RchiOBHm_Chr3g0457691

Inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0009487
Physical Location & Seq
Forward (+)
6718418 .. 6719041
624 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42444

Sequence Viewer

Length: 624 bp
ATGGCTTTTGCTAGTAAGTTAGTACTTGTTTCATTACTGTTGGTTGTGTTCCTCATGATCAATATCAAACCATCACTGAGTCAAAGCACACAGCAACTGATCGAGAAGATATGCCGGTCCACTGAGGACTATGGGTTTTGCAGGAGAACTTTCGAAGCACACTTGAAGTCCCCAAATGCCAATATTGTTGACCTAACCCAGATAACCCTAGAGGTGGCAACAGACCACGCAACCAAAACTCACGAGTTTATCAGGCAGACGCTTGAAACAACAAGAGACCCGGCATTGAAGAACGCTCTTTCCGAGTGTGAGAATGCTTATGGTCTAATCATGCATGCATTTGAGTTGGCGGTGGTGTCGTTTTTCTTCGGCGACTACAAAAATATTGAGAAGGAGGAGCGCATCACACCGCGAACAGAAGCGAGCTGCGAAGCATCACTCTACACGCCACCAAATAAGCAGAAGCACATTTTGGATGAAAGAAGCAGGGAAATGAGGATTTTCATTGGCATGTCGCTGGTTTCAGCGCAGGAACTCGTTCGATCAAAGCTTAAGTCAGCACCTGTTCCTGCACCTGCTCCGCTGTTCGTAACATCACCATCCAAGGCATCCGTTTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

207

Amino Acids

23.29

Weight (kDa)

7.71

Isoelectric Point (pI)

