Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000285.1

Orthogroup ID

OG0003085

Physical Location & Seq

Genomic Coordinates Forward (+)

2555 .. 5210

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000285.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgccgtctcacggggatctggaccgtcagatcgagcatctgatggagtgcaagacgttgccggaggcggaggtgaagacgctgtgcgagcaagcgagggcgatcctggtggaggagtggaacgtgcaaccggtcaagtgccccgttacggtgtgtggggatatacacggccagttctacgacctcattgagctttttcggataggaggcaacgctcctgatactaattaccttttcatgggtgattatgtagatcgtggatattattctgtggagactgtcacacttctggtggctctgaaagttcgttatagagatagaattacgatcctgagaggaaatcatgagagtcggcaaattactcaagtgtatggtttctacgacgagtgtttacgaaaatacggaaatgccaatgtctggaagtactttactgacttatttgattatcttcccctcacagcccttattgagagtcagattttctgtttgcatgggggcctttcaccatcgttggacacattggacaatatccgagccttggaccgtatccaggaggttccacatgaaggaccaatgtgcgatctcttatggtctgatcctgatgaccgctgtggttggggaatatcgccacgtggtgctggttatacatttggacaggatatagctgctcagtttaatcataccaatggactcagcctgatttcaagagctcatcagctagtcatggaaggatacaactggtgccaggaaaagaacgtcgtgactgtttttagtgctccaaactattgttatcggtgtgggaatatggctgcaattttggaaattggggagaatatggaccagaattttctacagtttgacccagctcctcgtcaaattgagcctgacaacacacgcaagactccagattattttttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

306

Amino Acids

35.05

Weight (kDa)

