CTNAG	3 cut(s)	160, 323, 368
BstDSI	CCRYGG	1 cut(s)	820
BstF5I	GGATG	3 cut(s)	212, 454, 556
BstKTI	GATC	3 cut(s)	216, 301, 667
BstMBI	GATC	3 cut(s)	213, 298, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 174
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	623
BstSLI	GKGCMC	1 cut(s)	585
BstV1I	GCAGC	3 cut(s)	248, 326, 646
BstV2I	GAAGAC	1 cut(s)	805
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	820
BtrI	CACGTC	1 cut(s)	811
BtsCI	GGATG	3 cut(s)	212, 454, 556
BtsIMutI	CAGTG	2 cut(s)	349, 405
Cac8I	GCNNGC	1 cut(s)	736
CciI	TCATGA	1 cut(s)	562
Cfr13I	GGNCC	4 cut(s)	77, 119, 172, 495
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	7 cut(s)	63, 277, 413, 563, 730, 821, 836
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	160, 323, 368
DpnI	GATC	3 cut(s)	215, 300, 666
DpnII	GATC	3 cut(s)	213, 298, 664
Ecl136II	GAGCTC	2 cut(s)	322, 832
Eco130I	CCWWGG	1 cut(s)	820
Eco24I	GRGCYC	2 cut(s)	324, 834
Eco47I	GGWCC	3 cut(s)	119, 172, 495
Eco53kI	GAGCTC	2 cut(s)	322, 832
Eco57I	CTGAAG	2 cut(s)	132, 507
EcoICRI	GAGCTC	2 cut(s)	322, 832
EcoRII	CCWGG	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	820
EcoT22I	ATGCAT	1 cut(s)	507
EcoT38I	GRGCYC	2 cut(s)	324, 834
ErhI	CCWWGG	1 cut(s)	820
FaeI	CATG	7 cut(s)	66, 280, 416, 566, 733, 824, 839
FatI	CATG	7 cut(s)	62, 276, 412, 562, 729, 820, 835
FauNDI	CATATG	2 cut(s)	443, 849
Fnu4HI	GCNGC	3 cut(s)	237, 315, 660
FokI	GGATG	3 cut(s)	219, 461, 563
FriOI	GRGCYC	2 cut(s)	324, 834
Fsp4HI	GCNGC	3 cut(s)	237, 315, 660
FspBI	CTAG	2 cut(s)	311, 719
GluI	GCNGC	3 cut(s)	237, 315, 660
GsaI	CCCAGC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	78
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	7 cut(s)	66, 280, 416, 566, 733, 824, 839
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	3 cut(s)	32, 283, 794
HphI	GGTGA	1 cut(s)	770
Hpy166II	GTNNAC	4 cut(s)	183, 222, 340, 698
Hpy188I	TCNGA	2 cut(s)	163, 326
Hpy188III	TCNNGA	3 cut(s)	127, 302, 563
Hpy8I	GTNNAC	4 cut(s)	183, 222, 340, 698
HpyAV	CCTTC	4 cut(s)	136, 483, 644, 775
HpyCH4III	ACNGT	4 cut(s)	344, 587, 702, 758
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	7 cut(s)	39, 87, 409, 505, 533, 806, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 174
HpyF3I	CTNAG	3 cut(s)	160, 323, 368
HpySE526I	ACGT	1 cut(s)	810
Hsp92II	CATG	7 cut(s)	66, 280, 416, 566, 733, 824, 839
Kzo9I	GATC	3 cut(s)	213, 298, 664
LmnI	GCTCC	3 cut(s)	391, 829, 837
Lsp1109I	GCAGC	3 cut(s)	248, 326, 646
LweI	GCATC	4 cut(s)	373, 418, 492, 556
MaeI	CTAG	2 cut(s)	311, 719
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	2 cut(s)	58, 155
MalI	GATC	3 cut(s)	215, 300, 666
MboI	GATC	3 cut(s)	213, 298, 664
MboII	GAAGA	8 cut(s)	19, 292, 700, 734, 790, 797, 805, 808
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	3 cut(s)	324, 585, 834
MluCI	AATT	4 cut(s)	95, 262, 477, 654
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	9 cut(s)	68, 163, 197, 480, 486, 507, 759, 762, 832
Mph1103I	ATGCAT	1 cut(s)	507
MslI	CAYNNNNRTG	2 cut(s)	683, 759
MspA1I	CMGCKG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	84, 174
NcoI	CCATGG	1 cut(s)	820
NdeI	CATATG	2 cut(s)	443, 849
NdeII	GATC	3 cut(s)	213, 298, 664
NlaIII	CATG	7 cut(s)	66, 280, 416, 566, 733, 824, 839
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	507
PagI	TCATGA	1 cut(s)	562
PctI	GAATGC	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	283, 794
PflMI	CCANNNNNTGG	1 cut(s)	826
PkrI	GCNGC	3 cut(s)	238, 316, 661
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp124BI	GAGCTC	2 cut(s)	324, 834
Psp6I	CCWGG	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	79
PspPI	GGNCC	4 cut(s)	77, 119, 172, 495
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	683, 759
SacI	GAGCTC	2 cut(s)	324, 834
SatI	GCNGC	3 cut(s)	237, 315, 660
Sau3AI	GATC	3 cut(s)	213, 298, 664
Sau96I	GGNCC	4 cut(s)	77, 119, 172, 495
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	3 cut(s)	324, 585, 834
SfaNI	GCATC	4 cut(s)	373, 418, 492, 556
SfcI	CTRYAG	1 cut(s)	623
SinI	GGWCC	3 cut(s)	119, 172, 495
SmiMI	CAYNNNNRTG	2 cut(s)	683, 759
Sse9I	AATT	4 cut(s)	95, 262, 477, 654
SsiI	CCGC	1 cut(s)	175
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	2 cut(s)	311, 719
SstI	GAGCTC	2 cut(s)	324, 834
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	4 cut(s)	344, 587, 702, 758
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	3 cut(s)	30, 216, 303
TasI	AATT	4 cut(s)	95, 262, 477, 654
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	283, 794
TscAI	CASTG	2 cut(s)	349, 405
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	3 cut(s)	236, 314, 659
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	5 cut(s)	17, 126, 293, 551, 701
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	349, 405
Van91I	CCANNNNNTGG	1 cut(s)	826
VpaK11BI	GGWCC	3 cut(s)	119, 172, 495
XapI	RAATTY	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	2 cut(s)	311, 719
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.