Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003085

Physical Location & Seq

Genomic Coordinates Reverse (-)

27136629 .. 27140131

Gene Structure 3503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G263000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCCGGCTCACGCGGATCTGGACCGTCAGATCGAGCATCTGATGGAGTGCAAGACGTTGCCGGAGGCAGAGGTGAAGACGCTGTGCGAGCAAGCCAGGGCGATCCTCGTGGAGGAGTGGAACGTACAGCCGGTGAAGTGCCCCGTTACGGTGTGTGGAGATATTCACGGCCAGTTCTACGACCTCATTGAGCTCTTTCGGATAGGAGGCAACGCCCCCGACACTAATTACCTTTTTATGGGTGATTATGTAGATCGTGGGTACTATTCTGTGGAGACTGTCACACTTCTGGTGGCCCTGAAAGTCCGTTATAGAGATAGAATTACAATTCTCAGAGGAAATCACGAGAGTCGGCAAATTACTCAAGTGTATGGTTTTTATGATGAGTGCTTGAGAAAATATGGGAATGCCAATGTCTGGAAGTTCTTTACCGATTTATTTGATTATCTTCCCCTCACAGCCCTTATTGAGAGTCAGATTTTCTGTTTGCATGGGGGCCTTTCCCCATCTTTGGACACATTGGACAATATCCGAGCCTTGGATCGTATACAGGAGGTTCCACACGAAGGACCAATGTGCGATCTCTTGTGGTCTGATCCAGATGACCGCTGTGGATGGGGAATATCTCCACGTGGTGCTGGTTATACATTTGGACAGGATATAGCTGCTCAGTTCAACCATACCAATGGACTCAGTCTCATTTCAAGAGCTCATCAGCTTGTAATGGAAGGATACAATTGGTGTCAGGAAAAGAATGTGGTGACTGTTTTTAGCGCTCCAAACTATTGTTATAGGTGTGGGAATATGGCTGCAATATTGGAAATTGGGGAGAACATGGACCAGAATTTCCTGCAGTTTGACCCGGCCCCACGTCAAATTGAGCCCGACAACACACGCAAGACTCCAGATTATTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

307

Amino Acids

35.03

Weight (kDa)

