RLG00000025195

Inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009487
Physical Location & Seq
Reverse (-)
42930687 .. 42931274
588 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025195

Sequence Viewer

Length: 588 bp
ATGGCTTTTGCTAGTAAGTTAGTACTTGTTTCATTACTGTTGATTGTGTTCCTCATGATCAATATCAAACCATCACTGAGTCAAAGCACACAGCAACTGGTCGAGAAGATATGCCGGTCCACAGAGGACTATGGGTTTTGCAGGAGAACTTTCCAAGCACACTTGAAGTCCCCAAATGCCAATATTGTTGACCTAACCCAGATAACCCTAGAGGTGGCAACAGACCACGCAACCAACACTCACGAGTTTATCAGGCAGACGCTTGAAACAACAAGAGACCCGGCATTGAAGAACGCTCTTACCGAGTGTGAGAATACATATGTTCTAATCATGCATGCATTTGACTTGGCGGTGGTGTCGTTTTTCTTCGGCGACTACAAAAATATTGAGAAGGAGGAGCGCATCACACCGCGAGCAGAAGCGAGTTGCGAAGCAACACTCTACACGCCGCCAAATAAGCAGAAGCACATTTTGGACGAAAGAAGCAGGGAAATGAGGATTTTCATTGGCATGTCTCTGGTTTCAGCGCAGGAACTCGTTCGGTCAAGGCTTAAGCCAGCACATGCTCCTGCACCTGCGCCGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

196

Amino Acids

22.09

Weight (kDa)

7.01

Isoelectric Point (pI)

59.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 33 - 131 8.9e-13 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 583
Acc36I ACCTGC 1 cut(s) 583
AccII CGCG 1 cut(s) 412
AciI CCGC 4 cut(s) 350, 410, 449, 581
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 214
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 3 cut(s) 166, 266, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
Alw26I GTCTC 2 cut(s) 270, 519
AlwNI CAGNNNCTG 1 cut(s) 97
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 3 cut(s) 402, 529, 580
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 281
AvaII GGWCC 1 cut(s) 117
BauI CACGAG 1 cut(s) 242
BccI CCATC 1 cut(s) 79
BclI TGATCA 1 cut(s) 57
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 270, 519
BfaI CTAG 2 cut(s) 12, 209
BfmI CTRYAG 1 cut(s) 584
BfrI CTTAAG 1 cut(s) 551
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 2 cut(s) 449, 581
BlsI GCNGC 2 cut(s) 450, 582
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 411
BpuMI CCSGG 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 62
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 410
BsgI GTGCAG 1 cut(s) 555
Bsh1236I CGCG 1 cut(s) 412
BsiSI CCGG 2 cut(s) 115, 281
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 270, 519
BsmFI GGGAC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 4 cut(s) 350, 410, 449, 581
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 1 cut(s) 412
BspHI TCATGA 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 583
BspTI CTTAAG 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 114
BssMI GATC 1 cut(s) 57
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 39
BstAFI CTTAAG 1 cut(s) 551
BstC8I GCNNGC 3 cut(s) 336, 414, 558
BstDEI CTNAG 1 cut(s) 77
BstFNI CGCG 1 cut(s) 412
BstHHI GCGC 3 cut(s) 402, 529, 580
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 2 cut(s) 270, 519
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstNSI RCATGY 3 cut(s) 338, 514, 566
BstSCI CCNGG 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 584
BstUI CGCG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 74
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 3 cut(s) 336, 414, 558
CaiI CAGNNNCTG 1 cut(s) 97
CciI TCATGA 1 cut(s) 54
CfoI GCGC 3 cut(s) 402, 529, 580
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 23
CviAII CATG 5 cut(s) 55, 331, 335, 511, 563
CviJI RGCY 3 cut(s) 5, 550, 556
CviKI_1 RGCY 3 cut(s) 5, 550, 556
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 77
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 117
EcoT22I ATGCAT 2 cut(s) 336, 340
FaeI CATG 5 cut(s) 58, 334, 338, 514, 566
FaiI YATR 9 cut(s) 56, 112, 132, 319, 321, 332, 336, 512, 564
FaqI GGGAC 1 cut(s) 154
FatI CATG 5 cut(s) 54, 330, 334, 510, 562
FauNDI CATATG 1 cut(s) 319
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 449, 581
Fsp4HI GCNGC 2 cut(s) 449, 581
FspBI CTAG 2 cut(s) 12, 209
GlaI GCGC 3 cut(s) 401, 528, 579
GluI GCNGC 2 cut(s) 449, 581
HapII CCGG 2 cut(s) 115, 281
HgaI GACGC 1 cut(s) 268
HhaI GCGC 3 cut(s) 402, 529, 580
Hin1II CATG 5 cut(s) 58, 334, 338, 514, 566
Hin6I GCGC 3 cut(s) 400, 527, 578
HinP1I GCGC 3 cut(s) 400, 527, 578
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 1 cut(s) 79
HpaII CCGG 2 cut(s) 115, 281
Hpy166II GTNNAC 2 cut(s) 120, 190
Hpy188III TCNNGA 3 cut(s) 55, 103, 242
Hpy8I GTNNAC 2 cut(s) 120, 190
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 4 cut(s) 141, 334, 338, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 5 cut(s) 58, 334, 338, 514, 566
HspAI GCGC 3 cut(s) 400, 527, 578
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 2 cut(s) 397, 571
LweI GCATC 1 cut(s) 411
MaeI CTAG 2 cut(s) 12, 209
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 3 cut(s) 118, 301, 358
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 5 cut(s) 62, 118, 205, 388, 489
Mph1103I ATGCAT 2 cut(s) 336, 340
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 583
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 2 cut(s) 115, 281
MspR9I CCNGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 457
NciI CCSGG 1 cut(s) 281
NdeI CATATG 1 cut(s) 319
NdeII GATC 1 cut(s) 57
NlaIII CATG 5 cut(s) 58, 334, 338, 514, 566
NsiI ATGCAT 2 cut(s) 336, 340
NspI RCATGY 3 cut(s) 338, 514, 566
PaeI GCATGC 1 cut(s) 338
PagI TCATGA 1 cut(s) 54
PaqCI CACCTGC 1 cut(s) 583
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 537
PkrI GCNGC 2 cut(s) 450, 582
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 97
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 509
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 2 cut(s) 449, 581
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 117
ScaI AGTACT 1 cut(s) 24
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 281
SetI ASST 3 cut(s) 195, 216, 577
SfaNI GCATC 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 584
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SphI GCATGC 1 cut(s) 338
SsiI CCGC 4 cut(s) 350, 410, 449, 581
SspI AATATT 2 cut(s) 184, 385
SspMI CTAG 2 cut(s) 12, 209
StyD4I CCNGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 102
TaqII GACCGA 1 cut(s) 531
TatI WGTACW 1 cut(s) 22
TauI GCSGC 2 cut(s) 451, 583
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 1 cut(s) 81
TspDTI ATGAA 2 cut(s) 21, 493
TspRI CASTG 1 cut(s) 81
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 117
XceI RCATGY 3 cut(s) 338, 514, 566
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 2 cut(s) 12, 209
ZrmI AGTACT 1 cut(s) 24
Zsp2I ATGCAT 2 cut(s) 336, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.