Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004505

Physical Location & Seq

Genomic Coordinates Reverse (-)

17584211 .. 17586354

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17170.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGACTAAGCGCTGTCCTCCTCTTTCGGGCGTTGAAGGTTCTGTGGAGTCACATCTTCGTGTTTTAGGTGAACGAGAACGCTGGAATGTTGATGTTTTACTACGAATGCTTGTGGAAATTCTTCCTTACGTGCACCAGAAAGCAATTCAGATGTGCCCAGTTTCTTCTGATCCTGAAACAACTGGAACAATATTTTCCAAATCTTTCCTTGAATTGTATGCAGGTGGACATGTTCAATTGCCTGCATTTGAGTGGCTGCATGTTGACTGCTTTCCTGCTTTAATACAACTCGCATGCTTGTTACCTCCAAAAGAGGATAATTTGCGAAACCAAATTACCAAGTTTCTATTGGCTGTATCAGAACTCTATGGGGATTCTTATTTGACACACATAATGCTGCCTGTATTCTTGGTAGCCATTGGGGAAGATGCTGAATTGACATTTTTTCCATCTGCAACCCATTCCGGAATCAAAGGTTTGAGGCCAAGAACGGCTGTGACTAGGAGATTGGCTACTATGTGTGTCCTACCTCTTCTCTTGGCTGGTGTTTTGGGTGGTCCAAGCAAGCATGAACAATTACTGGAGTACCTGAGAAAGCTATTAGTTGAAGGTGTTGCAAATCAATCTACGAAGTGCAATGCTGAGATTGTTGATGCTGTTCGCTTCCTTTGGTTAGTAAAGGCTTTTCATAATGCAGCACATTTGAAGATCGATCACCGTATGATATTTAATTTACTCTGGGAAATGGTTGTCAGCTCCAACATAGATATGAAAATAAATGCTGCCAATCTGTTGAAAGTCATTGTGAGTTTTGCCATTCTTGGAGTCCTATGTTCTTTATGTGTTCCATATATTGATGCAAAAGTTGCATCAACTCATATATTGCCTGCCCTAGTTACTCTGGGCTCTGACCAAAACCTGAGTGTGAAGTATGCAAGCATAGATGCCTTTGGAGCAGTGGCCCAACATTTTAAAAATGACATGATTTTTCAACTGACAGCCACTCCACCTTCAAGTGACTTGATGCGGCGGCGTGAGAGAGCCAATGCATTTTGTGAAGCAATCCGTGCTCTGGATGCAACAGGTTTTCTTTTTTTTTTAGGACCCAAATGTTCTATTTATAGTTATTTTATTAATTTTTCTTCAGTTTATGTGCCCTTACACATCTTGAGCAACATTATCATTTGCTTCCTTCATATAATGTTGAACATGACACTTGTGTCCACTTCTTTGGAACATGTTAAAGAAATTTGGTTTGTTTATGCAAATTATTTTCAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

428

Amino Acids

47.8

Weight (kDa)