4.85

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10430 AT1G10430 AT1G59830 AT1G59830 AT1G69960
fragaria_vesca	FvH4_4g35390 FvH4_5g16000
malus_domestica	MD06G1183800.v1.1 MD13G1083600.v1.1 MD14G1189900.v1.1 MD16G1083000.v1.1
prunus_persica	Prupe.1G263000_v2.0.a1 Prupe.5G182500_v2.0.a1
pyrus_communis	pycom06g16290 pycom14g15750 pycom16g07190
rosa_chinensis	RchiOBHm_Chr4g0445001 RchiOBHm_Chr7g0180071
rosa_laevigata	RLG00000005297 RLG00000005778
rosa_multiflora	Rmu_sc0017616.1_g000002 Rmu_ssc0000119.1_g000027 Rmu_ssc0000285.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273150 Rroxscaffold_5G00385510
rosa_rugosa	Rorug04G0357300 Rorug06G0430300
rosa_samantha	Rh4AG419100 Rh4BG430800 Rh4CG445100 Rh4DG426700 Rh7AG030600 Rh7BG030500 Rh7CG032300 Rh7DG031300
rosa_wichuraiana	Rw4G035880 Rw7G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccI	GTMKAC	1 cut(s)	547
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	14, 607
AclWI	GGATC	4 cut(s)	24, 97, 549, 590
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	844
AcvI	CACGTG	1 cut(s)	632
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	126, 263
AfeI	AGCGCT	1 cut(s)	775
AfiI	CCNNNNNNNGG	7 cut(s)	112, 148, 238, 417, 511, 538, 566
AgsI	TTSAA	2 cut(s)	676, 705
AjiI	CACGTC	1 cut(s)	872
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	4 cut(s)	193, 665, 710, 718
AluI	AGCT	4 cut(s)	193, 665, 710, 718
Alw21I	GWGCWC	2 cut(s)	195, 712
Alw26I	GTCTC	2 cut(s)	269, 701
AlwI	GGATC	4 cut(s)	24, 97, 549, 590
Aor51HI	AGCGCT	1 cut(s)	775
AoxI	GGCC	4 cut(s)	169, 294, 496, 864
ApeKI	GCWGC	2 cut(s)	665, 809
ApoI	RAATTY	1 cut(s)	844
AspLEI	GCGC	1 cut(s)	776
AspS9I	GGNCC	6 cut(s)	22, 295, 496, 569, 838, 865
AsuC2I	CCSGG	1 cut(s)	863
AsuHPI	GGTGA	4 cut(s)	85, 145, 254, 772
AvaII	GGWCC	3 cut(s)	22, 569, 838
BaeGI	GKGCMC	1 cut(s)	143
BanII	GRGCYC	3 cut(s)	195, 712, 885
BauI	CACGAG	2 cut(s)	107, 344
BbrPI	CACGTG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	195, 712
BbvI	GCAGC	2 cut(s)	652, 796
BccI	CCATC	3 cut(s)	37, 514, 609
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	725
BcnI	CCSGG	1 cut(s)	863
BcoDI	GTCTC	2 cut(s)	269, 701
BfmI	CTRYAG	1 cut(s)	851
BfoI	RGCGCY	1 cut(s)	777
BfuI	GTATCC	1 cut(s)	725
BisI	GCNGC	2 cut(s)	666, 810
BlsI	GCNGC	2 cut(s)	667, 811
Bme1390I	CCNGG	2 cut(s)	97, 863
Bme18I	GGWCC	3 cut(s)	22, 569, 838
BmgBI	CACGTC	1 cut(s)	872
BmgT120I	GGNCC	6 cut(s)	22, 295, 496, 569, 838, 865
BmiI	GGNNCC	3 cut(s)	497, 558, 867
BmrFI	CCNGG	2 cut(s)	97, 863
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	888
BpuEI	CTTGAG	2 cut(s)	348, 412
BpuMI	CCSGG	1 cut(s)	863
BsaAI	YACGTR	1 cut(s)	632
BsaJI	CCNNGG	2 cut(s)	96, 537
Bsc4I	CCNNNNNNNGG	7 cut(s)	112, 148, 238, 417, 511, 538, 566
Bse118I	RCCGGY	2 cut(s)	4, 130
Bse1I	ACTGG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	96, 537
BseGI	GGATG	1 cut(s)	620
BseLI	CCNNNNNNNGG	7 cut(s)	112, 148, 238, 417, 511, 538, 566
BseMII	CTCAG	3 cut(s)	346, 683, 706
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	652, 796
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	4 cut(s)	171, 296, 498, 866
BsiHKAI	GWGCWC	2 cut(s)	195, 712
BsiSI	CCGG	4 cut(s)	5, 62, 131, 863
BslI	CCNNNNNNNGG	7 cut(s)	112, 148, 238, 417, 511, 538, 566
BsmAI	GTCTC	2 cut(s)	269, 701
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	4 cut(s)	171, 296, 498, 866
