Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004505

Physical Location & Seq

Genomic Coordinates Reverse (-)

36018882 .. 36021427

Gene Structure 2546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00243540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGATGCATGCGTCAGCCTTGCTCAGAATGTAGGAGAGATGAGAACAGAAACGGAGTTGCTTCCCCAGTGTTGGGAGCAAATAAATCATACCTATGAGGAACGCAGGTTACTAGTTGCTCAATCATGTGGAGAGCTTGCAGAAATTGTTCGGCCTGAGATCCGTGATTCTCTTATCTTATCTATTGTTCAACAACTCATAGAAGATTCTGCAACTGTTGTCCGGGAGGCTGCTGTACATAATCTTGCATTGCTGCTTCCATCTGTGCACCAGAAGGCGATTGAGATGTCCCCATTTTCCTCTGATCCTGAAACAACTGGAACAATATTTTCTACACCTTTCCTTGAATTATATGCAGGGGGACATGTTCAATTGCCTGCTTTTGAGTGGTTGCATGTCGACTGCATACCCGATTTGATAGAGCTTGCCTGCTTGCTACCTCCAAAAGAAGATACCTTGCGAAATCGAATCACCAGGTTTTTGTTGGCTATATCTGAACACTACGGGGATTCTTATTTGACACATATATTGCTCCCTATATTCCTTGTAGCCATTGAGGAAGATGCTCATTTGACATATTTCCCGTCTGAAAGCCATTCCAAAATTGAAAGTTTGATGCCAAGGACTGTTGTGGCTAAGAGACTGGCTACTATGTGCATCTTACCTCTTCTCTTGGCTGGAGTTTTGGGTGCCCCTAGCAAGCATGAACAATTAGTGGAGTATTTGAGAAAGCTATTAGTTGAAGGTGTGGGAAATCAGTCTACAAAGTGCAATGCTGAGATTATTGATGCTGTCCGCTTCCTGTGTACATTTGAAGTTCATCATGGCATGATATTATATACTCTGGGAAATGGTTGTCAGCTCCAACATAGATATGAAAATCAATACGGTCAATCTGTTGAAAGTTATTGTTCCATATACCGATGCAAAAGTTGCATCTACTCATATTTTGCCCGCCCTAGTAACTCTGGGCTCCGACCAAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

37.04

Weight (kDa)

5.45

Isoelectric Point (pI)

