Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009487

Physical Location & Seq

Genomic Coordinates Forward (+)

20653849 .. 20655019

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G205300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGTGCTGCTCATCATTTCGATCGTGGCCCGAAAAGCAATCACCAATTCCGCTTCATCTTCTTCAAAGCCGTCCATCCTTGCTTGAGTTTCAACCAGCCAACCCGACAGAGAATCGACAAAGTCTACCACCAAATGGAGGAGTACGGATTCTACGACCAAACTTTTATACTCCAGCTTCTTTCAAAGGTAACAGACAAACCGCCCAAGAACGCTCTGACTGCCTGCGAGAGCGCCTACTGTGTCGTCATGCATGCCTTTCTTCAGGAGGCGGTGGGGGATTTTAACAGAAAAGATTATGACAGTATGCTTGAAGATGAAGGTGTAGCGCCTAGAGCTCAAGCCAGCTGTGAAATTACTTTCATAACCTCGCCTAGTCCGGTGGACCCGCTGAAAGAGATCCATAGGCAGATGGGAATTCTCATTGCCATGGCTGTGGCCACTGGCCATGAACTTCTTGGTCACCGAATGATGAAGAGCACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

163

Amino Acids

18.42

Weight (kDa)

6.74

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09360 AT1G09370
fragaria_vesca	FvH4_6g07980 FvH4_6g08020
malus_domestica	MD12G1203300.v1.1 MD12G1203400.v1.1 MD12G1203500.v1.1
prunus_persica	Prupe.1G205300_v2.0.a1 Prupe.6G195000_v2.0.a1 Prupe.6G309200_v2.0.a1 Prupe.6G309300_v2.0.a1
pyrus_communis	pycom12g19010
rosa_chinensis	RchiOBHm_Chr3g0457691
rosa_laevigata	RLG00000025195
rosa_multiflora	Rmu_sc0007395.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421570
rosa_rugosa	Rorug03G0022600
rosa_samantha	Rh3AG083300 Rh3BG085800 Rh3CG086100 Rh3DG086700
rosa_wichuraiana	Rw3G007130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	4 cut(s)	52, 203, 272, 389
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	2 cut(s)	438, 445
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	136, 139
AgsI	TTSAA	4 cut(s)	67, 94, 186, 314
AluBI	AGCT	3 cut(s)	178, 338, 348
AluI	AGCT	3 cut(s)	178, 338, 348
Alw21I	GWGCWC	2 cut(s)	340, 482
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	3 cut(s)	28, 438, 445
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	417
AspLEI	GCGC	2 cut(s)	236, 331
AspS9I	GGNCC	2 cut(s)	29, 385
AsuHPI	GGTGA	2 cut(s)	35, 455
AvaII	GGWCC	1 cut(s)	385
BalI	TGGCCA	2 cut(s)	440, 447
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	2 cut(s)	340, 482
BccI	CCATC	2 cut(s)	84, 406
BceAI	ACGGC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	333, 375
BfoI	RGCGCY	2 cut(s)	237, 332
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	29, 385
BmiI	GGNNCC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	158
BpuEI	CTTGAG	2 cut(s)	106, 324
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 139
Bse1I	ACTGG	1 cut(s)	448
Bse3DI	GCAATG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	136, 139
BseMI	GCAATG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	30, 440, 447
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	2 cut(s)	340, 482
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	136, 139
BsnI	GGCC	3 cut(s)	30, 440, 447
Bsp1286I	GDGCHC	2 cut(s)	340, 482
Bsp143I	GATC	2 cut(s)	22, 399
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	4 cut(s)	52, 203, 272, 389
BspANI	GGCC	3 cut(s)	30, 440, 447
BspLI	GGNNCC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	394
BspQI	GCTCTTC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	2 cut(s)	22, 399
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	242, 305
Bst6I	CTCTTC	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	226, 255, 346
BstDSI	CCRYGG	1 cut(s)	429
BstEII	GGTNACC	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	76
BstH2I	RGCGCY	2 cut(s)	237, 332
BstHHI	GCGC	2 cut(s)	236, 331
BstKTI	GATC	2 cut(s)	25, 402
BstMBI	GATC	2 cut(s)	22, 399
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 221, 335
BstNSI	RCATGY	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	399
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	30, 440, 447
