Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009487

Physical Location & Seq

Genomic Coordinates Reverse (-)

27789478 .. 27790065

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G309200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTTCTGCTAATGCTCATTGCTGCATCAATCTTCTTCCTCTAGCCCTCGTCATATTCATCCTCTTCAATGCCGTCCATCCTTGCTTGAGTTTCAACCAGCCAACCCGACAGAGAATCGACAAAGTCTACCACCAAATGGAGGAGTACGGATTCTGCGACCAGACCTTCACCCAAAACATAAAAACTCCATCAGCGGACTTTGCTCGGTTGACCCAAGTAGCCCTAGACCAGACCACACAGAATGCAGCAAGCACACATGCTTTTATACTCCAGCTTCTTTCAAAGATAACAGACAAGCCGCCCAAGAACGCTCTGACTGCCTGCGAGAGCGCCTACTGTGTCGTCATGCAGGCCTTTCTTCAGGAGGCGGTGGGGGATTTTAACAGAAAAGATTATGACAGTATGCTTGAAGATGAAGGTGTAGCGCCTAGAGCTCAAGCCAGCTGTGAAATTACTTTCATAACCCCGCCTAGTCCGGTGGACCCGCTGAAAGAGATCCATAGGCAGATGGGAATTCTCATTGCCATGGCTGTGGTCACTGGCCATGAACTTCTTGGTCACCGAATGATGAAGAGCACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

196

Amino Acids

21.66

Weight (kDa)

