Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009487

Physical Location & Seq

Genomic Coordinates Reverse (-)

27791010 .. 27791534

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G309300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCTATTGGTTCTCTTCTTCCTCGTGATCAATATCACCCCATCTTTGGCTCAAGACACCCAACAACTGATCGATCATATTTGCAGGCAGATGGAGGAGTTTGGGTTTTGCAGCCAAACTTTCAAGGAGAATTTGAAGTCTCCAAACGCTGATATTGTTGCCCTCACCCAAATAACCATAGAGCGCGCTACAGACAATGCCACCAAGACACACGACTTTATCAGGCAGGTGCTTGACAACACAAACGACCCAGCACTGAAAAATGCCCTCAGAGAATGTGAGAATGCTTACCGTGTGCTGATGGAGTCGTTTGACTCGGCTGCGCTGTCATTTTTCCAGAAGGATTACGACAGTGTGCAGAGGTATGAGACTGTGACACCGAGGGCTGAGGCCAGCTGCGAAGACTCACTCAGCACACCGCCTAACACTCAGAACCCTCTTACTAATAAAAATAGGCAGATGAGGATTTTGATTGCTATGGCTTTGGTTTCTTTGCATGACCTAATGGCTACCCAGCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

175

Amino Acids

19.8

Weight (kDa)

