Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004505

Physical Location & Seq

Genomic Coordinates Forward (+)

41817398 .. 41819303

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45672

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGTTCCAATTGGTCTGTGATCCCTCTGGAGTGGTGGTGGAATCTACACTCAAAGAATTAGTCCCTGCAGTAATCAAGTGGGGACACAAATTAGACCATGTTTTAAGAGTTCTACTATCTCATATATTGAGCTCCGCTGAGCGCTGCCCTCCACTTTCGGGGGTTGAAGGGTCTGTGGAGTCGCATCTTCGTGTGTTAGGAGAACGAGAACGCTGGAATGTCGATGTTTTATTACGGATGCTACTGGAAATGCTTCCATCTGTGCACCAGAAGGCGATTGAGATGTCCCCATTTTCTTCTGATCCTGAAACAACTGGAACAATATTTTCTACACCTTTCCTTGAATTATATGCAGGGGGACATGTTCAATTGCCTGCTTTTGAGTGGTTGCATGTCGACTGCATACCCGATTTGATAGAGCTTGCCTGCTTGCTACCTCCAAAAGAAGATACTTTGCGAAATCGAATCACCAGGTTTTTGTTGGCTGTATCTGAACACTACGGGGATTCTTATTTGACACATATATTGCTCCCTATATTCCTTATAGCCATTGGGGAAGATGCTCTTTTGACATATTTCCCGTCTGAAAGCCATTCCAAAATTGAAGGTTTGATGCCAAGGACTGCTGTGGCTAAGAGACTGGCTACTATGTGCATCTTACCTCTTCTCTTGGCTGGAGTTTTGGGTGCCCCTAGCAAGCATGAACAATTAGTGGAGTATTTGAGAAAGCTATTAGTTGAAGGTGTGGGAAATCAGTCTACAAAGTGCAATGCTGAGATTATTGATGCTGTCCGCTTCCTGTGCACATGTGAAGTTCATCATGGCATGATATTTAATATACTCTGGGAAATGGTTGTCAGCTCCAACATAGATATGAAAATCAATGCGGCCAATCTGTTGAAAGTTATTGTTCCATATATCGATGCAAAAGTTGCATCTACTCATATTTTGCCCGCCCTAGTAACTCTGGGCTCTGACCAAAACCTTAGTGTGAAGTATGCAAGCATAGTTTCCTTTGGAGCTGTCGCCCAACATTTTAAAAATGATATGATTGTCGATAAGATACGGGTTCAGATGGATGCTTTTCTTGAAGATGGATCCCATGAAGCTACCATTGCTGTGGTTCATGCATTGGTAGTTGCTGTACCTCATACAACGGATAGACTTAAAGATTATATCCTCAACATATTTCCTGGAGGAATTGTTTTATTTCCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

406

Amino Acids

44.96

Weight (kDa)

