Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001935.1

Orthogroup ID

OG0009383

Physical Location & Seq

Genomic Coordinates Reverse (-)

4035 .. 5211

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001935.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgtctggcgtatcggttgcagtggctcctaggtcggagcctgataaaactacaactgctggatcacaacaccaggaaaagccacatcgccaactgcaccaacagcggcagcagccagctgttggaggtgtcatggggtcattgcgcgtaatagagctccagctcgtggcattcatcatggtgttctctgccagtggcctcgtcccgctccttgatttgatcttccctgcttttgcctccgcctatctcttagtactgtcgcgcttggccttcccatcacatggtcatgtctcttctggcgcgcaggagattttccaaggaagcaaattctttaggctgtatgtgattgtgggaactacaattgggctgttcttgcctttggcctatgtgttgggtggttttgcaaggggtgatgagcacgctgtgcgctcagcaacacctcacttgttcttgctctcctttcagattctgactgaaaatgtcataagtgggttgtcactattttcgccaccagttagagcacttgttccgttgctttacacagttaggagaatctttgtcatccttgattggatgaaggatgtctggcttaacaagactctccctgcaaatgcacaattgaaggatgttgcatggttttggtttggaaggaccttggctgtggccaacttcttatatttctcgatcaatttgtttgggtttttgattcctcgatttcttccaagggcctttgagaggtactttagggagagggatgaagttcattccaagactgcagaggacaagcgctcagcagcggtaaataaatcgcaatcagctccagcagataagaaggccgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

31.19

Weight (kDa)