5.01

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09360 AT1G09370
fragaria_vesca	FvH4_6g07980 FvH4_6g08020
malus_domestica	MD12G1203300.v1.1 MD12G1203400.v1.1 MD12G1203500.v1.1
prunus_persica	Prupe.1G205300_v2.0.a1 Prupe.6G195000_v2.0.a1 Prupe.6G309200_v2.0.a1 Prupe.6G309300_v2.0.a1
pyrus_communis	pycom12g19010
rosa_chinensis	RchiOBHm_Chr3g0457691
rosa_laevigata	RLG00000025195
rosa_multiflora	Rmu_sc0007395.1_g000004
rosa_roxburghii	Rroxscaffold_6G00421570
rosa_rugosa	Rorug03G0022600
rosa_samantha	Rh3AG083300 Rh3BG085800 Rh3CG086100 Rh3DG086700
rosa_wichuraiana	Rw3G007130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	217
AccII	CGCG	1 cut(s)	186
AciI	CCGC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	2 cut(s)	124, 136
AluBI	AGCT	1 cut(s)	396
AluI	AGCT	1 cut(s)	396
Alw26I	GTCTC	2 cut(s)	144, 362
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	111, 320, 396
ApoI	RAATTY	1 cut(s)	130
AspLEI	GCGC	3 cut(s)	186, 188, 325
AsuHPI	GGTGA	2 cut(s)	28, 157
BauI	CACGAG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	408
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	123, 307, 383
BccI	CCATC	3 cut(s)	49, 85, 295
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	144, 362
BfaI	CTAG	1 cut(s)	523
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	3 cut(s)	112, 321, 397
BlsI	GCNGC	3 cut(s)	113, 322, 398
BpiI	GAAGAC	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	36
Bsa29I	ATCGAT	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse8I	GATNNNNATC	1 cut(s)	32
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	380
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	4 cut(s)	283, 378, 424, 443
BsePI	GCGCGC	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	3 cut(s)	123, 307, 383
BseYI	CCCAGC	2 cut(s)	250, 513
BsgI	GTGCAG	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	2 cut(s)	144, 362
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	392
Bsp143I	GATC	3 cut(s)	27, 69, 73
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	4 cut(s)	282, 379, 423, 442
BspDI	ATCGAT	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	380
BssHII	GCGCGC	1 cut(s)	184
BssMI	GATC	3 cut(s)	27, 69, 73
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst4CI	ACNGT	3 cut(s)	293, 353, 373
Bst6I	CTCTTC	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	86, 186, 394
BstDEI	CTNAG	4 cut(s)	269, 387, 410, 429
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	3 cut(s)	186, 188, 325
BstKTI	GATC	3 cut(s)	30, 72, 76
BstMAI	GTCTC	2 cut(s)	144, 362
BstMBI	GATC	3 cut(s)	27, 69, 73
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	3 cut(s)	123, 307, 383
BstV2I	GAAGAC	1 cut(s)	408
Bsu15I	ATCGAT	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	254, 358
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	3 cut(s)	86, 186, 394
CfoI	GCGC	3 cut(s)	186, 188, 325
ClaI	ATCGAT	1 cut(s)	72
CviAII	CATG	1 cut(s)	497
CviJI	RGCY	8 cut(s)	50, 114, 320, 386, 392, 396, 482, 509
CviKI_1	RGCY	8 cut(s)	50, 114, 320, 386, 392, 396, 482, 509
DdeI	CTNAG	4 cut(s)	269, 387, 410, 429
DpnI	GATC	3 cut(s)	29, 71, 75
DpnII	GATC	3 cut(s)	27, 69, 73
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	500
FaiI	YATR	5 cut(s)	78, 179, 366, 479, 498
FatI	CATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	112, 321, 397
Fsp4HI	GCNGC	3 cut(s)	112, 321, 397
FspBI	CTAG	1 cut(s)	523
GlaI	GCGC	3 cut(s)	185, 187, 324
GluI	GCNGC	3 cut(s)	112, 321, 397
GsaI	CCCAGC	2 cut(s)	254, 517
HaeIII	GGCC	1 cut(s)	392
HhaI	GCGC	3 cut(s)	186, 188, 325
Hin1II	CATG	1 cut(s)	500
Hin6I	GCGC	3 cut(s)	184, 186, 323
HinP1I	GCGC	3 cut(s)	184, 186, 323
HinfI	GANTC	3 cut(s)	305, 314, 404
HphI	GGTGA	2 cut(s)	28, 157
Hpy188I	TCNGA	2 cut(s)	272, 432
Hpy188III	TCNNGA	3 cut(s)	25, 53, 337
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	3 cut(s)	293, 353, 373
HpyCH4V	TGCA	4 cut(s)	84, 111, 358, 496
HpyF3I	CTNAG	4 cut(s)	269, 387, 410, 429
Hsp92II	CATG	1 cut(s)	500
HspAI	GCGC	3 cut(s)	184, 186, 323
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	27, 69, 73
LpnPI	CCDG	6 cut(s)	70, 208, 212, 264, 350, 406
Lsp1109I	GCAGC	3 cut(s)	123, 307, 383
MaeI	CTAG	1 cut(s)	523
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	29, 71, 75
MboI	GATC	3 cut(s)	27, 69, 73
MboII	GAAGA	3 cut(s)	7, 10, 413
MluCI	AATT	1 cut(s)	130
MlyI	GAGTC	3 cut(s)	308, 314, 398
MnlI	CCTC	9 cut(s)	32, 88, 173, 278, 354, 375, 382, 447, 456
MspA1I	CMGCKG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	289
MvnI	CGCG	1 cut(s)	186
NdeII	GATC	3 cut(s)	27, 69, 73
NlaIII	CATG	1 cut(s)	500
NmeAIII	GCCGAG	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	373
PaqCI	CACCTGC	1 cut(s)	217
PauI	GCGCGC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	289
PkrI	GCNGC	3 cut(s)	113, 322, 398
PleI	GAGTC	3 cut(s)	308, 313, 398
PpsI	GAGTC	3 cut(s)	308, 313, 398
PspFI	CCCAGC	2 cut(s)	250, 513
PteI	GCGCGC	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	396
SatI	GCNGC	3 cut(s)	112, 321, 397
Sau3AI	GATC	3 cut(s)	27, 69, 73
SchI	GAGTC	3 cut(s)	308, 314, 398
SetI	ASST	4 cut(s)	231, 365, 398, 504
SfcI	CTRYAG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	1 cut(s)	523
TaaI	ACNGT	3 cut(s)	293, 353, 373
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	130
TscAI	CASTG	2 cut(s)	261, 358
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	3 cut(s)	111, 320, 396
Tsp45I	GTSAC	1 cut(s)	373
TspRI	CASTG	2 cut(s)	261, 358
XapI	RAATTY	1 cut(s)	130
XspI	CTAG	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.