7.22

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16210
fragaria_vesca	FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990 FvH4_7g07990
malus_domestica	MD09G1255900.v1.1 MD17G1249200.v1.1 MD17G1249700.v1.1 MD17G1249900.v1.1
prunus_persica	Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1 Prupe.3G148000_v2.0.a1
pyrus_communis	pycom09g17170 pycom09g17180 pycom17g25370
rosa_chinensis	RchiOBHm_Chr3g0494111 RchiOBHm_Chr3g0494121
rosa_laevigata	RLG00000022677
rosa_multiflora	Rmu_sc0010318.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243540 Rroxscaffold_6G00391260
rosa_rugosa	Rorug03G0264300 Rorug03G0264400
rosa_samantha	Rh3AG314100 Rh3BG349900 Rh3CG346800 Rh3DG349300
rosa_wichuraiana	Rw3G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	212
AasI	GACNNNNNNGTC	1 cut(s)	1219
Acc36I	ACCTGC	1 cut(s)	212
AccIII	TCCGGA	1 cut(s)	464
AciI	CCGC	2 cut(s)	1027, 1030
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	117, 1248
AcuI	CTGAAG	1 cut(s)	1128
AfaI	GTAC	1 cut(s)	587
AfeI	AGCGCT	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	26, 1072
AflIII	ACRYGT	2 cut(s)	229, 1237
AgsI	TTSAA	9 cut(s)	35, 212, 236, 608, 706, 796, 992, 1014, 1207
AluBI	AGCT	2 cut(s)	598, 756
AluI	AGCT	2 cut(s)	598, 756
Alw21I	GWGCWC	2 cut(s)	135, 1072
Alw44I	GTGCAC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	164
Aor13HI	TCCGGA	1 cut(s)	464
Aor51HI	AGCGCT	1 cut(s)	11
AoxI	GGCC	2 cut(s)	482, 960
ApaLI	GTGCAC	1 cut(s)	131
ApeKI	GCWGC	4 cut(s)	256, 397, 695, 782
ApoI	RAATTY	2 cut(s)	117, 1248
AseI	ATTAAT	1 cut(s)	1134
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	3 cut(s)	557, 961, 1103
AsuHPI	GGTGA	2 cut(s)	80, 707
AvaII	GGWCC	2 cut(s)	557, 1103
BaeGI	GKGCMC	3 cut(s)	135, 158, 1158
BaeI	ACNNNNGTAYC	2 cut(s)	569, 602
BanII	GRGCYC	1 cut(s)	908
Bbv12I	GWGCWC	2 cut(s)	135, 1072
BbvI	GCAGC	4 cut(s)	243, 384, 707, 769
BccI	CCATC	1 cut(s)	457
BceAI	ACGGC	1 cut(s)	507
BfaI	CTAG	2 cut(s)	501, 893
BfoI	RGCGCY	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	6 cut(s)	257, 398, 696, 783, 1028, 1031
BlsI	GCNGC	6 cut(s)	258, 399, 697, 784, 1029, 1032
Bme18I	GGWCC	2 cut(s)	557, 1103
BmgT120I	GGNCC	3 cut(s)	557, 961, 1103
BmiI	GGNNCC	1 cut(s)	1105
BmrI	ACTGGG	1 cut(s)	152
BmsI	GCATC	7 cut(s)	418, 643, 847, 878, 934, 1014, 1066
BmuI	ACTGGG	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	1189
Bsa29I	ATCGAT	1 cut(s)	711
BsaAI	YACGTR	1 cut(s)	130
BsaWI	WCCGGW	1 cut(s)	464
BsaXI	ACNNNNNCTCC	2 cut(s)	988, 1018
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 1072
Bse1I	ACTGG	3 cut(s)	158, 187, 585
Bse3DI	GCAATG	1 cut(s)	643
BseAI	TCCGGA	1 cut(s)	464
BseCI	ATCGAT	1 cut(s)	711
BseGI	GGATG	1 cut(s)	1081
BseLI	CCNNNNNNNGG	2 cut(s)	26, 1072
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	3 cut(s)	581, 633, 911
BseNI	ACTGG	3 cut(s)	158, 187, 585
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	3 cut(s)	135, 158, 1158
BseXI	GCAGC	4 cut(s)	243, 384, 707, 769
BshFI	GGCC	2 cut(s)	484, 962
BshVI	ATCGAT	1 cut(s)	711
BsiHKAI	GWGCWC	2 cut(s)	135, 1072
BsiSI	CCGG	1 cut(s)	465
BslI	CCNNNNNNNGG	2 cut(s)	26, 1072
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	2 cut(s)	484, 962