9.93

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27990
fragaria_vesca	FvH4_4g23410 FvH4_4g23410 FvH4_4g23410 FvH4_4g23410
malus_domestica	MD13G1122600.v1.1 MD16G1123100.v1.1
prunus_persica	Prupe.1G222600_v2.0.a1 Prupe.1G222600_v2.0.a1 Prupe.1G222600_v2.0.a1
pyrus_communis	pycom16g10520
rosa_chinensis	RchiOBHm_Chr4g0429781
rosa_laevigata	RLG00000007043
rosa_multiflora	Rmu_sc0001935.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371560
rosa_rugosa	Rorug04G0237900 Rorug04G0238000 Rorug04G0238100 Rorug04G0238200 Rorug04G0238300
rosa_samantha	Rh4CG316000
rosa_wichuraiana	Rw4G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	122, 166, 281
AccBSI	CCGCTC	1 cut(s)	208
AccII	CGCG	3 cut(s)	147, 262, 302
AciI	CCGC	4 cut(s)	106, 206, 240, 797
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	424
AfaI	GTAC	2 cut(s)	255, 740
AfeI	AGCGCT	1 cut(s)	788
AfiI	CCNNNNNNNGG	4 cut(s)	122, 166, 281, 735
AgsI	TTSAA	1 cut(s)	622
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	4 cut(s)	119, 157, 163, 818
AluI	AGCT	4 cut(s)	119, 157, 163, 818
Alw21I	GWGCWC	3 cut(s)	159, 420, 523
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	1 cut(s)	469
Aor51HI	AGCGCT	1 cut(s)	788
AoxI	GGCC	6 cut(s)	196, 267, 381, 663, 726, 834
ApeKI	GCWGC	3 cut(s)	109, 112, 794
ApoI	RAATTY	1 cut(s)	326
AspA2I	CCTAGG	1 cut(s)	29
AspLEI	GCGC	6 cut(s)	147, 264, 302, 304, 429, 789
AspS9I	GGNCC	2 cut(s)	651, 726
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	651
AvrII	CCTAGG	1 cut(s)	29
BalI	TGGCCA	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	164
Bbv12I	GWGCWC	3 cut(s)	159, 420, 523
BbvI	GCAGC	3 cut(s)	121, 124, 806
BccI	CCATC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	774
BfoI	RGCGCY	1 cut(s)	790
BisI	GCNGC	4 cut(s)	107, 110, 113, 795
BlnI	CCTAGG	1 cut(s)	29
BlpI	GCTNAGC	2 cut(s)	430, 790
BlsI	GCNGC	4 cut(s)	108, 111, 114, 796
BmcAI	AGTACT	1 cut(s)	255
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	651
BmgT120I	GGNCC	2 cut(s)	651, 726
BmiI	GGNNCC	2 cut(s)	27, 39
BmrFI	CCNGG	1 cut(s)	74
BpmI	CTGGAG	2 cut(s)	143, 804
Bpu1102I	GCTNAGC	2 cut(s)	430, 790
BsaJI	CCNNGG	4 cut(s)	29, 316, 654, 722
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 166, 281, 735
Bse1I	ACTGG	2 cut(s)	192, 512
Bse3DI	GCAATG	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	4 cut(s)	29, 316, 654, 722
BseGI	GGATG	5 cut(s)	561, 579, 586, 631, 760
BseLI	CCNNNNNNNGG	4 cut(s)	122, 166, 281, 735
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	2 cut(s)	444, 804
BseNI	ACTGG	2 cut(s)	192, 512
BsePI	GCGCGC	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	121, 124, 806
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	3 cut(s)	147, 262, 302
BshFI	GGCC	6 cut(s)	198, 269, 383, 665, 728, 836
BsiHKAI	GWGCWC	3 cut(s)	159, 420, 523
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	4 cut(s)	122, 166, 281, 735
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	6 cut(s)	198, 269, 383, 665, 728, 836
Bsp1286I	GDGCHC	3 cut(s)	159, 420, 523
Bsp143I	GATC	3 cut(s)	62, 219, 684
Bsp1720I	GCTNAGC	2 cut(s)	430, 790
BspACI	CCGC	4 cut(s)	106, 206, 240, 797
BspANI	GGCC	6 cut(s)	198, 269, 383, 665, 728, 836
BspCNI	CTCAG	2 cut(s)	443, 803
BspFNI	CGCG	3 cut(s)	147, 262, 302
BspLI	GGNNCC	2 cut(s)	27, 39
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	1 cut(s)	70
BsrBI	CCGCTC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	192, 512
BssECI	CCNNGG	4 cut(s)	29, 316, 654, 722
BssHII	GCGCGC	1 cut(s)	300
BssMI	GATC	3 cut(s)	62, 219, 684
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	4 cut(s)	29, 316, 654, 722
Bst2BI	CACGAG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	258, 544
Bst6I	CTCTTC	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstC8I	GCNNGC	3 cut(s)	117, 302, 420
BstDEI	CTNAG	3 cut(s)	250, 430, 790
BstENI	CCTNNNNNAGG	1 cut(s)	733
BstF5I	GGATG	5 cut(s)	561, 579, 586, 631, 760
BstFNI	CGCG	3 cut(s)	147, 262, 302
BstH2I	RGCGCY	1 cut(s)	790
BstHHI	GCGC	6 cut(s)	147, 264, 302, 304, 429, 789
BstKTI	GATC	3 cut(s)	65, 222, 687
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	3 cut(s)	62, 219, 684
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 112, 373, 424
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	3 cut(s)	147, 262, 302
BstV1I	GCAGC	3 cut(s)	121, 124, 806
BsuRI	GGCC	6 cut(s)	198, 269, 383, 665, 728, 836
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	5 cut(s)	561, 579, 586, 631, 760
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 199
Cac8I	GCNNGC	3 cut(s)	117, 302, 420
CaiI	CAGNNNCTG	1 cut(s)	469
CfoI	GCGC	6 cut(s)	147, 264, 302, 304, 429, 789
Cfr13I	GGNCC	2 cut(s)	651, 726
Csp6I	GTAC	2 cut(s)	254, 739
CviAII	CATG	5 cut(s)	133, 178, 281, 287, 633
CviQI	GTAC	2 cut(s)	254, 739
DdeI	CTNAG	3 cut(s)	250, 430, 790