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	3 cut(s)	226, 255, 346
CfoI	GCGC	2 cut(s)	236, 331
Cfr13I	GGNCC	2 cut(s)	29, 385
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	4 cut(s)	250, 254, 430, 449
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	2 cut(s)	24, 401
DpnII	GATC	2 cut(s)	22, 399
EaeI	YGGCCR	2 cut(s)	438, 445
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	429
EcoT22I	ATGCAT	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	4 cut(s)	253, 257, 433, 452
FaiI	YATR	9 cut(s)	170, 251, 255, 300, 308, 365, 405, 431, 450
FatI	CATG	4 cut(s)	249, 253, 429, 448
FauI	CCCGC	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	2 cut(s)	333, 375
GlaI	GCGC	2 cut(s)	235, 330
GluI	GCNGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	2 cut(s)	237, 332
HaeIII	GGCC	3 cut(s)	30, 440, 447
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	2 cut(s)	236, 331
Hin1II	CATG	4 cut(s)	253, 257, 433, 452
Hin6I	GCGC	2 cut(s)	234, 329
HinP1I	GCGC	2 cut(s)	234, 329
HinfI	GANTC	2 cut(s)	114, 150
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	2 cut(s)	35, 455
Hpy166II	GTNNAC	2 cut(s)	127, 385
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	127, 385
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	2 cut(s)	242, 305
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 221, 335
Hsp92II	CATG	4 cut(s)	253, 257, 433, 452
HspAI	GCGC	2 cut(s)	234, 329
Kzo9I	GATC	2 cut(s)	22, 399
LguI	GCTCTTC	1 cut(s)	470
LpnPI	CCDG	7 cut(s)	110, 188, 238, 251, 358, 393, 429
MaeI	CTAG	2 cut(s)	333, 375
MaeIII	GTNAC	2 cut(s)	190, 461
MalI	GATC	2 cut(s)	24, 401
MboI	GATC	2 cut(s)	22, 399
MboII	GAAGA	5 cut(s)	52, 55, 254, 326, 487
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	340, 482
MlsI	TGGCCA	2 cut(s)	440, 447
MluCI	AATT	3 cut(s)	47, 354, 417
MluNI	TGGCCA	2 cut(s)	440, 447
MnlI	CCTC	3 cut(s)	133, 262, 379
Mox20I	TGGCCA	2 cut(s)	440, 447
Mph1103I	ATGCAT	1 cut(s)	255
MscI	TGGCCA	2 cut(s)	440, 447
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	428, 434
Msp20I	TGGCCA	2 cut(s)	440, 447
MspA1I	CMGCKG	2 cut(s)	348, 391
MspI	CCGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	36, 221, 335
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	2 cut(s)	22, 399
NlaIII	CATG	4 cut(s)	253, 257, 433, 452
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	461
NsiI	ATGCAT	1 cut(s)	255
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	114, 150
PflFI	GACNNNGTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	10
Ple19I	CGATCG	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	340
PspEI	GGTNACC	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	29, 385
PsuI	RGATCY	1 cut(s)	399
PsyI	GACNNNGTC	1 cut(s)	122
PvuI	CGATCG	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	348
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	2 cut(s)	428, 434
SacI	GAGCTC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	22, 399
Sau96I	GGNCC	2 cut(s)	29, 385
SduI	GDGCHC	2 cut(s)	340, 482
SetI	ASST	6 cut(s)	180, 192, 325, 340, 350, 371
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	2 cut(s)	428, 434
SmlI	CTYRAG	2 cut(s)	85, 339
SmoI	CTYRAG	2 cut(s)	85, 339
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	3 cut(s)	47, 354, 417
SsiI	CCGC	4 cut(s)	52, 203, 272, 389
SspMI	CTAG	2 cut(s)	333, 375
SstI	GAGCTC	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	242, 305
TaqI	TCGA	2 cut(s)	21, 117
TasI	AATT	3 cut(s)	47, 354, 417
TfiI	GAWTC	2 cut(s)	114, 150
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	5 cut(s)	46, 333, 352, 465, 488
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	448
Tth111I	GACNNNGTC	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	417
XceI	RCATGY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	2 cut(s)	333, 375
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.