5.74

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16210
fragaria_vesca	FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990
malus_domestica	MD09G1255900.v1.1 MD17G1249200.v1.1 MD17G1249700.v1.1 MD17G1249900.v1.1
prunus_persica	Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1
pyrus_communis	pycom09g17170 pycom09g17180 pycom17g25370
rosa_chinensis	RchiOBHm_Chr3g0494111 RchiOBHm_Chr3g0494121
rosa_laevigata	RLG00000022677
rosa_multiflora	Rmu_sc0010318.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243540 Rroxscaffold_6G00391260
rosa_rugosa	Rorug03G0264300 Rorug03G0264400
rosa_samantha	Rh3AG314100 Rh3BG349900 Rh3CG346800 Rh3DG349300
rosa_wichuraiana	Rw3G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	686
AccI	GTMKAC	2 cut(s)	396, 758
AciI	CCGC	4 cut(s)	135, 793, 887, 954
AclWI	GGATC	4 cut(s)	14, 296, 1092, 1105
AcoI	YGGCCR	1 cut(s)	888
AfaI	GTAC	1 cut(s)	1146
AfeI	AGCGCT	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflIII	ACRYGT	2 cut(s)	361, 806
AgsI	TTSAA	7 cut(s)	167, 344, 368, 605, 740, 901, 1091
AjnI	CCWGG	2 cut(s)	470, 1192
AluBI	AGCT	6 cut(s)	132, 421, 730, 861, 1022, 1109
AluI	AGCT	6 cut(s)	132, 421, 730, 861, 1022, 1109
Alw21I	GWGCWC	3 cut(s)	134, 267, 806
Alw26I	GTCTC	1 cut(s)	631
Alw44I	GTGCAC	2 cut(s)	263, 802
AlwI	GGATC	4 cut(s)	14, 296, 1092, 1105
Aor51HI	AGCGCT	1 cut(s)	143
AoxI	GGCC	1 cut(s)	888
ApaLI	GTGCAC	2 cut(s)	263, 802
ApeKI	GCWGC	1 cut(s)	144
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	460
BaeGI	GKGCMC	3 cut(s)	267, 691, 806
BamHI	GGATCC	1 cut(s)	1097
BanI	GGYRCC	1 cut(s)	686
BanII	GRGCYC	2 cut(s)	134, 974
Bbv12I	GWGCWC	3 cut(s)	134, 267, 806
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	3 cut(s)	265, 1069, 1088
BciT130I	CCWGG	2 cut(s)	472, 1194
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	2 cut(s)	693, 959
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	145
BisI	GCNGC	2 cut(s)	145, 888
BlpI	GCTNAGC	1 cut(s)	138
BlsI	GCNGC	2 cut(s)	146, 889
Bme1390I	CCNGG	2 cut(s)	472, 1194
BmiI	GGNNCC	2 cut(s)	688, 1099
BmrFI	CCNGG	2 cut(s)	472, 1194
BmsI	GCATC	9 cut(s)	193, 228, 550, 603, 663, 775, 913, 944, 1069
BpmI	CTGGAG	3 cut(s)	48, 696, 1215
Bpu1102I	GCTNAGC	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	921
BsaJI	CCNNGG	1 cut(s)	617
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 1188, 1218
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	3 cut(s)	249, 319, 645
Bse3DI	GCAATG	2 cut(s)	775, 1113
BseBI	CCWGG	2 cut(s)	472, 1194
BseCI	ATCGAT	1 cut(s)	921
BseDI	CCNNGG	1 cut(s)	617
BseGI	GGATG	2 cut(s)	243, 1084
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	2 cut(s)	775, 1113
BseMII	CTCAG	2 cut(s)	129, 765
BseNI	ACTGG	3 cut(s)	249, 319, 645
BseSI	GKGCMC	3 cut(s)	267, 691, 806
BseXI	GCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	890
BshNI	GGYRCC	1 cut(s)	686
BshVI	ATCGAT	1 cut(s)	921
BsiHKAI	GWGCWC	3 cut(s)	134, 267, 806
BslFI	GGGAC	4 cut(s)	47, 96, 271, 372
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	631
BsmFI	GGGAC	4 cut(s)	47, 96, 271, 372
BsnI	GGCC	1 cut(s)	890
Bsp1286I	GDGCHC	5 cut(s)	134, 267, 691, 806, 974
Bsp143I	GATC	3 cut(s)	19, 301, 1097