DpnI	GATC	3 cut(s)	64, 221, 686
DpnII	GATC	3 cut(s)	62, 219, 684
DraIII	CACNNNGTG	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	4 cut(s)	29, 316, 654, 722
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	651
Eco47III	AGCGCT	1 cut(s)	788
Eco53kI	GAGCTC	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	733
EcoO109I	RGGNCCY	2 cut(s)	651, 726
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	4 cut(s)	29, 316, 654, 722
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	4 cut(s)	29, 316, 654, 722
FaeI	CATG	5 cut(s)	136, 181, 284, 290, 636
FaiI	YATR	9 cut(s)	134, 179, 282, 288, 342, 387, 485, 634, 676
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	5 cut(s)	132, 177, 280, 286, 632
FauI	CCCGC	1 cut(s)	213
Fnu4HI	GCNGC	4 cut(s)	107, 110, 113, 795
FokI	GGATG	5 cut(s)	548, 586, 593, 638, 767
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	4 cut(s)	107, 110, 113, 795
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	6 cut(s)	146, 263, 301, 303, 428, 788
GluI	GCNGC	4 cut(s)	107, 110, 113, 795
GsuI	CTGGAG	2 cut(s)	143, 804
HaeII	RGCGCY	1 cut(s)	790
HaeIII	GGCC	6 cut(s)	198, 269, 383, 665, 728, 836
HhaI	GCGC	6 cut(s)	147, 264, 302, 304, 429, 789
Hin1II	CATG	5 cut(s)	136, 181, 284, 290, 636
Hin6I	GCGC	6 cut(s)	145, 262, 300, 302, 427, 787
HinP1I	GCGC	6 cut(s)	145, 262, 300, 302, 427, 787
HinfI	GANTC	4 cut(s)	466, 552, 598, 706
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	37, 465, 471
Hpy188III	TCNNGA	1 cut(s)	682
HpyAV	CCTTC	5 cut(s)	280, 571, 616, 642, 826
HpyCH4III	ACNGT	2 cut(s)	258, 544
HpyCH4V	TGCA	7 cut(s)	20, 97, 404, 608, 614, 632, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 112, 373, 424
HpyF3I	CTNAG	3 cut(s)	250, 430, 790
Hsp92II	CATG	5 cut(s)	136, 181, 284, 290, 636
HspAI	GCGC	6 cut(s)	145, 262, 300, 302, 427, 787
Kzo9I	GATC	3 cut(s)	62, 219, 684
LmnI	GCTCC	5 cut(s)	31, 37, 162, 213, 823
Lsp1109I	GCAGC	3 cut(s)	121, 124, 806
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	495
MalI	GATC	3 cut(s)	64, 221, 686
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	3 cut(s)	62, 219, 684
MboII	GAAGA	3 cut(s)	214, 285, 710
MfeI	CAATTG	2 cut(s)	360, 617
MhlI	GDGCHC	3 cut(s)	159, 420, 523
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	4 cut(s)	326, 360, 617, 688
MluNI	TGGCCA	1 cut(s)	665
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	2 cut(s)	15, 103
MnlI	CCTC	8 cut(s)	119, 209, 247, 450, 720, 729, 744, 772
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	1 cut(s)	591
MslI	CAYNNNNRTG	2 cut(s)	179, 285
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	3 cut(s)	106, 119, 797
MspR9I	CCNGG	1 cut(s)	74
MunI	CAATTG	2 cut(s)	360, 617
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	3 cut(s)	147, 262, 302
MwoI	GCNNNNNNNGC	4 cut(s)	103, 112, 373, 424
NdeII	GATC	3 cut(s)	62, 219, 684
NlaIII	CATG	5 cut(s)	136, 181, 284, 290, 636
NlaIV	GGNNCC	2 cut(s)	27, 39
NmuCI	GTSAC	1 cut(s)	495
PauI	GCGCGC	1 cut(s)	300
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	466, 552, 706
PflMI	CCANNNNNTGG	3 cut(s)	122, 166, 281
PkrI	GCNGC	4 cut(s)	108, 111, 114, 796
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PpuMI	RGGWCCY	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	27, 39
PspPI	GGNCC	2 cut(s)	651, 726
PspPPI	RGGWCCY	1 cut(s)	651
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	469
PteI	GCGCGC	1 cut(s)	300
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	255, 740
RsaNI	GTAC	2 cut(s)	254, 739
RseI	CAYNNNNRTG	2 cut(s)	179, 285
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	4 cut(s)	107, 110, 113, 795
Sau3AI	GATC	3 cut(s)	62, 219, 684
Sau96I	GGNCC	2 cut(s)	651, 726
ScaI	AGTACT	1 cut(s)	255
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	3 cut(s)	159, 420, 523
SetI	ASST	9 cut(s)	35, 121, 130, 159, 165, 442, 656, 740, 820
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	1 cut(s)	651
SmiMI	CAYNNNNRTG	2 cut(s)	179, 285
Sse9I	AATT	4 cut(s)	326, 360, 617, 688
SsiI	CCGC	4 cut(s)	106, 206, 240, 797
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	4 cut(s)	29, 316, 654, 722
TaaI	ACNGT	2 cut(s)	258, 544
TaqI	TCGA	2 cut(s)	683, 712
TasI	AATT	4 cut(s)	326, 360, 617, 688
TatI	WGTACW	1 cut(s)	253
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	3 cut(s)	466, 552, 706
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	2 cut(s)	27, 199
TseFI	GTSAC	1 cut(s)	495
TseI	GCWGC	3 cut(s)	109, 112, 794
Tsp45I	GTSAC	1 cut(s)	495
TspDTI	ATGAA	4 cut(s)	163, 590, 752, 771
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	2 cut(s)	27, 199
Van91I	CCANNNNNTGG	3 cut(s)	122, 166, 281
VpaK11BI	GGWCC	1 cut(s)	651
XagI	CCTNNNNNAGG	1 cut(s)	733
XapI	RAATTY	1 cut(s)	326
XmaJI	CCTAGG	1 cut(s)	29
XspI	CTAG	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.