5.94

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09360 AT1G09370
fragaria_vesca	FvH4_6g07980 FvH4_6g08020
malus_domestica	MD12G1203300.v1.1 MD12G1203400.v1.1 MD12G1203500.v1.1
prunus_persica	Prupe.1G205300_v2.0.a1 Prupe.6G195000_v2.0.a1 Prupe.6G309200_v2.0.a1 Prupe.6G309300_v2.0.a1
pyrus_communis	pycom12g19010
rosa_chinensis	RchiOBHm_Chr3g0457691
rosa_laevigata	RLG00000025195
rosa_multiflora	Rmu_sc0007395.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421570
rosa_rugosa	Rorug03G0022600
rosa_samantha	Rh3AG083300 Rh3BG085800 Rh3CG086100 Rh3DG086700
rosa_wichuraiana	Rw3G007130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	5 cut(s)	197, 302, 371, 470, 488
AclWI	GGATC	1 cut(s)	493
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	139, 142
AgsI	TTSAA	4 cut(s)	70, 97, 285, 413
AluBI	AGCT	3 cut(s)	277, 437, 447
AluI	AGCT	3 cut(s)	277, 437, 447
Alw21I	GWGCWC	2 cut(s)	439, 581
AlwI	GGATC	1 cut(s)	493
AoxI	GGCC	2 cut(s)	354, 544
ApeKI	GCWGC	2 cut(s)	24, 248
ApoI	RAATTY	1 cut(s)	516
AspLEI	GCGC	2 cut(s)	335, 430
AspS9I	GGNCC	1 cut(s)	484
AsuHPI	GGTGA	2 cut(s)	163, 554
AvaII	GGWCC	1 cut(s)	484
BalI	TGGCCA	1 cut(s)	546
BanII	GRGCYC	1 cut(s)	439
Bbv12I	GWGCWC	2 cut(s)	439, 581
BbvI	GCAGC	2 cut(s)	11, 260
BccI	CCATC	3 cut(s)	87, 199, 505
BceAI	ACGGC	1 cut(s)	59
BfaI	CTAG	4 cut(s)	44, 227, 432, 474
BfoI	RGCGCY	2 cut(s)	336, 431
BisI	GCNGC	3 cut(s)	25, 249, 302
BlsI	GCNGC	3 cut(s)	26, 250, 303
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	486
BmsI	GCATC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	257
BpuEI	CTTGAG	2 cut(s)	109, 423
BsaJI	CCNNGG	1 cut(s)	528
BsaWI	WCCGGW	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 142
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	2 cut(s)	19, 522
BseDI	CCNNGG	1 cut(s)	528
BseGI	GGATG	2 cut(s)	60, 79
BseLI	CCNNNNNNNGG	2 cut(s)	139, 142
BseMI	GCAATG	2 cut(s)	19, 522
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	11, 260
BshFI	GGCC	2 cut(s)	356, 546
BsiHKAI	GWGCWC	2 cut(s)	439, 581
BsiSI	CCGG	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	139, 142
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	356, 546
Bsp1286I	GDGCHC	2 cut(s)	439, 581
Bsp143I	GATC	1 cut(s)	498
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	5 cut(s)	197, 302, 371, 470, 488
BspANI	GGCC	2 cut(s)	356, 546
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	1 cut(s)	493
BspQI	GCTCTTC	1 cut(s)	569
BsrDI	GCAATG	2 cut(s)	19, 522
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	528
BssMI	GATC	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	341, 404
Bst6I	CTCTTC	2 cut(s)	71, 569
BstC8I	GCNNGC	4 cut(s)	253, 325, 354, 445
BstDSI	CCRYGG	1 cut(s)	528
BstEII	GGTNACC	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	60, 79
BstH2I	RGCGCY	2 cut(s)	336, 431
BstHHI	GCGC	2 cut(s)	335, 430
BstKTI	GATC	1 cut(s)	501
BstMBI	GATC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 320, 434
BstNSI	RCATGY	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	11, 260
BstX2I	RGATCY	1 cut(s)	498
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	356, 546
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	60, 79
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	4 cut(s)	253, 325, 354, 445
CfoI	GCGC	2 cut(s)	335, 430
Cfr13I	GGNCC	1 cut(s)	484
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	260, 349, 529, 548
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	2 cut(s)	71, 569
EarI	CTCTTC	2 cut(s)	71, 569
Ecl136II	GAGCTC	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	347
Eco91I	GGTNACC	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	560
EcoRI	GAATTC	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	4 cut(s)	263, 352, 532, 551
FatI	CATG	4 cut(s)	259, 348, 528, 547
FauI	CCCGC	2 cut(s)	477, 495
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	25, 249, 302
FokI	GGATG	2 cut(s)	47, 66
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	3 cut(s)	25, 249, 302
FspBI	CTAG	4 cut(s)	44, 227, 432, 474
GlaI	GCGC	2 cut(s)	334, 429
GluI	GCNGC	3 cut(s)	25, 249, 302
GsuI	CTGGAG	1 cut(s)	257
HaeII	RGCGCY	2 cut(s)	336, 431
HaeIII	GGCC	2 cut(s)	356, 546
HapII	CCGG	1 cut(s)	479
HhaI	GCGC	2 cut(s)	335, 430
Hin1II	CATG	4 cut(s)	263, 352, 532, 551
Hin6I	GCGC	2 cut(s)	333, 428
HinP1I	GCGC	2 cut(s)	333, 428
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	2 cut(s)	117, 153
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	2 cut(s)	163, 554
Hpy166II	GTNNAC	3 cut(s)	130, 213, 484
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	3 cut(s)	130, 213, 484
HpyAV	CCTTC	2 cut(s)	178, 413
HpyCH4III	ACNGT	2 cut(s)	341, 404
HpyCH4V	TGCA	3 cut(s)	27, 248, 352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 320, 434
Hsp92II	CATG	4 cut(s)	263, 352, 532, 551
HspAI	GCGC	2 cut(s)	333, 428
Kzo9I	GATC	1 cut(s)	498
LguI	GCTCTTC	1 cut(s)	569
Lsp1109I	GCAGC	2 cut(s)	11, 260
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	4 cut(s)	44, 227, 432, 474
MaeIII	GTNAC	2 cut(s)	538, 560
MalI	GATC	1 cut(s)	500
MboI	GATC	1 cut(s)	498
MboII	GAAGA	6 cut(s)	26, 29, 58, 353, 425, 586
MflI	RGATCY	1 cut(s)	498
MhlI	GDGCHC	2 cut(s)	439, 581
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	2 cut(s)	453, 516
MluNI	TGGCCA	1 cut(s)	546
MnlI	CCTC	5 cut(s)	51, 59, 74, 136, 361
Mox20I	TGGCCA	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	2 cut(s)	527, 533
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	3 cut(s)	197, 447, 490
MspI	CCGG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	250
MwoI	GCNNNNNNNGC	3 cut(s)	203, 320, 434
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	1 cut(s)	498
NlaIII	CATG	4 cut(s)	263, 352, 532, 551
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	2 cut(s)	538, 560
NspI	RCATGY	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	117, 153
PflFI	GACNNNGTC	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	26, 250, 303
Psp124BI	GAGCTC	1 cut(s)	439
PspEI	GGTNACC	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	498
PsyI	GACNNNGTC	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	447
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	2 cut(s)	527, 533
SacI	GAGCTC	1 cut(s)	439
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	3 cut(s)	25, 249, 302
Sau3AI	GATC	1 cut(s)	498
Sau96I	GGNCC	1 cut(s)	484
SduI	GDGCHC	2 cut(s)	439, 581
SetI	ASST	5 cut(s)	170, 279, 424, 439, 449
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	484
SmiMI	CAYNNNNRTG	2 cut(s)	527, 533
SmlI	CTYRAG	2 cut(s)	88, 438
SmoI	CTYRAG	2 cut(s)	88, 438
Sse9I	AATT	2 cut(s)	453, 516
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	5 cut(s)	197, 302, 371, 470, 488
SspMI	CTAG	4 cut(s)	44, 227, 432, 474
SstI	GAGCTC	1 cut(s)	439
StuI	AGGCCT	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	341, 404
TaqI	TCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	453, 516
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	2 cut(s)	117, 153
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	538, 560
TseI	GCWGC	2 cut(s)	24, 248
Tsp45I	GTSAC	2 cut(s)	538, 560
TspDTI	ATGAA	5 cut(s)	49, 432, 451, 564, 587
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	547
Tth111I	GACNNNGTC	1 cut(s)	125
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	484
XapI	RAATTY	1 cut(s)	516
XceI	RCATGY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	4 cut(s)	44, 227, 432, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.