Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003085

Physical Location & Seq

Genomic Coordinates Reverse (-)

18267676 .. 18270308

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCCACCGCACGCCGATCGGGACCGTCAGATTGAGCACCTGATGCAGTGCAAGCCTCTGCAGGAGGCGGAGGTGAAGACGCTGTGCGAGCAGGCGAGGACGATCTTGGTCGAGGAGTGGAACGTGCAGCCGGTGAAGTGCCCCGTCACGGTTTGCGGAGACATCCATGGCCAGTTCCACGACCTCGTCGAGCTCTTTCGGATCGGCGGCCACGCCCCCGATACCAATTACCTCTTCATGGGCGATTATGTAGATCGAGGATACTACTCTGTGGAGACTGTCACACTTCTAGTGGCCCTGAAAGTACGTTACAGAGATAGAATTACAATTCTTAGAGGAAATCATGAGAGTCGGCAAATAACTCAAGTGTATGGTTTCTATGATGAGTGCTTGAGGAAATATGGAAATGCTAATGTCTGGAAGTTTTTCACTGACCTTTTTGATTATTTGCCGCTGACAGCCTTGATTGAGAGTCAGATCTTTTGCTTACACGGCGGTCTCTCTCCTTCATTAGATACATTAGACAATATTCGTGCTCTGGACCGGATACAAGAGGTTCCTCACGAGGGTCCAATGTGTGATCTGTTGTGGTCTGACCCGGATGATCGATGTGGGTGGGGAATATCTCCTCGGGGTGCAGGGTATACATTTGGACAAGATATAGCAGCCCAGTTTAACCACACTAATGGGCTAAGTCTTATTTCTAGAGCTCACCAGCTTGTTATGGAGGGTTACAATTGGTGCCAGGAAAAGAATGTTGTGACGGTGTTTAGTGCTCCAAATTACTGCTATCGCTGTGGAAATATGGCTGCAATTCTTGAGATTGGAGAGAATATGGACCAGAATTTCCTTCAGTTTGACCCAGCACCGCGTCAGGTCGAACCTGATACAACACGCAGAACTCCAGATTATTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

307

Amino Acids

35.14

Weight (kDa)

