Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009383

Physical Location & Seq

Genomic Coordinates Forward (+)

23666752 .. 23668620

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G222600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCAGGTGTGTCTCTTGCTGTGGCTCCTAGAACGGAGCCTGATACAACAACTACAAAACCCGGATCTAACTCGCAAGAGAAACCGCAGCACCGTCAACAACAGCAGGCTGCTGTTGGCGGTGTCATGGGCTCATTGCGGGTAATTGAGCTCCAACTCGTGGCTTTCATCATGGTCTTCTCAGCCAGTGGCCTTGTCCCGCTCTTTGATTTGATCTTCCCTGCTTTTGCCTCTGCCTATCTCTTAGCCCTGTCTCGCCTGGCCTTCCCGGCACACGGCACCGTCACTTCCAGCTCTCAGGAGATTTTCCAAGGCAGCAGATTCTTCAGGGTCTATGTGATCGTGGGCACCACAACTGGGCTCTTCTTGCCGCTTGCATATGTGCTGGGTGGCTTTGCAAGGGGTGACGAACATGCTGTGCGCTCTGCAACACCCCACTTGTTCTTGCTCTCGTTTCAGATTCTGACTGAGAATGTGATCAGCGGGCTGTCGCTGTTTTCGCCGCCGGTGAGAGCTTTGGTCCCATTACTTTACACTGTCAGGAGAATCTTTGTCATCCTCGATTGGACCAGAGATGTTTGGCTCAACAAAACCCTGCCTGCCAATGCACAGCTCAAGGACACTGCATGGTTTTGGTTTGGGAGGACCTTGGCCATAGCCAATTTCCTATATTTCTCCATCAACCTGTTCGGGTTTTTGATCCCTCGGTTCCTTCCGAGGGCGTTCGAGAGGTACTTCAAGGAGAGGGATGAAGTTCATGCCAAGATGGCAGAAGACAAGCGCTCTGAAGCAGCTGCAAATAAATCAGAACCAGTTTCAGATAAGAAAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

30.88

Weight (kDa)

