Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009383

Physical Location & Seq

Genomic Coordinates Reverse (-)

7201702 .. 7202816

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCAGGTGTGTCCCTTGCTGTGGCTCCTAGATCAGAGCCCGACACAACCACTACAGCCCCTGGATCCAAACCCCAAGACAAACCGCTCCACCGCCAACAGCACCAGCAGCCTGCTGTTGGCGGTGTAATGGGCTCATTGCGAGTAATAGAGCTCCAACTCGTGGCCTTCATCATGGTTTTCTCAGTCAGCGGCCTTGTCCCGCTTTTTGATTTGATCTTCCCGGCCTTTGCCTCAGCATATCTCTTGGCTCTGTCGCGCTTGGCCTTCCCTTCTCATGGTCCCGTCAGCTCTAGCTCTCGGGAGATTTTCCAAGGCAGCAGATTCTTCAGGTTTTACGTGGTTGCGGGAACCACAATCGGGCTCTTCTTGCCGCTTGCATACGTATTGGGTGGCTTTGCGCGGGGCGATGAGCACGCCGTCCGCTCGGCAACGCCTCACTTGTTCTTGCTCTCGTTTCAGATTCTCACTGAGAATGTGATTAGCGGGTTGTCGCTGTTTTCTCCGCCGGTGAGGGCATTGGTCCCATTGCTTTACACTGTCAGGAGAATCTTTGTCATCCTTGATTGGATGAAAGATGTTTGGCTTAACAAAACTCTGCCAGCCAATGCACAGTTTAAGGATGTTGCATGGTTTTGGTTTGGGAGGAGCCTGGCTGTAGCCAACTTCATATATTTCTCGATCAACCTATTCGGGTTTTTGATTCCTCGATTCCTTCCGAGGGCGTTTGAGAGATACTTCAAGGAGAGGGATGAACTTGAGTCCAAGAGTGTAGAGGACAAGCGCTCCGCAGCAGCAAATAAGTTGGAACCAGTTGCAGATAAGAAAAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

30.99

Weight (kDa)