4.85

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10430 AT1G10430 AT1G59830 AT1G59830 AT1G69960
fragaria_vesca	FvH4_4g35390 FvH4_5g16000
malus_domestica	MD06G1183800.v1.1 MD13G1083600.v1.1 MD14G1189900.v1.1 MD16G1083000.v1.1
prunus_persica	Prupe.1G263000_v2.0.a1 Prupe.5G182500_v2.0.a1
pyrus_communis	pycom06g16290 pycom14g15750 pycom16g07190
rosa_chinensis	RchiOBHm_Chr4g0445001 RchiOBHm_Chr7g0180071
rosa_laevigata	RLG00000005297 RLG00000005778
rosa_multiflora	Rmu_sc0017616.1_g000002 Rmu_ssc0000119.1_g000027 Rmu_ssc0000285.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273150 Rroxscaffold_5G00385510
rosa_rugosa	Rorug04G0357300 Rorug06G0430300
rosa_samantha	Rh4AG419100 Rh4BG430800 Rh4CG445100 Rh4DG426700 Rh7AG030600 Rh7BG030500 Rh7CG032300 Rh7DG031300
rosa_wichuraiana	Rw4G035880 Rw7G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	741
AccB7I	CCANNNNNTGG	1 cut(s)	417
AciI	CCGC	2 cut(s)	68, 607
AclWI	GGATC	4 cut(s)	24, 97, 322, 590
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	844
AcvI	CACGTG	1 cut(s)	632
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	8 cut(s)	11, 112, 148, 238, 417, 538, 550, 566
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	705
AjnI	CCWGG	3 cut(s)	105, 549, 744
AluBI	AGCT	5 cut(s)	193, 665, 710, 718, 866
AluI	AGCT	5 cut(s)	193, 665, 710, 718, 866
Alw21I	GWGCWC	2 cut(s)	712, 778
Alw26I	GTCTC	2 cut(s)	12, 269
AlwI	GGATC	4 cut(s)	24, 97, 322, 590
AoxI	GGCC	2 cut(s)	169, 496
ApeKI	GCWGC	2 cut(s)	665, 809
ApoI	RAATTY	1 cut(s)	844
AsiGI	ACCGGT	1 cut(s)	130
AspS9I	GGNCC	5 cut(s)	22, 496, 541, 569, 838
AsuHPI	GGTGA	3 cut(s)	85, 254, 495
AvaII	GGWCC	4 cut(s)	22, 541, 569, 838
BaeGI	GKGCMC	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	712
BbrPI	CACGTG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	712, 778
BbvI	GCAGC	2 cut(s)	652, 796
BccI	CCATC	2 cut(s)	37, 514
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	3 cut(s)	107, 551, 746
BciVI	GTATCC	2 cut(s)	557, 725
BcoDI	GTCTC	2 cut(s)	12, 269
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	851
BfuI	GTATCC	2 cut(s)	557, 725
BisI	GCNGC	2 cut(s)	666, 810
BlsI	GCNGC	2 cut(s)	667, 811
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	3 cut(s)	107, 551, 746
Bme18I	GGWCC	4 cut(s)	22, 541, 569, 838
BmgT120I	GGNCC	5 cut(s)	22, 496, 541, 569, 838
BmiI	GGNNCC	3 cut(s)	497, 558, 743
BmrFI	CCNGG	3 cut(s)	107, 551, 746
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	888
BpuEI	CTTGAG	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	632
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	8 cut(s)	11, 112, 148, 238, 417, 538, 550, 566
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	172, 743
BseBI	CCWGG	3 cut(s)	107, 551, 746
BseDI	CCNNGG	1 cut(s)	537
BseLI	CCNNNNNNNGG	8 cut(s)	11, 112, 148, 238, 417, 538, 550, 566
BseMII	CTCAG	3 cut(s)	323, 683, 706
BseNI	ACTGG	2 cut(s)	172, 743
BseRI	GAGGAG	2 cut(s)	128, 858
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	652, 796
BseYI	CCCAGC	1 cut(s)	862
BshFI	GGCC	2 cut(s)	171, 498
BshNI	GGYRCC	1 cut(s)	741
BshTI	ACCGGT	1 cut(s)	130
BsiHKAI	GWGCWC	2 cut(s)	712, 778
BsiSI	CCGG	2 cut(s)	62, 131
BslI	CCNNNNNNNGG	8 cut(s)	11, 112, 148, 238, 417, 538, 550, 566
BsmAI	GTCTC	2 cut(s)	12, 269
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	171, 498
Bsp1286I	GDGCHC	3 cut(s)	143, 712, 778
Bsp143I	GATC	7 cut(s)	16, 30, 102, 253, 327, 580, 595
BspACI	CCGC	2 cut(s)	68, 607
BspANI	GGCC	2 cut(s)	171, 498
BspCNI	CTCAG	3 cut(s)	324, 682, 705
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	3 cut(s)	497, 558, 743
BspPI	GGATC	4 cut(s)	24, 97, 322, 590
BspT107I	GGYRCC	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	172, 743
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	7 cut(s)	16, 30, 102, 253, 327, 580, 595
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	3 cut(s)	107, 551, 746
Bst4CI	ACNGT	6 cut(s)	26, 151, 280, 545, 766, 855
BstBAI	YACGTR	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	89, 93
BstDEI	CTNAG	3 cut(s)	332, 669, 692
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstKTI	GATC	7 cut(s)	19, 33, 105, 256, 330, 583, 598
BstMAI	GTCTC	2 cut(s)	12, 269
BstMBI	GATC	7 cut(s)	16, 30, 102, 253, 327, 580, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	3 cut(s)	107, 551, 746
BstSCI	CCNGG	3 cut(s)	105, 549, 744
BstSFI	CTRYAG	1 cut(s)	851
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	652, 796
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BsuI	GTATCC	2 cut(s)	557, 725
BsuRI	GGCC	2 cut(s)	171, 498
Cac8I	GCNNGC	2 cut(s)	89, 93
CciI	TCATGA	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	5 cut(s)	22, 496, 541, 569, 838