Bsp1286I	GDGCHC	4 cut(s)	143, 195, 712, 885
Bsp143I	GATC	7 cut(s)	16, 30, 102, 253, 541, 580, 595
BspACI	CCGC	2 cut(s)	14, 607
BspANI	GGCC	4 cut(s)	171, 296, 498, 866
BspCNI	CTCAG	3 cut(s)	345, 682, 705
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	3 cut(s)	497, 558, 867
BspMAI	CTGCAG	1 cut(s)	855
BspPI	GGATC	4 cut(s)	24, 97, 549, 590
BsrFI	RCCGGY	2 cut(s)	4, 130
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	2 cut(s)	4, 130
BssECI	CCNNGG	2 cut(s)	96, 537
BssMI	GATC	7 cut(s)	16, 30, 102, 253, 541, 580, 595
BssNAI	GTATAC	1 cut(s)	548
BssSI	CACGAG	2 cut(s)	107, 344
BssT1I	CCWWGG	1 cut(s)	537
Bst1107I	GTATAC	1 cut(s)	548
Bst2BI	CACGAG	2 cut(s)	107, 344
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	4 cut(s)	26, 151, 280, 766
BstBAI	YACGTR	1 cut(s)	632
BstC8I	GCNNGC	3 cut(s)	6, 89, 93
BstDEI	CTNAG	3 cut(s)	332, 669, 692
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	620
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	777
BstHHI	GCGC	1 cut(s)	776
BstKTI	GATC	7 cut(s)	19, 33, 105, 256, 544, 583, 598
BstMAI	GTCTC	2 cut(s)	269, 701
BstMBI	GATC	7 cut(s)	16, 30, 102, 253, 541, 580, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	95, 861
BstSFI	CTRYAG	1 cut(s)	851
BstSLI	GKGCMC	1 cut(s)	143
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	652, 796
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	16
BstZ17I	GTATAC	1 cut(s)	548
BsuI	GTATCC	1 cut(s)	725
BsuRI	GGCC	4 cut(s)	171, 296, 498, 866
BtrI	CACGTC	1 cut(s)	872
BtsCI	GGATG	1 cut(s)	620
Cac8I	GCNNGC	3 cut(s)	6, 89, 93
CfoI	GCGC	1 cut(s)	776
Cfr10I	RCCGGY	2 cut(s)	4, 130
Cfr13I	GGNCC	6 cut(s)	22, 295, 496, 569, 838, 865
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	125, 262
CviAII	CATG	2 cut(s)	491, 835
CviQI	GTAC	2 cut(s)	125, 262
DdeI	CTNAG	3 cut(s)	332, 669, 692
DpnI	GATC	7 cut(s)	18, 32, 104, 255, 543, 582, 597
DpnII	GATC	7 cut(s)	16, 30, 102, 253, 541, 580, 595
DraIII	CACNNNGTG	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	169
Ecl136II	GAGCTC	2 cut(s)	193, 710
Eco130I	CCWWGG	1 cut(s)	537
Eco24I	GRGCYC	3 cut(s)	195, 712, 885
Eco47I	GGWCC	3 cut(s)	22, 569, 838
Eco47III	AGCGCT	1 cut(s)	775
Eco53kI	GAGCTC	2 cut(s)	193, 710
Eco72I	CACGTG	1 cut(s)	632
EcoICRI	GAGCTC	2 cut(s)	193, 710
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	537
EcoT38I	GRGCYC	3 cut(s)	195, 712, 885
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	2 cut(s)	494, 838
FatI	CATG	2 cut(s)	490, 834
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	666, 810
FokI	GGATG	1 cut(s)	627
FriOI	GRGCYC	3 cut(s)	195, 712, 885
Fsp4HI	GCNGC	2 cut(s)	666, 810
GlaI	GCGC	1 cut(s)	775
GluI	GCNGC	2 cut(s)	666, 810
GsuI	CTGGAG	1 cut(s)	888
HaeII	RGCGCY	1 cut(s)	777
HaeIII	GGCC	4 cut(s)	171, 296, 498, 866
HapII	CCGG	4 cut(s)	5, 62, 131, 863
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	776
Hin1II	CATG	2 cut(s)	494, 838
Hin6I	GCGC	1 cut(s)	774
HinP1I	GCGC	1 cut(s)	774
HinfI	GANTC	4 cut(s)	349, 472, 690, 901
HpaII	CCGG	4 cut(s)	5, 62, 131, 863
HphI	GGTGA	4 cut(s)	85, 145, 254, 772
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	7 cut(s)	30, 42, 201, 335, 477, 533, 595
Hpy188III	TCNNGA	7 cut(s)	20, 344, 418, 599, 705, 746, 905
Hpy8I	GTNNAC	1 cut(s)	548
HpyAV	CCTTC	2 cut(s)	560, 722
HpyCH4III	ACNGT	4 cut(s)	26, 151, 280, 766