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	4 cut(s)	135, 793, 887, 954
BspANI	GGCC	1 cut(s)	890
BspCNI	CTCAG	2 cut(s)	130, 766
BspDI	ATCGAT	1 cut(s)	921
BspLI	GGNNCC	2 cut(s)	688, 1099
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	4 cut(s)	14, 296, 1092, 1105
BspT107I	GGYRCC	1 cut(s)	686
BsrDI	GCAATG	2 cut(s)	775, 1113
BsrI	ACTGG	3 cut(s)	249, 319, 645
BssECI	CCNNGG	1 cut(s)	617
BssMI	GATC	3 cut(s)	19, 301, 1097
BssT1I	CCWWGG	1 cut(s)	617
Bst2UI	CCWGG	2 cut(s)	472, 1194
Bst6I	CTCTTC	1 cut(s)	669
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstC8I	GCNNGC	7 cut(s)	375, 423, 427, 431, 698, 954, 1003
BstDEI	CTNAG	4 cut(s)	138, 633, 774, 986
BstF5I	GGATG	2 cut(s)	243, 1084
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	3 cut(s)	22, 304, 1100
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	3 cut(s)	19, 301, 1097
BstMWI	GCNNNNNNNGC	3 cut(s)	801, 932, 1115
BstNI	CCWGG	2 cut(s)	472, 1194
BstNSI	RCATGY	3 cut(s)	365, 395, 810
BstSCI	CCNGG	2 cut(s)	470, 1192
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	3 cut(s)	267, 691, 806
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	1097
BstXI	CCANNNNNNTGG	1 cut(s)	1120
BstYI	RGATCY	1 cut(s)	1097
Bsu15I	ATCGAT	1 cut(s)	921
BsuRI	GGCC	1 cut(s)	890
BsuTUI	ATCGAT	1 cut(s)	921
BtsCI	GGATG	2 cut(s)	243, 1084
Cac8I	GCNNGC	7 cut(s)	375, 423, 427, 431, 698, 954, 1003
CfoI	GCGC	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	921
CsiI	ACCWGGT	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	1145
CviAII	CATG	9 cut(s)	98, 362, 392, 701, 807, 821, 826, 1103, 1127
CviQI	GTAC	1 cut(s)	1145
DdeI	CTNAG	4 cut(s)	138, 633, 774, 986
DpnI	GATC	3 cut(s)	21, 303, 1099
DpnII	GATC	3 cut(s)	19, 301, 1097
DraI	TTTAAA	1 cut(s)	1039
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
Ecl136II	GAGCTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	617
Eco24I	GRGCYC	2 cut(s)	134, 974
Eco47III	AGCGCT	1 cut(s)	143
Eco53kI	GAGCTC	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	470, 1192
EcoT14I	CCWWGG	1 cut(s)	617
EcoT22I	ATGCAT	1 cut(s)	1132
EcoT38I	GRGCYC	2 cut(s)	134, 974
ErhI	CCWWGG	1 cut(s)	617
FaeI	CATG	9 cut(s)	101, 365, 395, 704, 810, 824, 829, 1106, 1130
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	4 cut(s)	47, 96, 271, 372
FatI	CATG	9 cut(s)	97, 361, 391, 700, 806, 820, 825, 1102, 1126
FauI	CCCGC	1 cut(s)	961
FblI	GTMKAC	2 cut(s)	396, 758
Fnu4HI	GCNGC	2 cut(s)	145, 888
FokI	GGATG	2 cut(s)	250, 1091
FriOI	GRGCYC	2 cut(s)	134, 974
Fsp4HI	GCNGC	2 cut(s)	145, 888
FspBI	CTAG	2 cut(s)	693, 959
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	2 cut(s)	145, 888
GsuI	CTGGAG	3 cut(s)	48, 696, 1215
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	1 cut(s)	890
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	9 cut(s)	101, 365, 395, 704, 810, 824, 829, 1106, 1130
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	4 cut(s)	41, 179, 465, 506
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	4 cut(s)	265, 397, 759, 804
Hpy188I	TCNGA	5 cut(s)	301, 493, 586, 976, 1074
Hpy188III	TCNNGA	3 cut(s)	27, 305, 1088
Hpy8I	GTNNAC	4 cut(s)	265, 397, 759, 804
HpyAV	CCTTC	4 cut(s)	161, 265, 599, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	801, 932, 1115