9.77

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27990
fragaria_vesca	FvH4_4g23410 FvH4_4g23410 FvH4_4g23410 FvH4_4g23410
malus_domestica	MD13G1122600.v1.1 MD16G1123100.v1.1
prunus_persica	Prupe.1G222600_v2.0.a1 Prupe.1G222600_v2.0.a1 Prupe.1G222600_v2.0.a1
pyrus_communis	pycom16g10520
rosa_chinensis	RchiOBHm_Chr4g0429781
rosa_laevigata	RLG00000007043
rosa_multiflora	Rmu_sc0001935.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371560
rosa_rugosa	Rorug04G0237900 Rorug04G0238000 Rorug04G0238100 Rorug04G0238200 Rorug04G0238300
rosa_samantha	Rh4CG316000
rosa_wichuraiana	Rw4G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	278, 347
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	7 cut(s)	86, 120, 139, 200, 371, 483, 503
AclWI	GGATC	2 cut(s)	73, 694
AcoI	YGGCCR	1 cut(s)	651
AcuI	CTGAAG	2 cut(s)	310, 807
AfaI	GTAC	1 cut(s)	734
AfeI	AGCGCT	1 cut(s)	782
AfiI	CCNNNNNNNGG	4 cut(s)	160, 275, 357, 718
AgsI	TTSAA	1 cut(s)	739
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	6 cut(s)	151, 294, 515, 613, 794, 830
AluI	AGCT	6 cut(s)	151, 294, 515, 613, 794, 830
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	18, 258
AlwI	GGATC	2 cut(s)	73, 694
AlwNI	CAGNNNCTG	1 cut(s)	463
Aor51HI	AGCGCT	1 cut(s)	782
AoxI	GGCC	3 cut(s)	190, 261, 651
ApeKI	GCWGC	6 cut(s)	88, 110, 315, 791, 794, 830
AspLEI	GCGC	2 cut(s)	423, 783
AspS9I	GGNCC	3 cut(s)	520, 567, 645
AsuC2I	CCSGG	2 cut(s)	63, 269
AsuHPI	GGTGA	2 cut(s)	416, 520
AvaII	GGWCC	3 cut(s)	520, 567, 645
BaeGI	GKGCMC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	653
BanI	GGYRCC	2 cut(s)	278, 347
BanII	GRGCYC	3 cut(s)	134, 153, 363
BauI	CACGAG	1 cut(s)	158
BbsI	GAAGAC	2 cut(s)	169, 780
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	6 cut(s)	97, 100, 327, 781, 803, 817
BccI	CCATC	2 cut(s)	686, 760
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	1 cut(s)	477
BcnI	CCSGG	2 cut(s)	63, 269
BcoDI	GTCTC	2 cut(s)	18, 258
BfaI	CTAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	784
BglI	GCCNNNNNGGC	2 cut(s)	269, 767
BisI	GCNGC	8 cut(s)	89, 111, 316, 371, 503, 792, 795, 831
BlsI	GCNGC	8 cut(s)	90, 112, 317, 372, 504, 793, 796, 832
Bme1390I	CCNGG	3 cut(s)	63, 260, 269
Bme18I	GGWCC	3 cut(s)	520, 567, 645
BmgT120I	GGNCC	3 cut(s)	520, 567, 645
BmiI	GGNNCC	6 cut(s)	27, 39, 280, 349, 522, 710
BmrFI	CCNGG	3 cut(s)	63, 260, 269
BmrI	ACTGGG	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	366
BpiI	GAAGAC	2 cut(s)	169, 780
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	63, 269
BsaJI	CCNNGG	4 cut(s)	310, 648, 704, 716
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 275, 357, 718
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	3 cut(s)	186, 361, 812
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	4 cut(s)	310, 648, 704, 716
BseGI	GGATG	2 cut(s)	555, 754
BseLI	CCNNNNNNNGG	4 cut(s)	160, 275, 357, 718
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	3 cut(s)	195, 311, 459
BseNI	ACTGG	3 cut(s)	186, 361, 812
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	6 cut(s)	97, 100, 327, 781, 803, 817
BseYI	CCCAGC	1 cut(s)	385
BshFI	GGCC	3 cut(s)	192, 263, 653
BshNI	GGYRCC	2 cut(s)	278, 347
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	63, 269, 506
BslFI	GGGAC	2 cut(s)	182, 506
BslI	CCNNNNNNNGG	4 cut(s)	160, 275, 357, 718
