pycom09g17180

LisH domain and HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0004505
Physical Location & Seq
Reverse (-)
17586696 .. 17587353
658 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17180.3

Sequence Viewer

Length: 525 bp
ATGTATTCACAGGAGCTTCTTCCCCTAATCATGTGTGCGATTGAACGCCATCCAGATAGCAGCACTCGGGATTCCTTAACCCACACATTGTTTAATCTAATCAAACGCCCAGATGAGCAGCAGAGAAGAATTATAATGGATGTGAGTGTTTTGGACTTGTTCCTGAATATTTTAACTGCATTTCAGGCATGTGTTACCCTTGCTAAGGATGTAGGAGAGATGAGAACAGAAACAGAATTGCTTCCCCAGTGTTGGGAACAAATAAATCATATGTATGAGGAACGCAGGCTGCTAGTTGCTCAATCATGTGGAGAGCTTGCAGAATTTGTCCGTCCTGAGATTCGTGATTCTCTTATATTGTCCATTGTTCAACAACTCATAGAAGATTCTGCAACTATTGTCCGCGAGGCTGCTGCACATAATCTTGCATTGCTGCTTCCACTCTTCCCGAACATGGACAAATATTACAAGGTCAGCCTCACTAATATGCTTCAGAGGCTCTCATGGAGAGGAATTCTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.14

Weight (kDa)

5.22

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
AccII CGCG 1 cut(s) 405
AciI CCGC 1 cut(s) 403
AcsI RAATTY 2 cut(s) 323, 513
AcuI CTGAAG 1 cut(s) 476
AfiI CCNNNNNNNGG 4 cut(s) 205, 252, 253, 454
AgsI TTSAA 2 cut(s) 44, 371
AluBI AGCT 2 cut(s) 16, 316
AluI AGCT 2 cut(s) 16, 316
Ama87I CYCGRG 1 cut(s) 66
ApeKI GCWGC 6 cut(s) 60, 118, 289, 410, 413, 433
ApoI RAATTY 2 cut(s) 323, 513
Asp700I GAANNNNTTC 1 cut(s) 240
AvaI CYCGRG 1 cut(s) 66
BbvI GCAGC 6 cut(s) 72, 130, 276, 397, 400, 420
BccI CCATC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BfaI CTAG 1 cut(s) 293
BisI GCNGC 6 cut(s) 61, 119, 290, 411, 414, 434
BlsI GCNGC 6 cut(s) 62, 120, 291, 412, 415, 435
BmeT110I CYCGRG 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 204
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 252, 253, 454
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 428
BseGI GGATG 3 cut(s) 49, 145, 214
BseLI CCNNNNNNNGG 4 cut(s) 205, 252, 253, 454
BseMI GCAATG 1 cut(s) 428
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 6 cut(s) 72, 130, 276, 397, 400, 420
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 66
BslI CCNNNNNNNGG 4 cut(s) 205, 252, 253, 454
BsoBI CYCGRG 1 cut(s) 66
BspACI CCGC 1 cut(s) 403
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 428
BsrI ACTGG 1 cut(s) 247
Bst6I CTCTTC 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 287, 318
BstDEI CTNAG 2 cut(s) 204, 336
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 3 cut(s) 49, 145, 214
BstFNI CGCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 2 cut(s) 185, 496
BstNSI RCATGY 1 cut(s) 192
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 6 cut(s) 72, 130, 276, 397, 400, 420
BtsCI GGATG 3 cut(s) 49, 145, 214
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 287, 318
CviAII CATG 5 cut(s) 31, 189, 306, 454, 504
CviJI RGCY 6 cut(s) 16, 289, 316, 410, 477, 499
CviKI_1 RGCY 6 cut(s) 16, 289, 316, 410, 477, 499
DdeI CTNAG 2 cut(s) 204, 336
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 476
Eco88I CYCGRG 1 cut(s) 66
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 513
FaeI CATG 5 cut(s) 34, 192, 309, 457, 507
FatI CATG 5 cut(s) 30, 188, 305, 453, 503
FauNDI CATATG 1 cut(s) 270
Fnu4HI GCNGC 6 cut(s) 61, 119, 290, 411, 414, 434
FokI GGATG 3 cut(s) 36, 152, 221
Fsp4HI GCNGC 6 cut(s) 61, 119, 290, 411, 414, 434
FspBI CTAG 1 cut(s) 293
GluI GCNGC 6 cut(s) 61, 119, 290, 411, 414, 434
Hin1II CATG 5 cut(s) 34, 192, 309, 457, 507
HinfI GANTC 4 cut(s) 71, 340, 347, 386
Hpy188I TCNGA 2 cut(s) 495, 519
Hpy188III TCNNGA 6 cut(s) 53, 68, 163, 335, 344, 448
HpyCH4V TGCA 5 cut(s) 179, 320, 392, 416, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 496
HpyF3I CTNAG 2 cut(s) 204, 336
Hsp92II CATG 5 cut(s) 34, 192, 309, 457, 507
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 7 cut(s) 66, 123, 170, 176, 260, 271, 348
Lsp1109I GCAGC 6 cut(s) 72, 130, 276, 397, 400, 420
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 193
MboII GAAGA 4 cut(s) 11, 138, 395, 436
MluCI AATT 4 cut(s) 129, 236, 323, 513
MnlI CCTC 5 cut(s) 271, 400, 488, 489, 503
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 3 cut(s) 77, 93, 173
MslI CAYNNNNRTG 2 cut(s) 273, 485
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 185, 496
NdeI CATATG 1 cut(s) 270
NlaIII CATG 5 cut(s) 34, 192, 309, 457, 507
NspI RCATGY 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 4 cut(s) 71, 340, 347, 386
PkrI GCNGC 6 cut(s) 62, 120, 291, 412, 415, 435
PsiI TTATAA 1 cut(s) 134
RseI CAYNNNNRTG 2 cut(s) 273, 485
SaqAI TTAA 3 cut(s) 77, 93, 173
SatI GCNGC 6 cut(s) 61, 119, 290, 411, 414, 434
SetI ASST 3 cut(s) 18, 318, 474
SmiMI CAYNNNNRTG 2 cut(s) 273, 485
Sse9I AATT 4 cut(s) 129, 236, 323, 513
SsiI CCGC 1 cut(s) 403
SspI AATATT 2 cut(s) 169, 464
SspMI CTAG 1 cut(s) 293
TasI AATT 4 cut(s) 129, 236, 323, 513
TfiI GAWTC 4 cut(s) 71, 340, 347, 386
Tru1I TTAA 3 cut(s) 77, 93, 173
Tru9I TTAA 3 cut(s) 77, 93, 173
TscAI CASTG 1 cut(s) 254
TseI GCWGC 6 cut(s) 60, 118, 289, 410, 413, 433
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 1 cut(s) 254
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 2 cut(s) 323, 513
XceI RCATGY 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.