63.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 33 - 120 1.6e-13 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 583
Acc36I ACCTGC 1 cut(s) 583
AccII CGCG 1 cut(s) 412
AciI CCGC 3 cut(s) 350, 410, 581
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 214
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 3 cut(s) 166, 266, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AloI GAACNNNNNNTCC 2 cut(s) 284, 316
AluBI AGCT 2 cut(s) 426, 550
AluI AGCT 2 cut(s) 426, 550
Alw26I GTCTC 1 cut(s) 270
AlwNI CAGNNNCTG 2 cut(s) 97, 563
ApeKI GCWGC 1 cut(s) 426
ArsI GACNNNNNNTTYG 2 cut(s) 539, 571
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 2 cut(s) 402, 529
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 588
AsuII TTCGAA 1 cut(s) 153
AvaII GGWCC 1 cut(s) 117
BauI CACGAG 1 cut(s) 242
BbvI GCAGC 1 cut(s) 413
BccI CCATC 2 cut(s) 79, 607
BclI TGATCA 1 cut(s) 57
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 2 cut(s) 12, 209
BfrI CTTAAG 1 cut(s) 551
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 3 cut(s) 411, 443, 617
Bpu14I TTCGAA 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 603
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 3 cut(s) 481, 599, 608
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 68, 114
BseRI GAGGAG 1 cut(s) 410
BseXI GCAGC 1 cut(s) 413
BsgI GTGCAG 1 cut(s) 555
Bsh1236I CGCG 1 cut(s) 412
BsiSI CCGG 2 cut(s) 115, 281
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 319
Bso31I GGTCTC 1 cut(s) 270
Bsp119I TTCGAA 1 cut(s) 153
Bsp143I GATC 3 cut(s) 57, 99, 542
BspACI CCGC 3 cut(s) 350, 410, 581
BspCNI CTCAG 2 cut(s) 69, 115
BspFNI CGCG 1 cut(s) 412
BspHI TCATGA 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 583
BspT104I TTCGAA 1 cut(s) 153
BspTI CTTAAG 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 3 cut(s) 57, 99, 542
BssSI CACGAG 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 603
Bst2BI CACGAG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 39
BstAFI CTTAAG 1 cut(s) 551
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 336, 424
BstDEI CTNAG 2 cut(s) 77, 123
BstF5I GGATG 3 cut(s) 481, 599, 608
BstFNI CGCG 1 cut(s) 412
BstHHI GCGC 2 cut(s) 402, 529
BstKTI GATC 3 cut(s) 60, 102, 545
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 3 cut(s) 57, 99, 542
BstNSI RCATGY 2 cut(s) 338, 514
BstSCI CCNGG 1 cut(s) 279
BstUI CGCG 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 413
BtsCI GGATG 3 cut(s) 481, 599, 608
BtsIMutI CAGTG 2 cut(s) 74, 120
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 2 cut(s) 336, 424
CaiI CAGNNNCTG 2 cut(s) 97, 563
CciI TCATGA 1 cut(s) 54
CfoI GCGC 2 cut(s) 402, 529
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 23
CviAII CATG 4 cut(s) 55, 331, 335, 511
CviJI RGCY 3 cut(s) 5, 426, 550
CviKI_1 RGCY 3 cut(s) 5, 426, 550
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 2 cut(s) 77, 123
DpnI GATC 3 cut(s) 59, 101, 544
DpnII GATC 3 cut(s) 57, 99, 542
Eco130I CCWWGG 1 cut(s) 603
Eco31I GGTCTC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 2 cut(s) 336, 340
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 4 cut(s) 58, 334, 338, 514
FaiI YATR 7 cut(s) 56, 112, 132, 321, 332, 336, 512
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 54, 330, 334, 510
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 3 cut(s) 488, 586, 595
Fsp4HI GCNGC 1 cut(s) 427
FspBI CTAG 2 cut(s) 12, 209
GlaI GCGC 2 cut(s) 401, 528
GluI GCNGC 1 cut(s) 427
HapII CCGG 2 cut(s) 115, 281
HgaI GACGC 1 cut(s) 268
HhaI GCGC 2 cut(s) 402, 529
Hin1II CATG 4 cut(s) 58, 334, 338, 514
Hin6I GCGC 2 cut(s) 400, 527
HinP1I GCGC 2 cut(s) 400, 527
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 1 cut(s) 79
HpaII CCGG 2 cut(s) 115, 281
HphI GGTGA 1 cut(s) 588
Hpy166II GTNNAC 2 cut(s) 120, 190
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 3 cut(s) 55, 103, 242
Hpy8I GTNNAC 2 cut(s) 120, 190
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 4 cut(s) 141, 334, 338, 572
HpyF3I CTNAG 2 cut(s) 77, 123
Hsp92II CATG 4 cut(s) 58, 334, 338, 514
HspAI GCGC 2 cut(s) 400, 527
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 3 cut(s) 57, 99, 542
LmnI GCTCC 2 cut(s) 397, 583
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 3 cut(s) 411, 443, 617
MaeI CTAG 2 cut(s) 12, 209
MaeIII GTNAC 1 cut(s) 589
MalI GATC 3 cut(s) 59, 101, 544
MboI GATC 3 cut(s) 57, 99, 542
MboII GAAGA 3 cut(s) 118, 301, 358
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 5 cut(s) 62, 118, 205, 388, 489
Mph1103I ATGCAT 2 cut(s) 336, 340
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 2 cut(s) 552, 622
MslI CAYNNNNRTG 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 583
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 2 cut(s) 115, 281
MspR9I CCNGG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 319
MvnI CGCG 1 cut(s) 412
NciI CCSGG 1 cut(s) 281
NdeII GATC 3 cut(s) 57, 99, 542
NlaIII CATG 4 cut(s) 58, 334, 338, 514
NsiI ATGCAT 2 cut(s) 336, 340
NspI RCATGY 2 cut(s) 338, 514
NspV TTCGAA 1 cut(s) 153
PaeI GCATGC 1 cut(s) 338
PagI TCATGA 1 cut(s) 54
PaqCI CACCTGC 1 cut(s) 583
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PctI GAATGC 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 537
PkrI GCNGC 1 cut(s) 428
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 117
PstNI CAGNNNCTG 2 cut(s) 97, 563
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 509
SaqAI TTAA 2 cut(s) 552, 622
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 3 cut(s) 57, 99, 542
Sau96I GGNCC 1 cut(s) 117
ScaI AGTACT 1 cut(s) 24
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 281
SetI ASST 6 cut(s) 195, 216, 428, 552, 565, 577
SfaNI GCATC 3 cut(s) 411, 443, 617
SfuI TTCGAA 1 cut(s) 153
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SphI GCATGC 1 cut(s) 338
SsiI CCGC 3 cut(s) 350, 410, 581
SspI AATATT 2 cut(s) 184, 385
SspMI CTAG 2 cut(s) 12, 209
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 102, 153, 541
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 2 cut(s) 552, 622
Tru9I TTAA 2 cut(s) 552, 622
TscAI CASTG 2 cut(s) 81, 127
TseI GCWGC 1 cut(s) 426
TspDTI ATGAA 4 cut(s) 21, 492, 493, 608
TspGWI ACGGA 1 cut(s) 601
TspRI CASTG 2 cut(s) 81, 127
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 117
XceI RCATGY 2 cut(s) 338, 514
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 2 cut(s) 12, 209
ZrmI AGTACT 1 cut(s) 24
Zsp2I ATGCAT 2 cut(s) 336, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.