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	424
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	5 cut(s)	238, 344, 491, 563, 724
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	3 cut(s)	332, 669, 692
DpnI	GATC	7 cut(s)	18, 32, 104, 255, 329, 582, 597
DpnII	GATC	7 cut(s)	16, 30, 102, 253, 327, 580, 595
DraIII	CACNNNGTG	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	712
Eco47I	GGWCC	4 cut(s)	22, 541, 569, 838
Eco53kI	GAGCTC	1 cut(s)	710
Eco72I	CACGTG	1 cut(s)	632
EcoICRI	GAGCTC	1 cut(s)	710
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	105, 549, 744
EcoT14I	CCWWGG	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	537
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	5 cut(s)	241, 347, 494, 566, 727
FatI	CATG	5 cut(s)	237, 343, 490, 562, 723
Fnu4HI	GCNGC	2 cut(s)	666, 810
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	2 cut(s)	666, 810
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	2 cut(s)	666, 810
GsaI	CCCAGC	1 cut(s)	866
GsuI	CTGGAG	1 cut(s)	888
HaeIII	GGCC	2 cut(s)	171, 498
HapII	CCGG	2 cut(s)	62, 131
HgaI	GACGC	1 cut(s)	88
Hin1II	CATG	5 cut(s)	241, 347, 494, 566, 727
HinfI	GANTC	4 cut(s)	349, 472, 690, 901
HpaII	CCGG	2 cut(s)	62, 131
HphI	GGTGA	3 cut(s)	85, 254, 495
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	7 cut(s)	30, 42, 201, 300, 477, 533, 595
Hpy188III	TCNNGA	9 cut(s)	20, 218, 331, 344, 418, 599, 705, 760, 905
Hpy8I	GTNNAC	1 cut(s)	392
Hpy99I	CGWCG	2 cut(s)	386, 761
HpyAV	CCTTC	2 cut(s)	560, 722
HpyCH4III	ACNGT	6 cut(s)	26, 151, 280, 545, 766, 855
HpyCH4IV	ACGT	4 cut(s)	56, 123, 631, 756
HpyCH4V	TGCA	4 cut(s)	51, 127, 490, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	3 cut(s)	332, 669, 692
HpySE526I	ACGT	4 cut(s)	56, 123, 631, 756
Hsp92II	CATG	5 cut(s)	241, 347, 494, 566, 727
Kzo9I	GATC	7 cut(s)	16, 30, 102, 253, 327, 580, 595
LmnI	GCTCC	3 cut(s)	220, 781, 871
Lsp1109I	GCAGC	2 cut(s)	652, 796
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	4 cut(s)	56, 123, 631, 756
MaeIII	GTNAC	3 cut(s)	145, 280, 760
MalI	GATC	7 cut(s)	18, 32, 104, 255, 329, 582, 597
MboI	GATC	7 cut(s)	16, 30, 102, 253, 327, 580, 595
MboII	GAAGA	2 cut(s)	88, 440
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	3 cut(s)	143, 712, 778
MluCI	AATT	7 cut(s)	226, 321, 357, 813, 822, 844, 876
MlyI	GAGTC	4 cut(s)	358, 481, 684, 895
MmeI	TCCRAC	1 cut(s)	492
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	609
MspI	CCGG	2 cut(s)	62, 131
MspR9I	CCNGG	3 cut(s)	107, 551, 746
MvaI	CCWGG	3 cut(s)	107, 551, 746
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	7 cut(s)	16, 30, 102, 253, 327, 580, 595
NlaIII	CATG	5 cut(s)	241, 347, 494, 566, 727
NlaIV	GGNNCC	3 cut(s)	497, 558, 743
NmuCI	GTSAC	2 cut(s)	280, 760
PagI	TCATGA	1 cut(s)	343
PflMI	CCANNNNNTGG	1 cut(s)	417
PfoI	TCCNGGA	1 cut(s)	549
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	667, 811
PleI	GAGTC	4 cut(s)	357, 480, 684, 895
PmaCI	CACGTG	1 cut(s)	632
PmlI	CACGTG	1 cut(s)	632
PpsI	GAGTC	4 cut(s)	357, 480, 684, 895
Ppu21I	YACGTR	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	712
Psp6I	CCWGG	3 cut(s)	105, 549, 744
PspCI	CACGTG	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	862
PspGI	CCWGG	3 cut(s)	105, 549, 744
PspN4I	GGNNCC	3 cut(s)	497, 558, 743
PspPI	GGNCC	5 cut(s)	22, 496, 541, 569, 838
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	1 cut(s)	712
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	2 cut(s)	666, 810
Sau3AI	GATC	7 cut(s)	16, 30, 102, 253, 327, 580, 595
Sau96I	GGNCC	5 cut(s)	22, 496, 541, 569, 838
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	4 cut(s)	358, 481, 684, 895
ScrFI	CCNGG	3 cut(s)	107, 551, 746
SduI	GDGCHC	3 cut(s)	143, 712, 778
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	851
SinI	GGWCC	4 cut(s)	22, 541, 569, 838
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	7 cut(s)	226, 321, 357, 813, 822, 844, 876
SsiI	CCGC	2 cut(s)	68, 607
SspMI	CTAG	1 cut(s)	719
SstI	GAGCTC	1 cut(s)	712
StyD4I	CCNGG	3 cut(s)	105, 549, 744
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	6 cut(s)	26, 151, 280, 545, 766, 855
TaiI	ACGT	4 cut(s)	59, 126, 634, 759
TaqI	TCGA	1 cut(s)	33
TasI	AATT	7 cut(s)	226, 321, 357, 813, 822, 844, 876
TatI	WGTACW	1 cut(s)	423
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TseFI	GTSAC	2 cut(s)	280, 760
TseI	GCWGC	2 cut(s)	665, 809
Tsp45I	GTSAC	2 cut(s)	280, 760
TspDTI	ATGAA	2 cut(s)	226, 579
TspGWI	ACGGA	1 cut(s)	417
Van91I	CCANNNNNTGG	1 cut(s)	417
VpaK11BI	GGWCC	4 cut(s)	22, 541, 569, 838
XagI	CCTNNNNNAGG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	844
XspI	CTAG	1 cut(s)	719
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.