Bsp1286I	GDGCHC	5 cut(s)	135, 158, 908, 1072, 1158
Bsp13I	TCCGGA	1 cut(s)	464
Bsp143I	GATC	3 cut(s)	169, 708, 712
BspACI	CCGC	2 cut(s)	1027, 1030
BspANI	GGCC	2 cut(s)	484, 962
BspCNI	CTCAG	3 cut(s)	582, 634, 912
BspDI	ATCGAT	1 cut(s)	711
BspEI	TCCGGA	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	1105
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	643
BsrI	ACTGG	3 cut(s)	158, 187, 585
BssMI	GATC	3 cut(s)	169, 708, 712
Bst4CI	ACNGT	1 cut(s)	719
Bst6I	CTCTTC	1 cut(s)	537
BstAPI	GCANNNNNTGC	2 cut(s)	866, 1067
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	5 cut(s)	243, 295, 566, 888, 937
BstDEI	CTNAG	4 cut(s)	6, 590, 642, 920
BstF5I	GGATG	1 cut(s)	1081
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	3 cut(s)	172, 711, 715
BstMBI	GATC	3 cut(s)	169, 708, 712
BstMWI	GCNNNNNNNGC	4 cut(s)	866, 953, 1067, 1076
BstNSI	RCATGY	4 cut(s)	233, 263, 297, 1241
BstSLI	GKGCMC	3 cut(s)	135, 158, 1158
BstV1I	GCAGC	4 cut(s)	243, 384, 707, 769
BstXI	CCANNNNNNTGG	1 cut(s)	1231
Bsu15I	ATCGAT	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	484, 962
BsuTUI	ATCGAT	1 cut(s)	711
BtsCI	GGATG	1 cut(s)	1081
BtsI	GCAGTG	1 cut(s)	963
BtsIMutI	CAGTG	1 cut(s)	963
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	5 cut(s)	243, 295, 566, 888, 937
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	3 cut(s)	557, 961, 1103
ClaI	ATCGAT	1 cut(s)	711
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	7 cut(s)	230, 260, 294, 569, 982, 1210, 1238
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	4 cut(s)	6, 590, 642, 920
DpnI	GATC	3 cut(s)	171, 710, 714
DpnII	GATC	3 cut(s)	169, 708, 712
DraI	TTTAAA	1 cut(s)	973
DrdI	GACNNNNNNGTC	1 cut(s)	1219
DseDI	GACNNNNNNGTC	1 cut(s)	1219
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	908
Eco47I	GGWCC	2 cut(s)	557, 1103
Eco47III	AGCGCT	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	1128
EcoO109I	RGGNCCY	1 cut(s)	1103
EcoT22I	ATGCAT	1 cut(s)	1051
EcoT38I	GRGCYC	1 cut(s)	908
FaeI	CATG	7 cut(s)	233, 263, 297, 572, 985, 1213, 1241
FatI	CATG	7 cut(s)	229, 259, 293, 568, 981, 1209, 1237
Fnu4HI	GCNGC	6 cut(s)	257, 398, 696, 783, 1028, 1031
FokI	GGATG	1 cut(s)	1088
FriOI	GRGCYC	1 cut(s)	908
Fsp4HI	GCNGC	6 cut(s)	257, 398, 696, 783, 1028, 1031
FspBI	CTAG	2 cut(s)	501, 893
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	6 cut(s)	257, 398, 696, 783, 1028, 1031
GsuI	CTGGAG	1 cut(s)	602
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	2 cut(s)	484, 962
HapII	CCGG	1 cut(s)	465
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	7 cut(s)	233, 263, 297, 572, 985, 1213, 1241
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	4 cut(s)	47, 374, 468, 825
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	2 cut(s)	80, 707
Hpy166II	GTNNAC	5 cut(s)	71, 133, 227, 265, 1224
Hpy188I	TCNGA	5 cut(s)	150, 169, 361, 910, 1278
Hpy188III	TCNNGA	4 cut(s)	173, 465, 1073, 1168
Hpy8I	GTNNAC	5 cut(s)	71, 133, 227, 265, 1224
HpyAV	CCTTC	4 cut(s)	29, 602, 1020, 1202
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	4 cut(s)	866, 953, 1067, 1076
HpyF3I	CTNAG	4 cut(s)	6, 590, 642, 920
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	7 cut(s)	233, 263, 297, 572, 985, 1213, 1241