5.1

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10430 AT1G10430 AT1G59830 AT1G59830 AT1G69960
fragaria_vesca	FvH4_4g35390 FvH4_5g16000
malus_domestica	MD06G1183800.v1.1 MD13G1083600.v1.1 MD14G1189900.v1.1 MD16G1083000.v1.1
prunus_persica	Prupe.1G263000_v2.0.a1 Prupe.5G182500_v2.0.a1
pyrus_communis	pycom06g16290 pycom14g15750 pycom16g07190
rosa_chinensis	RchiOBHm_Chr4g0445001 RchiOBHm_Chr7g0180071
rosa_laevigata	RLG00000005297 RLG00000005778
rosa_multiflora	Rmu_sc0017616.1_g000002 Rmu_ssc0000119.1_g000027 Rmu_ssc0000285.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273150 Rroxscaffold_5G00385510
rosa_rugosa	Rorug04G0357300 Rorug06G0430300
rosa_samantha	Rh4AG419100 Rh4BG430800 Rh4CG445100 Rh4DG426700 Rh7AG030600 Rh7BG030500 Rh7CG032300 Rh7DG031300
rosa_wichuraiana	Rw4G035880 Rw7G002550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	741
AccI	GTMKAC	1 cut(s)	644
AccII	CGCG	1 cut(s)	871
AciI	CCGC	7 cut(s)	8, 68, 156, 207, 452, 495, 869
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	2 cut(s)	169, 208
AcsI	RAATTY	1 cut(s)	844
AcuI	CTGAAG	1 cut(s)	836
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	3 cut(s)	148, 238, 566
AjnI	CCWGG	1 cut(s)	744
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	3 cut(s)	193, 710, 718
AluI	AGCT	3 cut(s)	193, 710, 718
Alw21I	GWGCWC	5 cut(s)	39, 195, 538, 712, 778
Alw26I	GTCTC	3 cut(s)	153, 269, 503
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	3 cut(s)	169, 208, 294
ApeKI	GCWGC	3 cut(s)	127, 665, 809
ApoI	RAATTY	1 cut(s)	844
Asp700I	GAANNNNTTC	1 cut(s)	425
AspS9I	GGNCC	5 cut(s)	22, 295, 541, 569, 838
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	85, 145, 704
AvaI	CYCGRG	1 cut(s)	630
AvaII	GGWCC	4 cut(s)	22, 541, 569, 838
BaeGI	GKGCMC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	741
BanII	GRGCYC	2 cut(s)	195, 712
BauI	CACGAG	1 cut(s)	563
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	5 cut(s)	39, 195, 538, 712, 778
BbvI	GCAGC	3 cut(s)	139, 677, 796
BceAI	ACGGC	1 cut(s)	508
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	746
BciVI	GTATCC	2 cut(s)	254, 540
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	3 cut(s)	153, 269, 503
BfaI	CTAG	2 cut(s)	290, 705
BfmI	CTRYAG	1 cut(s)	59
BfuI	GTATCC	2 cut(s)	254, 540
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	5 cut(s)	128, 208, 452, 666, 810
BlsI	GCNGC	5 cut(s)	129, 209, 453, 667, 811
Bme1390I	CCNGG	2 cut(s)	599, 746
Bme18I	GGWCC	4 cut(s)	22, 541, 569, 838
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	5 cut(s)	22, 295, 541, 569, 838
BmiI	GGNNCC	4 cut(s)	23, 558, 570, 743
BmrFI	CCNGG	2 cut(s)	599, 746
BmrI	ACTGGG	1 cut(s)	664
BmsI	GCATC	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	888
BpuEI	CTTGAG	3 cut(s)	348, 412, 839
BpuMI	CCSGG	1 cut(s)	599
Bsa29I	ATCGAT	1 cut(s)	607
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	166, 629
BsaWI	WCCGGW	1 cut(s)	543
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 238, 566
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	172, 670
BseBI	CCWGG	1 cut(s)	746
BseCI	ATCGAT	1 cut(s)	607
BseDI	CCNNGG	2 cut(s)	166, 629
BseGI	GGATG	2 cut(s)	162, 607
BseLI	CCNNNNNNNGG	3 cut(s)	148, 238, 566
BseNI	ACTGG	2 cut(s)	172, 670
BseRI	GAGGAG	2 cut(s)	128, 618
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	3 cut(s)	139, 677, 796
BseYI	CCCAGC	1 cut(s)	862
BsgI	GTGCAG	2 cut(s)	146, 657
Bsh1236I	CGCG	1 cut(s)	871
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	3 cut(s)	171, 210, 296
BshNI	GGYRCC	1 cut(s)	741
BshVI	ATCGAT	1 cut(s)	607
BsiEI	CGRYCG	1 cut(s)	19
BsiHKAI	GWGCWC	5 cut(s)	39, 195, 538, 712, 778
BsiHKCI	CYCGRG	1 cut(s)	630
BsiSI	CCGG	3 cut(s)	131, 544, 599
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	148, 238, 566
BsmAI	GTCTC	3 cut(s)	153, 269, 503