HpyCH4IV	ACGT	4 cut(s)	56, 123, 631, 871
HpyCH4V	TGCA	4 cut(s)	51, 490, 812, 853
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	3 cut(s)	332, 669, 692
HpySE526I	ACGT	4 cut(s)	56, 123, 631, 871
Hsp92II	CATG	2 cut(s)	494, 838
HspAI	GCGC	1 cut(s)	774
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	7 cut(s)	16, 30, 102, 253, 541, 580, 595
LmnI	GCTCC	1 cut(s)	781
Lsp1109I	GCAGC	2 cut(s)	652, 796
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	4 cut(s)	56, 123, 631, 871
MaeIII	GTNAC	3 cut(s)	145, 280, 760
MalI	GATC	7 cut(s)	18, 32, 104, 255, 543, 582, 597
MboI	GATC	7 cut(s)	16, 30, 102, 253, 541, 580, 595
MboII	GAAGA	2 cut(s)	88, 440
MfeI	CAATTG	1 cut(s)	736
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	4 cut(s)	143, 195, 712, 885
MluCI	AATT	8 cut(s)	226, 321, 327, 357, 736, 822, 844, 876
MlyI	GAGTC	4 cut(s)	358, 481, 684, 895
MnlI	CCTC	9 cut(s)	58, 64, 106, 116, 194, 200, 329, 464, 547
MroNI	GCCGGC	1 cut(s)	4
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	609
MspI	CCGG	4 cut(s)	5, 62, 131, 863
MspR9I	CCNGG	2 cut(s)	97, 863
MunI	CAATTG	1 cut(s)	736
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	88
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	863
NdeII	GATC	7 cut(s)	16, 30, 102, 253, 541, 580, 595
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	494, 838
NlaIV	GGNNCC	3 cut(s)	497, 558, 867
NmuCI	GTSAC	2 cut(s)	280, 760
PctI	GAATGC	1 cut(s)	412
PdiI	GCCGGC	1 cut(s)	6
PflFI	GACNNNGTC	1 cut(s)	693
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	2 cut(s)	667, 811
PleI	GAGTC	4 cut(s)	357, 480, 684, 895
PmaCI	CACGTG	1 cut(s)	632
PmlI	CACGTG	1 cut(s)	632
PpsI	GAGTC	4 cut(s)	357, 480, 684, 895
Ppu21I	YACGTR	1 cut(s)	632
Psp124BI	GAGCTC	2 cut(s)	195, 712
Psp6I	CCWGG	1 cut(s)	95
PspCI	CACGTG	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	497, 558, 867
PspPI	GGNCC	6 cut(s)	22, 295, 496, 569, 838, 865
PstI	CTGCAG	1 cut(s)	855
PsuI	RGATCY	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	693
RsaI	GTAC	2 cut(s)	126, 263
RsaNI	GTAC	2 cut(s)	125, 262
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	2 cut(s)	195, 712
SatI	GCNGC	2 cut(s)	666, 810
Sau3AI	GATC	7 cut(s)	16, 30, 102, 253, 541, 580, 595
Sau96I	GGNCC	6 cut(s)	22, 295, 496, 569, 838, 865
SchI	GAGTC	4 cut(s)	358, 481, 684, 895
ScrFI	CCNGG	2 cut(s)	97, 863
SduI	GDGCHC	4 cut(s)	143, 195, 712, 885
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	851
SinI	GGWCC	3 cut(s)	22, 569, 838
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	2 cut(s)	363, 391
SmoI	CTYRAG	2 cut(s)	363, 391
Sse9I	AATT	8 cut(s)	226, 321, 327, 357, 736, 822, 844, 876
SsiI	CCGC	2 cut(s)	14, 607
SspI	AATATT	1 cut(s)	816
SstI	GAGCTC	2 cut(s)	195, 712
StyD4I	CCNGG	2 cut(s)	95, 861
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	4 cut(s)	26, 151, 280, 766
TaiI	ACGT	4 cut(s)	59, 126, 634, 874
TaqI	TCGA	1 cut(s)	33
TasI	AATT	8 cut(s)	226, 321, 327, 357, 736, 822, 844, 876
TseFI	GTSAC	2 cut(s)	280, 760
TseI	GCWGC	2 cut(s)	665, 809
Tsp45I	GTSAC	2 cut(s)	280, 760
TspGWI	ACGGA	1 cut(s)	296
Tth111I	GACNNNGTC	1 cut(s)	693
Van91I	CCANNNNNTGG	1 cut(s)	417
VpaK11BI	GGWCC	3 cut(s)	22, 569, 838
XagI	CCTNNNNNAGG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	844
XmiI	GTMKAC	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.