HspAI	GCGC	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	464
Kzo9I	GATC	3 cut(s)	169, 708, 712
LmnI	GCTCC	2 cut(s)	761, 953
Lsp1109I	GCAGC	4 cut(s)	243, 384, 707, 769
LweI	GCATC	7 cut(s)	418, 643, 847, 878, 934, 1014, 1066
MaeI	CTAG	2 cut(s)	501, 893
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	5 cut(s)	48, 300, 496, 895, 1016
MalI	GATC	3 cut(s)	171, 710, 714
MboI	GATC	3 cut(s)	169, 708, 712
MboII	GAAGA	7 cut(s)	47, 113, 156, 437, 524, 718, 1134
MfeI	CAATTG	1 cut(s)	236
MhlI	GDGCHC	5 cut(s)	135, 158, 908, 1072, 1158
MlyI	GAGTC	2 cut(s)	56, 834
MmeI	TCCRAC	1 cut(s)	783
MnlI	CCTC	6 cut(s)	27, 30, 307, 315, 474, 540
Mph1103I	ATGCAT	1 cut(s)	1051
MroI	TCCGGA	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	6 cut(s)	281, 729, 972, 1134, 1242, 1282
MslI	CAYNNNNRTG	3 cut(s)	57, 250, 767
MspI	CCGG	1 cut(s)	465
MunI	CAATTG	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	111
MwoI	GCNNNNNNNGC	4 cut(s)	866, 953, 1067, 1076
NdeII	GATC	3 cut(s)	169, 708, 712
NlaIII	CATG	7 cut(s)	233, 263, 297, 572, 985, 1213, 1241
NlaIV	GGNNCC	1 cut(s)	1105
NmuCI	GTSAC	3 cut(s)	48, 496, 1016
NsiI	ATGCAT	1 cut(s)	1051
NspI	RCATGY	4 cut(s)	233, 263, 297, 1241
PaeI	GCATGC	1 cut(s)	297
PaqCI	CACCTGC	1 cut(s)	212
PciI	ACATGT	2 cut(s)	229, 1237
PctI	GAATGC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	374, 468
PkrI	GCNGC	6 cut(s)	258, 399, 697, 784, 1029, 1032
PleI	GAGTC	2 cut(s)	55, 833
PpsI	GAGTC	2 cut(s)	55, 833
Ppu21I	YACGTR	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	1103
PscI	ACATGT	2 cut(s)	229, 1237
PshBI	ATTAAT	1 cut(s)	1134
Psp5II	RGGWCCY	1 cut(s)	1103
PspN4I	GGNNCC	1 cut(s)	1105
PspPI	GGNCC	3 cut(s)	557, 961, 1103
PspPPI	RGGWCCY	1 cut(s)	1103
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
RseI	CAYNNNNRTG	3 cut(s)	57, 250, 767
SaqAI	TTAA	6 cut(s)	281, 729, 972, 1134, 1242, 1282
SatI	GCNGC	6 cut(s)	257, 398, 696, 783, 1028, 1031
Sau3AI	GATC	3 cut(s)	169, 708, 712
Sau96I	GGNCC	3 cut(s)	557, 961, 1103
SchI	GAGTC	2 cut(s)	56, 834
SduI	GDGCHC	5 cut(s)	135, 158, 908, 1072, 1158
SfaNI	GCATC	7 cut(s)	418, 643, 847, 878, 934, 1014, 1066
SinI	GGWCC	2 cut(s)	557, 1103
SmiMI	CAYNNNNRTG	3 cut(s)	57, 250, 767
SmlI	CTYRAG	1 cut(s)	1168
SmoI	CTYRAG	1 cut(s)	1168
SphI	GCATGC	1 cut(s)	297
SsiI	CCGC	2 cut(s)	1027, 1030
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	2 cut(s)	501, 893
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	711
TauI	GCSGC	2 cut(s)	1030, 1033
TfiI	GAWTC	2 cut(s)	374, 468
Tru1I	TTAA	6 cut(s)	281, 729, 972, 1134, 1242, 1282
Tru9I	TTAA	6 cut(s)	281, 729, 972, 1134, 1242, 1282
TscAI	CASTG	1 cut(s)	963
TseFI	GTSAC	3 cut(s)	48, 496, 1016
TseI	GCWGC	4 cut(s)	256, 397, 695, 782
Tsp45I	GTSAC	3 cut(s)	48, 496, 1016
TspDTI	ATGAA	4 cut(s)	585, 677, 785, 1184
TspGWI	ACGGA	1 cut(s)	1055
TspRI	CASTG	1 cut(s)	963
VneI	GTGCAC	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	557, 1103
VspI	ATTAAT	1 cut(s)	1134
XapI	RAATTY	2 cut(s)	117, 1248
XceI	RCATGY	4 cut(s)	233, 263, 297, 1241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	2 cut(s)	501, 893
Zsp2I	ATGCAT	1 cut(s)	1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.