Prupe.6G195000_v2.0.a1

Inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0009487
Physical Location & Seq
Forward (+)
20243171 .. 20245168
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G195000.1

Sequence Viewer

Length: 342 bp
ATGACGACGACGGCGGTGATGGGCTCTGCAAAGGTGGATGGCAGAAGCGGATTCTGCAATTCCAGCTCGACATTCTACAGCAAGCGCAAGCCCATACCACTCCCTCACCACGATTCCTTTTTTTTTTTTTTTTTCAGCCCTTTGAAAGCACAGGATTATTCTTTTGCTGAATTCAGTCCCAGCCACCACAAAAGCTGTGAAATTACTTTCACAACCCCGCCTAGTCCGGTGGACCCGCTGAAAGAGATCCATAGGCAGATGGGAATTCTCATGGCCATGGCTGTGGTCACTGGCCATGAACTTCTTGGCCCTACAACTCAACAACAAAACACTAAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

114

Amino Acids

12.63

Weight (kDa)

9.06

Isoelectric Point (pI)

60.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 14, 48, 218, 236
AclWI GGATC 1 cut(s) 241
AcoI YGGCCR 2 cut(s) 273, 292
AcsI RAATTY 2 cut(s) 170, 264
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 2 cut(s) 66, 195
AluI AGCT 2 cut(s) 66, 195
AlwI GGATC 1 cut(s) 241
AoxI GGCC 3 cut(s) 273, 292, 307
ApoI RAATTY 2 cut(s) 170, 264
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 232, 308
AsuHPI GGTGA 2 cut(s) 28, 98
AvaII GGWCC 1 cut(s) 232
BalI TGGCCA 2 cut(s) 275, 294
BanII GRGCYC 1 cut(s) 26
BccI CCATC 3 cut(s) 13, 32, 253
BceAI ACGGC 1 cut(s) 27
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 232, 308
BmiI GGNNCC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 179
BshFI GGCC 3 cut(s) 275, 294, 309
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 3 cut(s) 275, 294, 309
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 246
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 4 cut(s) 14, 48, 218, 236
BspANI GGCC 3 cut(s) 275, 294, 309
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 1 cut(s) 241
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 83, 89
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 54, 63
BstSFI CTRYAG 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 283
BstYI RGATCY 1 cut(s) 246
BsuRI GGCC 3 cut(s) 275, 294, 309
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 83, 89
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 232, 308
CviAII CATG 3 cut(s) 271, 277, 296
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
EaeI YGGCCR 2 cut(s) 273, 292
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 232
EcoRI GAATTC 2 cut(s) 170, 264
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 274, 280, 299
FaiI YATR 5 cut(s) 95, 252, 272, 278, 297
FaqI GGGAC 1 cut(s) 162
FatI CATG 3 cut(s) 270, 276, 295
FauI CCCGC 2 cut(s) 225, 243
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 1 cut(s) 26
FspBI CTAG 1 cut(s) 222
GlaI GCGC 1 cut(s) 86
GsaI CCCAGC 1 cut(s) 183
HaeIII GGCC 3 cut(s) 275, 294, 309
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 87
Hin1II CATG 3 cut(s) 274, 280, 299
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 2 cut(s) 51, 113
HpaII CCGG 1 cut(s) 227
HphI GGTGA 2 cut(s) 28, 98
Hpy166II GTNNAC 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 2 cut(s) 10, 13
HpyCH4V TGCA 2 cut(s) 29, 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 63
Hsp92II CATG 3 cut(s) 274, 280, 299
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 246
LpnPI CCDG 5 cut(s) 76, 137, 193, 240, 276
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MflI RGATCY 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 2 cut(s) 275, 294
MluCI AATT 4 cut(s) 58, 170, 201, 264
MluNI TGGCCA 2 cut(s) 275, 294
MnlI CCTC 1 cut(s) 114
Mox20I TGGCCA 2 cut(s) 275, 294
MscI TGGCCA 2 cut(s) 275, 294
MslI CAYNNNNRTG 2 cut(s) 275, 281
Msp20I TGGCCA 2 cut(s) 275, 294
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 54, 63
NcoI CCATGG 1 cut(s) 276
NdeII GATC 1 cut(s) 246
NlaIII CATG 3 cut(s) 274, 280, 299
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 51, 113
PspFI CCCAGC 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 2 cut(s) 232, 308
PsuI RGATCY 1 cut(s) 246
RseI CAYNNNNRTG 2 cut(s) 275, 281
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 2 cut(s) 232, 308
SduI GDGCHC 1 cut(s) 26
SetI ASST 4 cut(s) 36, 68, 197, 341
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 275, 281
Sse9I AATT 4 cut(s) 58, 170, 201, 264
SsiI CCGC 4 cut(s) 14, 48, 218, 236
SspMI CTAG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 276
TaqI TCGA 1 cut(s) 68
TasI AATT 4 cut(s) 58, 170, 201, 264
TfiI GAWTC 2 cut(s) 51, 113
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 2 cut(s) 170, 264
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.