9.73

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27990
fragaria_vesca	FvH4_4g23410 FvH4_4g23410 FvH4_4g23410 FvH4_4g23410
malus_domestica	MD13G1122600.v1.1 MD16G1123100.v1.1
prunus_persica	Prupe.1G222600_v2.0.a1 Prupe.1G222600_v2.0.a1 Prupe.1G222600_v2.0.a1
pyrus_communis	pycom16g10520
rosa_chinensis	RchiOBHm_Chr4g0429781
rosa_laevigata	RLG00000007043
rosa_multiflora	Rmu_sc0001935.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371560
rosa_rugosa	Rorug04G0237900 Rorug04G0238000 Rorug04G0238100 Rorug04G0238200 Rorug04G0238300
rosa_samantha	Rh4CG316000
rosa_wichuraiana	Rw4G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccBSI	CCGCTC	2 cut(s)	88, 426
AccII	CGCG	2 cut(s)	259, 403
AclWI	GGATC	2 cut(s)	60, 73
AcuI	CTGAAG	1 cut(s)	313
AfeI	AGCGCT	1 cut(s)	785
AfiI	CCNNNNNNNGG	6 cut(s)	22, 119, 163, 278, 360, 721
AgsI	TTSAA	1 cut(s)	742
AjnI	CCWGG	2 cut(s)	61, 651
AluBI	AGCT	3 cut(s)	154, 291, 297
AluI	AGCT	3 cut(s)	154, 291, 297
Alw21I	GWGCWC	2 cut(s)	156, 417
AlwI	GGATC	2 cut(s)	60, 73
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	300
Aor51HI	AGCGCT	1 cut(s)	785
AoxI	GGCC	4 cut(s)	165, 193, 225, 264
ApeKI	GCWGC	4 cut(s)	109, 318, 791, 794
AspLEI	GCGC	3 cut(s)	261, 403, 786
AspS9I	GGNCC	2 cut(s)	281, 523
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	523
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	2 cut(s)	281, 523
BamHI	GGATCC	1 cut(s)	65
BanII	GRGCYC	4 cut(s)	42, 137, 156, 366
BauI	CACGAG	1 cut(s)	161
Bbv12I	GWGCWC	2 cut(s)	156, 417
BbvCI	CCTCAGC	1 cut(s)	235
BbvI	GCAGC	4 cut(s)	121, 330, 803, 806
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	2 cut(s)	63, 653
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	2 cut(s)	30, 294
BfmI	CTRYAG	2 cut(s)	54, 657
BfoI	RGCGCY	1 cut(s)	787
BisI	GCNGC	6 cut(s)	110, 193, 319, 374, 792, 795
BlsI	GCNGC	6 cut(s)	111, 194, 320, 375, 793, 796
Bme1390I	CCNGG	3 cut(s)	63, 224, 653
Bme18I	GGWCC	2 cut(s)	281, 523
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	281, 523
BmiI	GGNNCC	7 cut(s)	27, 67, 283, 352, 525, 650, 810
BmrFI	CCNGG	3 cut(s)	63, 224, 653
Bpu10I	CCTNAGC	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	779
BpuMI	CCSGG	1 cut(s)	224
BsaAI	YACGTR	2 cut(s)	340, 385
BsaJI	CCNNGG	3 cut(s)	61, 313, 719
BsaXI	ACNNNNNCTCC	2 cut(s)	770, 800
Bsc4I	CCNNNNNNNGG	6 cut(s)	22, 119, 163, 278, 360, 721
Bse118I	RCCGGY	1 cut(s)	508
Bse1I	ACTGG	1 cut(s)	812
Bse3DI	GCAATG	2 cut(s)	137, 527
BseBI	CCWGG	2 cut(s)	63, 653
BseDI	CCNNGG	3 cut(s)	61, 313, 719
BseGI	GGATG	4 cut(s)	558, 576, 628, 757
BseLI	CCNNNNNNNGG	6 cut(s)	22, 119, 163, 278, 360, 721
BseMI	GCAATG	2 cut(s)	137, 527
BseMII	CTCAG	3 cut(s)	198, 249, 462
BseNI	ACTGG	1 cut(s)	812
BseRI	GAGGAG	1 cut(s)	661
BseXI	GCAGC	4 cut(s)	121, 330, 803, 806
Bsh1236I	CGCG	2 cut(s)	259, 403
BshFI	GGCC	4 cut(s)	167, 195, 227, 266
BsiHKAI	GWGCWC	2 cut(s)	156, 417
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	224, 509
BslFI	GGGAC	3 cut(s)	185, 267, 509
BslI	CCNNNNNNNGG	6 cut(s)	22, 119, 163, 278, 360, 721
BsmFI	GGGAC	3 cut(s)	185, 267, 509
BsnI	GGCC	4 cut(s)	167, 195, 227, 266