60.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16210
fragaria_vesca	FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990
malus_domestica	MD09G1255900.v1.1 MD17G1249200.v1.1 MD17G1249700.v1.1 MD17G1249900.v1.1
prunus_persica	Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1
pyrus_communis	pycom09g17170 pycom09g17180 pycom17g25370
rosa_chinensis	RchiOBHm_Chr3g0494111 RchiOBHm_Chr3g0494121
rosa_laevigata	RLG00000022677
rosa_multiflora	Rmu_sc0010318.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243540 Rroxscaffold_6G00391260
rosa_rugosa	Rorug03G0264300 Rorug03G0264400
rosa_samantha	Rh3AG314100 Rh3BG349900 Rh3CG346800 Rh3DG349300
rosa_wichuraiana	Rw3G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	689
AccI	GTMKAC	2 cut(s)	399, 761
AciI	CCGC	2 cut(s)	796, 955
AclWI	GGATC	2 cut(s)	154, 299
AfaI	GTAC	2 cut(s)	237, 808
AfiI	CCNNNNNNNGG	2 cut(s)	72, 73
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	7 cut(s)	191, 347, 371, 608, 743, 815, 902
AhlI	ACTAGT	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	473
AluBI	AGCT	4 cut(s)	136, 424, 733, 862
AluI	AGCT	4 cut(s)	136, 424, 733, 862
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	634
Alw44I	GTGCAC	1 cut(s)	266
AlwI	GGATC	2 cut(s)	154, 299
AoxI	GGCC	1 cut(s)	152
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	230, 253
Asp700I	GAANNNNTTC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	463
BaeGI	GKGCMC	2 cut(s)	270, 694
BanI	GGYRCC	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	975
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	217, 240
BccI	CCATC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	634
BcuI	ACTAGT	1 cut(s)	112
BfaI	CTAG	3 cut(s)	113, 696, 960
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	231, 254
BlsI	GCNGC	2 cut(s)	232, 255
Bme1390I	CCNGG	2 cut(s)	224, 475
BmiI	GGNNCC	2 cut(s)	691, 974
BmrFI	CCNGG	2 cut(s)	224, 475
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	6 cut(s)	553, 606, 666, 778, 914, 945
BmuI	ACTGGG	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 73
Bse1I	ACTGG	3 cut(s)	67, 322, 648
Bse3DI	GCAATG	2 cut(s)	248, 778
BseBI	CCWGG	1 cut(s)	475
BseDI	CCNNGG	1 cut(s)	620
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	72, 73
BseMI	GCAATG	2 cut(s)	248, 778
BseMII	CTCAG	3 cut(s)	38, 147, 768
BseNI	ACTGG	3 cut(s)	67, 322, 648
BseSI	GKGCMC	2 cut(s)	270, 694
BseXI	GCAGC	2 cut(s)	217, 240
BshFI	GGCC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	2 cut(s)	274, 375
BslI	CCNNNNNNNGG	2 cut(s)	72, 73
BsmAI	GTCTC	1 cut(s)	634
BsmFI	GGGAC	2 cut(s)	274, 375
BsnI	GGCC	1 cut(s)	154
Bsp1286I	GDGCHC	3 cut(s)	270, 694, 975
Bsp1407I	TGTACA	2 cut(s)	235, 806
Bsp143I	GATC	2 cut(s)	159, 304
BspACI	CCGC	2 cut(s)	796, 955
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	3 cut(s)	37, 148, 769
BspLI	GGNNCC	2 cut(s)	691, 974
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	154, 299
BspT107I	GGYRCC	1 cut(s)	689
BsrDI	GCAATG	2 cut(s)	248, 778
BsrGI	TGTACA	2 cut(s)	235, 806
BsrI	ACTGG	3 cut(s)	67, 322, 648
BssECI	CCNNGG	1 cut(s)	620
BssMI	GATC	2 cut(s)	159, 304
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	3 cut(s)	217, 628, 890
Bst6I	CTCTTC	1 cut(s)	672
BstAPI	GCANNNNNTGC	1 cut(s)	933
BstAUI	TGTACA	2 cut(s)	235, 806
BstC8I	GCNNGC	8 cut(s)	10, 138, 378, 426, 430, 434, 701, 955
BstDEI	CTNAG	5 cut(s)	24, 156, 636, 777, 987
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	162, 307
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	2 cut(s)	159, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	933
BstNI	CCWGG	1 cut(s)	475
BstNSI	RCATGY	3 cut(s)	12, 368, 398
BstSCI	CCNGG	2 cut(s)	222, 473
BstSLI	GKGCMC	2 cut(s)	270, 694
BstV1I	GCAGC	2 cut(s)	217, 240
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	8 cut(s)	10, 138, 378, 426, 430, 434, 701, 955
CsiI	ACCWGGT	1 cut(s)	473
Csp6I	GTAC	2 cut(s)	236, 807
CviAII	CATG	7 cut(s)	9, 126, 365, 395, 704, 824, 829
CviQI	GTAC	2 cut(s)	236, 807
DdeI	CTNAG	5 cut(s)	24, 156, 636, 777, 987