HpyF3I	CTNAG	4 cut(s)	138, 633, 774, 986
Hsp92II	CATG	9 cut(s)	101, 365, 395, 704, 810, 824, 829, 1106, 1130
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	19, 301, 1097
LmnI	GCTCC	4 cut(s)	137, 534, 866, 1019
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	9 cut(s)	193, 228, 550, 603, 663, 775, 913, 944, 1069
MabI	ACCWGGT	1 cut(s)	470
MaeI	CTAG	2 cut(s)	693, 959
MaeIII	GTNAC	1 cut(s)	961
MalI	GATC	3 cut(s)	21, 303, 1099
MboI	GATC	3 cut(s)	19, 301, 1097
MboII	GAAGA	6 cut(s)	179, 288, 458, 569, 656, 1103
MfeI	CAATTG	2 cut(s)	8, 368
MflI	RGATCY	1 cut(s)	1097
MhlI	GDGCHC	5 cut(s)	134, 267, 691, 806, 974
MluCI	AATT	8 cut(s)	8, 56, 89, 344, 368, 600, 707, 1200
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	888
MnlI	CCTC	7 cut(s)	34, 159, 447, 672, 1158, 1190, 1190
Mph1103I	ATGCAT	1 cut(s)	1132
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	4 cut(s)	104, 834, 1038, 1167
MslI	CAYNNNNRTG	3 cut(s)	189, 872, 1118
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	472, 1194
MunI	CAATTG	2 cut(s)	8, 368
MvaI	CCWGG	2 cut(s)	472, 1194
MwoI	GCNNNNNNNGC	3 cut(s)	801, 932, 1115
NdeII	GATC	3 cut(s)	19, 301, 1097
NlaIII	CATG	9 cut(s)	101, 365, 395, 704, 810, 824, 829, 1106, 1130
NlaIV	GGNNCC	2 cut(s)	688, 1099
NsiI	ATGCAT	1 cut(s)	1132
NspI	RCATGY	3 cut(s)	365, 395, 810
PciI	ACATGT	2 cut(s)	361, 806
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	41, 465, 506
PfoI	TCCNGGA	1 cut(s)	1192
PkrI	GCNGC	2 cut(s)	146, 889
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PscI	ACATGT	2 cut(s)	361, 806
Psp124BI	GAGCTC	1 cut(s)	134
Psp6I	CCWGG	2 cut(s)	470, 1192
PspGI	CCWGG	2 cut(s)	470, 1192
PspN4I	GGNNCC	2 cut(s)	688, 1099
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	1097
RsaI	GTAC	1 cut(s)	1146
RsaNI	GTAC	1 cut(s)	1145
RseI	CAYNNNNRTG	3 cut(s)	189, 872, 1118
SacI	GAGCTC	1 cut(s)	134
SalI	GTCGAC	1 cut(s)	395
SaqAI	TTAA	4 cut(s)	104, 834, 1038, 1167
SatI	GCNGC	2 cut(s)	145, 888
Sau3AI	GATC	3 cut(s)	19, 301, 1097
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	472, 1194
SduI	GDGCHC	5 cut(s)	134, 267, 691, 806, 974
SexAI	ACCWGGT	1 cut(s)	470
SfaNI	GCATC	9 cut(s)	193, 228, 550, 603, 663, 775, 913, 944, 1069
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	3 cut(s)	189, 872, 1118
Sse9I	AATT	8 cut(s)	8, 56, 89, 344, 368, 600, 707, 1200
SsiI	CCGC	4 cut(s)	135, 793, 887, 954
SspI	AATATT	1 cut(s)	324
SspMI	CTAG	2 cut(s)	693, 959
SstI	GAGCTC	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	470, 1192
StyI	CCWWGG	1 cut(s)	617
TaqI	TCGA	5 cut(s)	222, 396, 463, 921, 1056
TasI	AATT	8 cut(s)	8, 56, 89, 344, 368, 600, 707, 1200
TauI	GCSGC	1 cut(s)	890
TfiI	GAWTC	3 cut(s)	41, 465, 506
Tru1I	TTAA	4 cut(s)	104, 834, 1038, 1167
Tru9I	TTAA	4 cut(s)	104, 834, 1038, 1167
TseI	GCWGC	1 cut(s)	144
TspDTI	ATGAA	5 cut(s)	717, 806, 890, 1115, 1119
TspGWI	ACGGA	2 cut(s)	250, 1172
VneI	GTGCAC	2 cut(s)	263, 802
XceI	RCATGY	3 cut(s)	365, 395, 810
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XmiI	GTMKAC	2 cut(s)	396, 758
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	693, 959
Zsp2I	ATGCAT	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.