BsoBI	CYCGRG	1 cut(s)	300
Bsp1286I	GDGCHC	5 cut(s)	42, 137, 156, 366, 417
Bsp143I	GATC	4 cut(s)	32, 65, 216, 681
BspANI	GGCC	4 cut(s)	167, 195, 227, 266
BspCNI	CTCAG	3 cut(s)	197, 248, 463
BspFNI	CGCG	2 cut(s)	259, 403
BspLI	GGNNCC	7 cut(s)	27, 67, 283, 352, 525, 650, 810
BspPI	GGATC	2 cut(s)	60, 73
BspQI	GCTCTTC	1 cut(s)	371
BsrBI	CCGCTC	2 cut(s)	88, 426
BsrDI	GCAATG	2 cut(s)	137, 527
BsrFI	RCCGGY	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	812
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	3 cut(s)	61, 313, 719
BssMI	GATC	4 cut(s)	32, 65, 216, 681
BssSI	CACGAG	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	313
Bst2BI	CACGAG	1 cut(s)	161
Bst2UI	CCWGG	2 cut(s)	63, 653
Bst4CI	ACNGT	2 cut(s)	541, 615
Bst6I	CTCTTC	1 cut(s)	371
BstBAI	YACGTR	2 cut(s)	340, 385
BstC8I	GCNNGC	4 cut(s)	114, 378, 417, 603
BstDEI	CTNAG	3 cut(s)	184, 235, 471
BstF5I	GGATG	4 cut(s)	558, 576, 628, 757
BstFNI	CGCG	2 cut(s)	259, 403
BstH2I	RGCGCY	1 cut(s)	787
BstHHI	GCGC	3 cut(s)	261, 403, 786
BstKTI	GATC	4 cut(s)	35, 68, 219, 684
BstMBI	GATC	4 cut(s)	32, 65, 216, 681
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 370
BstNI	CCWGG	2 cut(s)	63, 653
BstSCI	CCNGG	3 cut(s)	61, 222, 651
BstSFI	CTRYAG	2 cut(s)	54, 657
BstSNI	TACGTA	1 cut(s)	385
BstUI	CGCG	2 cut(s)	259, 403
BstV1I	GCAGC	4 cut(s)	121, 330, 803, 806
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	4 cut(s)	167, 195, 227, 266
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	4 cut(s)	558, 576, 628, 757
BtsIMutI	CAGTG	2 cut(s)	468, 537
Cac8I	GCNNGC	4 cut(s)	114, 378, 417, 603
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	3 cut(s)	261, 403, 786
Cfr10I	RCCGGY	1 cut(s)	508
Cfr13I	GGNCC	2 cut(s)	281, 523
CviAII	CATG	3 cut(s)	175, 278, 630
DdeI	CTNAG	3 cut(s)	184, 235, 471
DpnI	GATC	4 cut(s)	34, 67, 218, 683
DpnII	GATC	4 cut(s)	32, 65, 216, 681
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	1 cut(s)	495
Ecl136II	GAGCTC	1 cut(s)	154
Eco105I	TACGTA	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	4 cut(s)	42, 137, 156, 366
Eco47I	GGWCC	2 cut(s)	281, 523
Eco47III	AGCGCT	1 cut(s)	785
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	61, 651
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	4 cut(s)	42, 137, 156, 366
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	3 cut(s)	178, 281, 633
FaiI	YATR	7 cut(s)	176, 241, 279, 382, 631, 671, 673
FaqI	GGGAC	3 cut(s)	185, 267, 509
FatI	CATG	3 cut(s)	174, 277, 629
FauI	CCCGC	4 cut(s)	210, 340, 396, 479
Fnu4HI	GCNGC	6 cut(s)	110, 193, 319, 374, 792, 795
FokI	GGATG	4 cut(s)	545, 583, 635, 764
FriOI	GRGCYC	4 cut(s)	42, 137, 156, 366
Fsp4HI	GCNGC	6 cut(s)	110, 193, 319, 374, 792, 795
FspBI	CTAG	2 cut(s)	30, 294
GlaI	GCGC	3 cut(s)	260, 402, 785
GluI	GCNGC	6 cut(s)	110, 193, 319, 374, 792, 795
HaeII	RGCGCY	1 cut(s)	787
HaeIII	GGCC	4 cut(s)	167, 195, 227, 266
HapII	CCGG	2 cut(s)	224, 509
HhaI	GCGC	3 cut(s)	261, 403, 786
Hin1II	CATG	3 cut(s)	178, 281, 633
Hin6I	GCGC	3 cut(s)	259, 401, 784
HinP1I	GCGC	3 cut(s)	259, 401, 784
HinfI	GANTC	6 cut(s)	324, 463, 549, 703, 711, 761