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	171, 210, 296
Bso31I	GGTCTC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	630
Bsp1286I	GDGCHC	6 cut(s)	39, 143, 195, 538, 712, 778
Bsp143I	GATC	7 cut(s)	16, 102, 201, 253, 477, 580, 604
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	7 cut(s)	8, 68, 156, 207, 452, 495, 869
BspANI	GGCC	3 cut(s)	171, 210, 296
BspDI	ATCGAT	1 cut(s)	607
BspFNI	CGCG	1 cut(s)	871
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	4 cut(s)	23, 558, 570, 743
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	741
BspTNI	GGTCTC	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	172, 670
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	166, 629
BssMI	GATC	7 cut(s)	16, 102, 201, 253, 477, 580, 604
BssNAI	GTATAC	1 cut(s)	645
BssSI	CACGAG	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	166
Bst1107I	GTATAC	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	563
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	4 cut(s)	26, 151, 280, 766
Bst6I	CTCTTC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstC8I	GCNNGC	4 cut(s)	12, 53, 89, 93
BstDEI	CTNAG	2 cut(s)	332, 692
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	2 cut(s)	162, 607
BstFNI	CGCG	1 cut(s)	871
BstKTI	GATC	7 cut(s)	19, 105, 204, 256, 480, 583, 607
BstMAI	GTCTC	3 cut(s)	153, 269, 503
BstMBI	GATC	7 cut(s)	16, 102, 201, 253, 477, 580, 604
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 52, 88, 492
BstNI	CCWGG	1 cut(s)	746
BstSCI	CCNGG	2 cut(s)	597, 744
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	143
BstUI	CGCG	1 cut(s)	871
BstV1I	GCAGC	3 cut(s)	139, 677, 796
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	477
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	477
BstZ17I	GTATAC	1 cut(s)	645
Bsu15I	ATCGAT	1 cut(s)	607
BsuI	GTATCC	2 cut(s)	254, 540
BsuRI	GGCC	3 cut(s)	171, 210, 296
BsuTUI	ATCGAT	1 cut(s)	607
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	162, 607
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	53, 429
Cac8I	GCNNGC	4 cut(s)	12, 53, 89, 93
CciI	TCATGA	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	5 cut(s)	22, 295, 541, 569, 838
ClaI	ATCGAT	1 cut(s)	607
CseI	GACGC	2 cut(s)	88, 860
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	3 cut(s)	167, 238, 344
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	332, 692
DpnI	GATC	7 cut(s)	18, 104, 203, 255, 479, 582, 606
DpnII	GATC	7 cut(s)	16, 102, 201, 253, 477, 580, 604
EaeI	YGGCCR	2 cut(s)	169, 208
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	2 cut(s)	193, 710
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	195, 712
Eco31I	GGTCTC	1 cut(s)	503
Eco47I	GGWCC	4 cut(s)	22, 541, 569, 838
Eco53kI	GAGCTC	2 cut(s)	193, 710
Eco57I	CTGAAG	1 cut(s)	836
Eco88I	CYCGRG	1 cut(s)	630
EcoICRI	GAGCTC	2 cut(s)	193, 710
EcoRII	CCWGG	1 cut(s)	744
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	2 cut(s)	195, 712
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	3 cut(s)	170, 241, 347
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	3 cut(s)	166, 237, 343
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	5 cut(s)	128, 208, 452, 666, 810
FokI	GGATG	2 cut(s)	149, 614
FriOI	GRGCYC	2 cut(s)	195, 712
Fsp4HI	GCNGC	5 cut(s)	128, 208, 452, 666, 810
FspBI	CTAG	2 cut(s)	290, 705
GluI	GCNGC	5 cut(s)	128, 208, 452, 666, 810
GsaI	CCCAGC	1 cut(s)	866
GsuI	CTGGAG	1 cut(s)	888
HaeIII	GGCC	3 cut(s)	171, 210, 296
HapII	CCGG	3 cut(s)	131, 544, 599
HgaI	GACGC	2 cut(s)	88, 860
Hin1II	CATG	3 cut(s)	170, 241, 347
HinfI	GANTC	2 cut(s)	349, 472
HpaII	CCGG	3 cut(s)	131, 544, 599
HphI	GGTGA	3 cut(s)	85, 145, 704
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	4 cut(s)	30, 201, 477, 595
Hpy188III	TCNNGA	8 cut(s)	20, 344, 418, 539, 563, 705, 818, 905