BsmAI	GTCTC	2 cut(s)	18, 258
BsmFI	GGGAC	2 cut(s)	182, 506
BsnI	GGCC	3 cut(s)	192, 263, 653
Bsp1286I	GDGCHC	4 cut(s)	134, 153, 350, 363
Bsp143I	GATC	5 cut(s)	65, 213, 339, 477, 699
BspACI	CCGC	7 cut(s)	86, 120, 139, 200, 371, 483, 503
BspANI	GGCC	3 cut(s)	192, 263, 653
BspCNI	CTCAG	3 cut(s)	194, 310, 460
BspLI	GGNNCC	6 cut(s)	27, 39, 280, 349, 522, 710
BspPI	GGATC	2 cut(s)	73, 694
BspQI	GCTCTTC	1 cut(s)	368
BspT107I	GGYRCC	2 cut(s)	278, 347
BsrBI	CCGCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	505
BsrI	ACTGG	3 cut(s)	186, 361, 812
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	4 cut(s)	310, 648, 704, 716
BssMI	GATC	5 cut(s)	65, 213, 339, 477, 699
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	310, 648
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	95, 283, 538
Bst6I	CTCTTC	1 cut(s)	368
BstC8I	GCNNGC	4 cut(s)	108, 375, 485, 600
BstDEI	CTNAG	4 cut(s)	181, 244, 297, 468
BstF5I	GGATG	2 cut(s)	555, 754
BstH2I	RGCGCY	1 cut(s)	784
BstHHI	GCGC	2 cut(s)	423, 783
BstKTI	GATC	5 cut(s)	68, 216, 342, 480, 702
BstMAI	GTCTC	2 cut(s)	18, 258
BstMBI	GATC	5 cut(s)	65, 213, 339, 477, 699
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 367, 499, 767
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	3 cut(s)	61, 258, 267
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	6 cut(s)	97, 100, 327, 781, 803, 817
BstV2I	GAAGAC	2 cut(s)	169, 780
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	3 cut(s)	192, 263, 653
BtsCI	GGATG	2 cut(s)	555, 754
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	3 cut(s)	193, 534, 621
Cac8I	GCNNGC	4 cut(s)	108, 375, 485, 600
CaiI	CAGNNNCTG	1 cut(s)	463
CfoI	GCGC	2 cut(s)	423, 783
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	3 cut(s)	520, 567, 645
Csp6I	GTAC	1 cut(s)	733
CviAII	CATG	5 cut(s)	127, 172, 413, 627, 758
CviQI	GTAC	1 cut(s)	733
DdeI	CTNAG	4 cut(s)	181, 244, 297, 468
DpnI	GATC	5 cut(s)	67, 215, 341, 479, 701
DpnII	GATC	5 cut(s)	65, 213, 339, 477, 699
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	310, 648
Eco24I	GRGCYC	3 cut(s)	134, 153, 363
Eco47I	GGWCC	3 cut(s)	520, 567, 645
Eco47III	AGCGCT	1 cut(s)	782
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	310, 807
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	2 cut(s)	310, 648
EcoT38I	GRGCYC	3 cut(s)	134, 153, 363
ErhI	CCWWGG	2 cut(s)	310, 648
FaeI	CATG	5 cut(s)	130, 175, 416, 630, 761
FaqI	GGGAC	2 cut(s)	182, 506
FatI	CATG	5 cut(s)	126, 171, 412, 626, 757
FauI	CCCGC	3 cut(s)	132, 207, 476
FauNDI	CATATG	1 cut(s)	379
FbaI	TGATCA	1 cut(s)	477
Fnu4HI	GCNGC	8 cut(s)	89, 111, 316, 371, 503, 792, 795, 831
FokI	GGATG	2 cut(s)	542, 761
FriOI	GRGCYC	3 cut(s)	134, 153, 363
Fsp4HI	GCNGC	8 cut(s)	89, 111, 316, 371, 503, 792, 795, 831
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	2 cut(s)	422, 782
GluI	GCNGC	8 cut(s)	89, 111, 316, 371, 503, 792, 795, 831
GsaI	CCCAGC	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	784
HaeIII	GGCC	3 cut(s)	192, 263, 653
HapII	CCGG	3 cut(s)	63, 269, 506
HhaI	GCGC	2 cut(s)	423, 783
Hin1II	CATG	5 cut(s)	130, 175, 416, 630, 761
Hin6I	GCGC	2 cut(s)	421, 781
HinP1I	GCGC	2 cut(s)	421, 781
HincII	GTYRAC	1 cut(s)	98
HindII	GTYRAC	1 cut(s)	98
HinfI	GANTC	3 cut(s)	321, 460, 546
HpaII	CCGG	3 cut(s)	63, 269, 506
HphI	GGTGA	2 cut(s)	416, 520
