Rorug04G0238000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009383
Physical Location & Seq
Forward (+)
40440454 .. 40440922
469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0238000.1

Sequence Viewer

Length: 345 bp
ATGGATGAAGATGAATGGTCTAGTTGGAACAAAATAGGTGATATCGTGCTTCATATTGAGCTACCTCGTTGGGCTGATATCATGGTTATTGCCCCATTATCAGCAAACACCCTAGCCAAGATTGCCGGCGGTTTTTGTGACAACCTACTCACCTGTGTTGTGCGAGCATGGGACTACAACAAGCCTTTGTTTGTTGCACCAGCCATGAACACCTTGATGTGGAAGAATCCCTTCACAGAGCGACATCTCATGTCCATTGATGAACTTGGACACTCATCCCACCTGTCTCGAAGAGGCTGGCTTGTGGGGATTACGGGAATGGTGCAATGGCTGAGTCTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.98

Weight (kDa)

5.7

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Flavoprotein PF02441 16 - 86 1.3e-19 Flavoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 219
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 50, 142
BbsI GAAGAC 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 2 cut(s) 21, 113
BpiI GAAGAC 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse118I RCCGGY 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 332
BseGI GGATG 2 cut(s) 10, 275
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 185
BspACI CCGC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 286
BstC8I GCNNGC 3 cut(s) 127, 165, 299
BstDEI CTNAG 1 cut(s) 332
BstF5I GGATG 2 cut(s) 10, 275
BstMAI GTCTC 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 329
BtsCI GGATG 2 cut(s) 10, 275
Cac8I GCNNGC 3 cut(s) 127, 165, 299
Cfr10I RCCGGY 1 cut(s) 125
CviAII CATG 4 cut(s) 82, 168, 205, 250
CviJI RGCY 8 cut(s) 61, 74, 116, 184, 203, 297, 301, 331
CviKI_1 RGCY 8 cut(s) 61, 74, 116, 184, 203, 297, 301, 331
DdeI CTNAG 1 cut(s) 332
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco32I GATATC 2 cut(s) 43, 79
EcoRV GATATC 2 cut(s) 43, 79
FaeI CATG 4 cut(s) 85, 171, 208, 253
FaiI YATR 5 cut(s) 54, 83, 169, 206, 251
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FaqI GGGAC 1 cut(s) 185
FatI CATG 4 cut(s) 81, 167, 204, 249
FokI GGATG 2 cut(s) 17, 262
FspBI CTAG 2 cut(s) 21, 113
HapII CCGG 1 cut(s) 126
Hin1II CATG 4 cut(s) 85, 171, 208, 253
HinfI GANTC 2 cut(s) 226, 334
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 50, 142
Hpy188III TCNNGA 1 cut(s) 288
HpyAV CCTTC 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 197, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 4 cut(s) 85, 171, 208, 253
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
LpnPI CCDG 5 cut(s) 139, 166, 213, 283, 296
MaeI CTAG 2 cut(s) 21, 113
MaeIII GTNAC 1 cut(s) 137
MboII GAAGA 4 cut(s) 20, 235, 303, 329
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 2 cut(s) 75, 287
MroNI GCCGGC 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 230
MslI CAYNNNNRTG 1 cut(s) 215
MspI CCGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 122
NaeI GCCGGC 1 cut(s) 127
NgoMIV GCCGGC 1 cut(s) 125
NlaIII CATG 4 cut(s) 85, 171, 208, 253
NmuCI GTSAC 1 cut(s) 137
PdiI GCCGGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 226
PleI GAGTC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 342
RseI CAYNNNNRTG 1 cut(s) 215
SchI GAGTC 1 cut(s) 343
SetI ASST 7 cut(s) 40, 63, 67, 147, 155, 215, 285
SmiMI CAYNNNNRTG 1 cut(s) 215
SsiI CCGC 1 cut(s) 129
SspMI CTAG 2 cut(s) 21, 113
TaqI TCGA 1 cut(s) 289
TfiI GAWTC 1 cut(s) 226
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 5 cut(s) 21, 27, 41, 221, 276
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 2 cut(s) 21, 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.