Hpy8I	GTNNAC	1 cut(s)	645
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	516, 860
HpyCH4III	ACNGT	4 cut(s)	26, 151, 280, 766
HpyCH4IV	ACGT	2 cut(s)	123, 307
HpyCH4V	TGCA	6 cut(s)	46, 51, 61, 127, 638, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 52, 88, 492
HpyF3I	CTNAG	2 cut(s)	332, 692
HpySE526I	ACGT	2 cut(s)	123, 307
Hsp92II	CATG	3 cut(s)	170, 241, 347
Kzo9I	GATC	7 cut(s)	16, 102, 201, 253, 477, 580, 604
LmnI	GCTCC	1 cut(s)	781
Lsp1109I	GCAGC	3 cut(s)	139, 677, 796
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	2 cut(s)	290, 705
MaeII	ACGT	2 cut(s)	123, 307
MaeIII	GTNAC	5 cut(s)	145, 280, 308, 731, 760
MalI	GATC	7 cut(s)	18, 104, 203, 255, 479, 582, 606
MboI	GATC	7 cut(s)	16, 102, 201, 253, 477, 580, 604
MboII	GAAGA	2 cut(s)	88, 226
MfeI	CAATTG	1 cut(s)	736
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	6 cut(s)	39, 143, 195, 538, 712, 778
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	7 cut(s)	226, 321, 327, 736, 781, 813, 844
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	358, 481
Mox20I	TGGCCA	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	1 cut(s)	684
Msp20I	TGGCCA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	3 cut(s)	131, 544, 599
MspR9I	CCNGG	2 cut(s)	599, 746
MunI	CAATTG	1 cut(s)	736
MvaI	CCWGG	1 cut(s)	746
MvnI	CGCG	1 cut(s)	871
MwoI	GCNNNNNNNGC	4 cut(s)	43, 52, 88, 492
NciI	CCSGG	1 cut(s)	599
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	7 cut(s)	16, 102, 201, 253, 477, 580, 604
NlaIII	CATG	3 cut(s)	170, 241, 347
NlaIV	GGNNCC	4 cut(s)	23, 558, 570, 743
NmuCI	GTSAC	3 cut(s)	145, 280, 760
PagI	TCATGA	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	425
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	5 cut(s)	129, 209, 453, 667, 811
Ple19I	CGATCG	1 cut(s)	19
PleI	GAGTC	2 cut(s)	357, 480
PpsI	GAGTC	2 cut(s)	357, 480
Psp124BI	GAGCTC	2 cut(s)	195, 712
Psp6I	CCWGG	1 cut(s)	744
PspFI	CCCAGC	1 cut(s)	862
PspGI	CCWGG	1 cut(s)	744
PspN4I	GGNNCC	4 cut(s)	23, 558, 570, 743
PspPI	GGNCC	5 cut(s)	22, 295, 541, 569, 838
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	477
PsyI	GACNNNGTC	1 cut(s)	185
PvuI	CGATCG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	2 cut(s)	195, 712
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	5 cut(s)	128, 208, 452, 666, 810
Sau3AI	GATC	7 cut(s)	16, 102, 201, 253, 477, 580, 604
Sau96I	GGNCC	5 cut(s)	22, 295, 541, 569, 838
SchI	GAGTC	2 cut(s)	358, 481
ScrFI	CCNGG	2 cut(s)	599, 746
SduI	GDGCHC	6 cut(s)	39, 143, 195, 538, 712, 778
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	59
SinI	GGWCC	4 cut(s)	22, 541, 569, 838
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	3 cut(s)	363, 391, 818
SmoI	CTYRAG	3 cut(s)	363, 391, 818
Sse9I	AATT	7 cut(s)	226, 321, 327, 736, 781, 813, 844
SsiI	CCGC	7 cut(s)	8, 68, 156, 207, 452, 495, 869
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	2 cut(s)	290, 705
SstI	GAGCTC	2 cut(s)	195, 712
StyD4I	CCNGG	2 cut(s)	597, 744
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	4 cut(s)	26, 151, 280, 766
TaiI	ACGT	2 cut(s)	126, 310
TaqI	TCGA	5 cut(s)	111, 189, 256, 607, 879
TasI	AATT	7 cut(s)	226, 321, 327, 736, 781, 813, 844
TauI	GCSGC	2 cut(s)	210, 454
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	2 cut(s)	53, 436
TseFI	GTSAC	3 cut(s)	145, 280, 760
TseI	GCWGC	3 cut(s)	127, 665, 809
Tsp45I	GTSAC	3 cut(s)	145, 280, 760
TspDTI	ATGAA	2 cut(s)	226, 498
TspRI	CASTG	2 cut(s)	53, 436
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	4 cut(s)	22, 541, 569, 838
XapI	RAATTY	1 cut(s)	844
XbaI	TCTAGA	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	644
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	2 cut(s)	290, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.