DpnI	GATC	2 cut(s)	161, 306
DpnII	GATC	2 cut(s)	159, 304
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
Eco130I	CCWWGG	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	975
EcoRII	CCWGG	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	620
EcoT22I	ATGCAT	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	975
ErhI	CCWWGG	1 cut(s)	620
FaeI	CATG	7 cut(s)	12, 129, 368, 398, 707, 827, 832
FaqI	GGGAC	2 cut(s)	274, 375
FatI	CATG	7 cut(s)	8, 125, 364, 394, 703, 823, 828
FauI	CCCGC	1 cut(s)	962
FblI	GTMKAC	2 cut(s)	399, 761
Fnu4HI	GCNGC	2 cut(s)	231, 254
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	975
Fsp4HI	GCNGC	2 cut(s)	231, 254
FspBI	CTAG	3 cut(s)	113, 696, 960
GluI	GCNGC	2 cut(s)	231, 254
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	1 cut(s)	223
Hin1II	CATG	7 cut(s)	12, 129, 368, 398, 707, 827, 832
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	4 cut(s)	167, 206, 468, 509
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	4 cut(s)	268, 400, 762, 807
Hpy188I	TCNGA	5 cut(s)	27, 304, 496, 589, 977
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	4 cut(s)	268, 400, 762, 807
HpyAV	CCTTC	2 cut(s)	268, 737
HpyCH4III	ACNGT	3 cut(s)	217, 628, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	933
HpyF3I	CTNAG	5 cut(s)	24, 156, 636, 777, 987
Hsp92II	CATG	7 cut(s)	12, 129, 368, 398, 707, 827, 832
Kzo9I	GATC	2 cut(s)	159, 304
LmnI	GCTCC	4 cut(s)	76, 537, 867, 978
Lsp1109I	GCAGC	2 cut(s)	217, 240
LweI	GCATC	6 cut(s)	553, 606, 666, 778, 914, 945
MabI	ACCWGGT	1 cut(s)	473
MaeI	CTAG	3 cut(s)	113, 696, 960
MaeIII	GTNAC	2 cut(s)	108, 962
MalI	GATC	2 cut(s)	161, 306
MboI	GATC	2 cut(s)	159, 304
MboII	GAAGA	4 cut(s)	215, 461, 572, 659
MfeI	CAATTG	1 cut(s)	371
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	3 cut(s)	270, 694, 975
MluCI	AATT	5 cut(s)	144, 347, 371, 603, 710
MmeI	TCCRAC	1 cut(s)	889
MnlI	CCTC	6 cut(s)	91, 220, 310, 450, 550, 675
Mph1103I	ATGCAT	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	147
MslI	CAYNNNNRTG	2 cut(s)	93, 873
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	224, 475
MunI	CAATTG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	1 cut(s)	933
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	2 cut(s)	159, 304
NlaIII	CATG	7 cut(s)	12, 129, 368, 398, 707, 827, 832
NlaIV	GGNNCC	2 cut(s)	691, 974
NsiI	ATGCAT	1 cut(s)	10
NspI	RCATGY	3 cut(s)	12, 368, 398
PaeI	GCATGC	1 cut(s)	12
PciI	ACATGT	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	4 cut(s)	167, 206, 468, 509
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	232, 255
PscI	ACATGT	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	473
PspN4I	GGNNCC	2 cut(s)	691, 974
PsrI	GAACNNNNNNTAC	2 cut(s)	93, 125
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	2 cut(s)	237, 808
RsaNI	GTAC	2 cut(s)	236, 807
RseI	CAYNNNNRTG	2 cut(s)	93, 873
SalI	GTCGAC	1 cut(s)	398
SatI	GCNGC	2 cut(s)	231, 254
Sau3AI	GATC	2 cut(s)	159, 304
ScrFI	CCNGG	2 cut(s)	224, 475
SduI	GDGCHC	3 cut(s)	270, 694, 975
SexAI	ACCWGGT	1 cut(s)	473
SfaNI	GCATC	6 cut(s)	553, 606, 666, 778, 914, 945
SmiMI	CAYNNNNRTG	2 cut(s)	93, 873
SpeI	ACTAGT	1 cut(s)	112
SphI	GCATGC	1 cut(s)	12
Sse9I	AATT	5 cut(s)	144, 347, 371, 603, 710
SsiI	CCGC	2 cut(s)	796, 955
SspI	AATATT	1 cut(s)	327
SspMI	CTAG	3 cut(s)	113, 696, 960
StyD4I	CCNGG	2 cut(s)	222, 473
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	3 cut(s)	217, 628, 890
TaqI	TCGA	2 cut(s)	399, 466
TasI	AATT	5 cut(s)	144, 347, 371, 603, 710
TatI	WGTACW	2 cut(s)	235, 806
TfiI	GAWTC	4 cut(s)	167, 206, 468, 509
TscAI	CASTG	1 cut(s)	74
TseI	GCWGC	2 cut(s)	230, 253
TspDTI	ATGAA	3 cut(s)	720, 809, 891
TspGWI	ACGGA	2 cut(s)	68, 152
TspRI	CASTG	1 cut(s)	74
VneI	GTGCAC	1 cut(s)	266
XceI	RCATGY	3 cut(s)	12, 368, 398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XmiI	GTMKAC	2 cut(s)	399, 761
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	3 cut(s)	113, 696, 960
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.