HpaII	CCGG	2 cut(s)	224, 509
HphI	GGTGA	1 cut(s)	523
Hpy188I	TCNGA	3 cut(s)	37, 462, 720
Hpy188III	TCNNGA	3 cut(s)	302, 544, 679
HpyAV	CCTTC	4 cut(s)	178, 277, 282, 725
HpyCH4III	ACNGT	2 cut(s)	541, 615
HpyCH4IV	ACGT	2 cut(s)	339, 384
HpyCH4V	TGCA	4 cut(s)	380, 611, 629, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 370
HpyF3I	CTNAG	3 cut(s)	184, 235, 471
HpySE526I	ACGT	2 cut(s)	339, 384
Hsp92II	CATG	3 cut(s)	178, 281, 633
HspAI	GCGC	3 cut(s)	259, 401, 784
Kzo9I	GATC	4 cut(s)	32, 65, 216, 681
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	5 cut(s)	31, 93, 159, 648, 791
Lsp1109I	GCAGC	4 cut(s)	121, 330, 803, 806
MaeI	CTAG	2 cut(s)	30, 294
MaeII	ACGT	2 cut(s)	339, 384
MalI	GATC	4 cut(s)	34, 67, 218, 683
MbiI	CCGCTC	2 cut(s)	88, 426
MboI	GATC	4 cut(s)	32, 65, 216, 681
MboII	GAAGA	3 cut(s)	211, 319, 358
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	5 cut(s)	42, 137, 156, 366, 417
MlyI	GAGTC	1 cut(s)	770
MmeI	TCCRAC	2 cut(s)	181, 786
MnlI	CCTC	8 cut(s)	244, 447, 507, 639, 714, 717, 741, 769
MseI	TTAA	2 cut(s)	588, 618
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	2 cut(s)	224, 509
MspR9I	CCNGG	3 cut(s)	63, 224, 653
MvaI	CCWGG	2 cut(s)	63, 653
MvnI	CGCG	2 cut(s)	259, 403
MwoI	GCNNNNNNNGC	2 cut(s)	109, 370
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	4 cut(s)	32, 65, 216, 681
NlaIII	CATG	3 cut(s)	178, 281, 633
NlaIV	GGNNCC	7 cut(s)	27, 67, 283, 352, 525, 650, 810
NmeAIII	GCCGAG	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	371
PfeI	GAWTC	5 cut(s)	324, 463, 549, 703, 711
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	6 cut(s)	111, 194, 320, 375, 793, 796
PleI	GAGTC	1 cut(s)	769
PpsI	GAGTC	1 cut(s)	769
Ppu21I	YACGTR	2 cut(s)	340, 385
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	2 cut(s)	61, 651
PspGI	CCWGG	2 cut(s)	61, 651
PspN4I	GGNNCC	7 cut(s)	27, 67, 283, 352, 525, 650, 810
PspPI	GGNCC	2 cut(s)	281, 523
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	588, 618
SatI	GCNGC	6 cut(s)	110, 193, 319, 374, 792, 795
Sau3AI	GATC	4 cut(s)	32, 65, 216, 681
Sau96I	GGNCC	2 cut(s)	281, 523
SchI	GAGTC	1 cut(s)	770
ScrFI	CCNGG	3 cut(s)	63, 224, 653
SduI	GDGCHC	5 cut(s)	42, 137, 156, 366, 417
SetI	ASST	8 cut(s)	10, 156, 293, 299, 335, 342, 387, 690
SfcI	CTRYAG	2 cut(s)	54, 657
SgrAI	CRCCGGYG	1 cut(s)	508
SinI	GGWCC	2 cut(s)	281, 523
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
SnaBI	TACGTA	1 cut(s)	385
SspMI	CTAG	2 cut(s)	30, 294
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	3 cut(s)	61, 222, 651
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	541, 615
TaiI	ACGT	2 cut(s)	342, 387
TaqI	TCGA	2 cut(s)	680, 709
TauI	GCSGC	2 cut(s)	195, 376
TfiI	GAWTC	5 cut(s)	324, 463, 549, 703, 711
Tru1I	TTAA	2 cut(s)	588, 618
Tru9I	TTAA	2 cut(s)	588, 618
TscAI	CASTG	2 cut(s)	475, 544
TseI	GCWGC	4 cut(s)	109, 318, 791, 794
TspDTI	ATGAA	4 cut(s)	160, 587, 658, 768
TspRI	CASTG	2 cut(s)	475, 544
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	281, 523
XspI	CTAG	2 cut(s)	30, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.