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	6 cut(s)	459, 465, 717, 787, 808, 820
Hpy188III	TCNNGA	3 cut(s)	299, 541, 727
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	274, 722
HpyCH4III	ACNGT	3 cut(s)	95, 283, 538
HpyCH4V	TGCA	6 cut(s)	377, 398, 428, 608, 626, 797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 367, 499, 767
HpyF3I	CTNAG	4 cut(s)	181, 244, 297, 468
Hsp92II	CATG	5 cut(s)	130, 175, 416, 630, 761
HspAI	GCGC	2 cut(s)	421, 781
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	5 cut(s)	65, 213, 339, 477, 699
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	3 cut(s)	31, 37, 156
Lsp1109I	GCAGC	6 cut(s)	97, 100, 327, 781, 803, 817
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	283, 404
MalI	GATC	5 cut(s)	67, 215, 341, 479, 701
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	5 cut(s)	65, 213, 339, 477, 699
MboII	GAAGA	5 cut(s)	169, 208, 316, 355, 785
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	4 cut(s)	134, 153, 350, 363
MlsI	TGGCCA	1 cut(s)	653
MluCI	AATT	2 cut(s)	144, 661
MluNI	TGGCCA	1 cut(s)	653
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	7 cut(s)	241, 569, 636, 711, 714, 723, 738
Mox20I	TGGCCA	1 cut(s)	653
MscI	TGGCCA	1 cut(s)	653
Msp20I	TGGCCA	1 cut(s)	653
MspA1I	CMGCKG	2 cut(s)	483, 794
MspI	CCGG	3 cut(s)	63, 269, 506
MspR9I	CCNGG	3 cut(s)	63, 260, 269
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	4 cut(s)	269, 367, 499, 767
NciI	CCSGG	2 cut(s)	63, 269
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	5 cut(s)	65, 213, 339, 477, 699
NlaIII	CATG	5 cut(s)	130, 175, 416, 630, 761
NlaIV	GGNNCC	6 cut(s)	27, 39, 280, 349, 522, 710
NmuCI	GTSAC	2 cut(s)	283, 404
NspI	RCATGY	1 cut(s)	416
PciSI	GCTCTTC	1 cut(s)	368
PfeI	GAWTC	3 cut(s)	321, 460, 546
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	8 cut(s)	90, 112, 317, 372, 504, 793, 796, 832
PpuMI	RGGWCCY	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	6 cut(s)	27, 39, 280, 349, 522, 710
PspPI	GGNCC	3 cut(s)	520, 567, 645
PspPPI	RGGWCCY	1 cut(s)	645
PstNI	CAGNNNCTG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	1 cut(s)	734
RsaNI	GTAC	1 cut(s)	733
SacI	GAGCTC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	368
SatI	GCNGC	8 cut(s)	89, 111, 316, 371, 503, 792, 795, 831
Sau3AI	GATC	5 cut(s)	65, 213, 339, 477, 699
Sau96I	GGNCC	3 cut(s)	520, 567, 645
ScrFI	CCNGG	3 cut(s)	63, 260, 269
SduI	GDGCHC	4 cut(s)	134, 153, 350, 363
SgrAI	CRCCGGYG	1 cut(s)	505
SinI	GGWCC	3 cut(s)	520, 567, 645
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	2 cut(s)	144, 661
SsiI	CCGC	7 cut(s)	86, 120, 139, 200, 371, 483, 503
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	61, 258, 267
StyI	CCWWGG	2 cut(s)	310, 648
TaaI	ACNGT	3 cut(s)	95, 283, 538
TaqI	TCGA	2 cut(s)	561, 726
TasI	AATT	2 cut(s)	144, 661
TauI	GCSGC	2 cut(s)	373, 505
TfiI	GAWTC	3 cut(s)	321, 460, 546
TscAI	CASTG	3 cut(s)	193, 541, 628
TseFI	GTSAC	2 cut(s)	283, 404
TseI	GCWGC	6 cut(s)	88, 110, 315, 791, 794, 830
Tsp45I	GTSAC	2 cut(s)	283, 404
TspDTI	ATGAA	3 cut(s)	157, 746, 765
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	3 cut(s)	193, 541, 628
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	3 cut(s)	520, 567, 645
XceI	RCATGY	1 cut(s)	416
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.